New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 786311	16 (0.810)	3 (0.160)	3/258	NT	14.2%	coding (175/1047 nt)	galT	galactose‑1‑phosphate uridylyltransferase
	?	CP009273	= 786404	21 (1.110)					coding (82/1047 nt)	galT	galactose‑1‑phosphate uridylyltransferase

CCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGA  >  CP009273/786175‑786459                                                                                                                                         |                                                                                                                                                     ccGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACcgcgct                                                                                                                                                >  2:55574‑M1/1‑137 (MQ=255)      cgcgcTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCGAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTgcgc                                                                                                                                           >  2:54539/1‑143 (MQ=255)             gggCAACGTATCAGCGGATCGTGACTTTCTGGTGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACAGTACCTGCGCAGAGGaa                                                                                                                                    <  2:39004/142‑1 (MQ=255)                  aCGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGAt                                                                                                                         >  1:172471/1‑149 (MQ=255)                                         cTGGCGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTtg                                                                                                  >  1:60795/1‑149 (MQ=255)                                           ggCGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAGGCAATCTGGATCGTGCGCAGGTAACACCTg                                                                                                      >  2:332279/1‑143 (MQ=255)                                                 tCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCCGGTAACACCTGTTtggc                                                                                                >  2:287669/1‑143 (MQ=255)                                                              aCATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGGTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGTGCAGGTAACACCTGTTTGGCTGGCGTTTCCTgc                                                                                   >  2:146895/1‑143 (MQ=255)                                                                         gCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGgcg                                                                  <  1:265778/149‑1 (MQ=255)                                                                         gCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGgcg                                                                  >  1:301010/1‑149 (MQ=255)                                                                              gTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACcgcgctaagcgcccctggcagggggcgcaggaaacgccagccaaacaggtgttacctgcgcacgatccagattgcttcctctgcgcagg                                                             <  1:61997‑M1/149‑90 (MQ=255)                                                                               ttaTTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTGATCGCCTGTCACCCGCACATTACCTGCGCAGCTGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCG‑CCCCTGGCAgggggcg                                                                 <  2:286437/141‑4 (MQ=255)                                                                                     gTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtg                                                      <  1:134726‑M2/149‑4 (MQ=255)                                                                                      tGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgc                                                     >  1:60831‑M2/1‑145 (MQ=255)                                                                                      tGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGGAACAGCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgc                                                     <  1:213321‑M2/149‑5 (MQ=255)                                                                                           aCGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCATGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCCGGCGCGCTTAGCGCGgtg                                                      <  2:52857‑M2/143‑4 (MQ=255)                                                                                                 gTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGa                                                >  2:173544/1‑143 (MQ=255)                                                                                                      ggTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACcgcgctaagcgcccctggcagggggcgcaggaaacgccagccaaacaggtgttacctgcgcacgatccagattgcttcctctgcgcaggtaatgtgcgggtgacagg                                           <  2:280416‑M1/143‑108 (MQ=255)                                                                                                              cGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCCGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCACCCTGCCACGGGCGCTTAGCGCGGTGCGGGGCAACCAGAAACCAGTGgccc                             >  1:118272/1‑148 (MQ=255)                                                                                                               ggggTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCAtt                                  <  2:54504/143‑1 (MQ=255)                                                                                                               ggggTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCgg                            >  1:191658/1‑149 (MQ=255)                                                                                                                   tttttATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAg                        >  1:12157/1‑149 (MQ=255)                                                                                                                            ccTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgcgggtgacaggcgataaaaaccccgattacacc                     <  2:280416‑M2/143‑37 (MQ=255)                                                                                                                                tCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAgcgg           <  1:307234/149‑1 (MQ=255)                                                                                                                                      gCACcgcgctaagcgcccctggcagggggcgcaggaaacgccagccaaacaggtgttacctgcgcacgatccagattgcttcctctgcgcaggtaatgtgcgggtgacaggcgataaaaaccccgattacaccgggacttacgttttca     >  1:60831‑M1/1‑4 (MQ=255)                                                                                                                                      gCACcgcgctaagcgcccctggcagggggcgcaggaaacgccagccaaacagctgttccctgcgcacgatccagattgcttcctctgcgcaggtaatgtgcgggtgacaggcgataaaaaccccgattacaccgggacttacgttttca     <  1:213321‑M1/149‑146 (MQ=255)                                                                                                                                      gCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGAtgt     <  1:210065/149‑1 (MQ=255)                                                                                                                                       cACcgcgctaagcgcgccgggcagggggcgcaggaaacgccagccaaacaggtgttacctgcgcatgatccagattgcttcctctgcgcaggtaatgtgcgggtgacaggcgataaaaaccccgattacaccgggacttacgt          <  2:52857‑M1/143‑141 (MQ=255)                                                                                                                                       cACcgcgctaagcgcccctggcagggggcgcaggaaacgccagccaaacaggtgttacctgcgcacgatccagattgcttcctctgcgcaggtaatgtgcgggtgacaggcgataaaaaccccgattacaccgggacttacgttttcac    <  1:134726‑M1/149‑147 (MQ=255)                                                                                                                                         caTTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTTAGCGGGTTGTAGCGGCGATGTGga  <  1:274446/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                     CCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCAAAGCCGCAAAGTCATTAGTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGA  >  CP009273/786175‑786459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.