New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	313710 =	2 (0.030)	54 (0.920)	43/296	0.3	96.4%	coding (321/594 nt)	rclC	reactive chlorine species (RCS) stress resistance inner membrane protein
	?	CP009273	1462167 =	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

CCGGAAGACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/313853‑313710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  >  CP009273/1462167‑1462314                                                                                                                                                                                                                                                                                                       CCGGAAGACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGAT                                                                                                                                                 <  2:758671/149‑1   GGAAGACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAGACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCGGGGTTTGGCTATTTGGAGTT                                                                                                                                               >  2:719188/1‑149     AAGACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGC                                                                                                                                             <  2:775851/149‑1      AGACTATAAACAGTATCTGACTCACGAAGGCTAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTCCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCC                                                                                                                                            <  1:639319/149‑1      AGACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTCACTGGATTTGCC                                                                                                                                            >  2:225168/1‑149       GACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGGTTTTTTCCAACTGTCTTGGCGTCGTGGAGGTGAGTGTTGCTCTGCTGGTTTTGGCTAATTGGGTTTGCC                                                                                                                                            >  2:358676/1‑149          TATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGGTTTGCCCCTA                                                                                                                                        >  2:157175/1‑149           ATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTAGTAGCGGTTACGATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTAT                                                                                                                                       >  1:787593/1‑149              AACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGCCGTGGAGGTGATTATTGCACTGCTGGTTTTGGCTCATTGGAATTGCCCCTATATT                                                                                                                                    >  2:459413/1‑149               ACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAGTAATACCTATGG‑TTTTTACAACGGTATTGGCGTCGTGGAGGTGGTTATTGCTCTGCTGGGTGTGGCTCATTGGAATTGCGCCTATATgt                                                                                                                                   >  2:27691/1‑147                 cgtaccgGACTCACTAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATCCCTATGG‑TTTTTCCAACGGTCTTTGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTGGCCCCTATATGTCC                                                                                                                                 <  2:81891/142‑1                  gaATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCA                                                                                                                                <  2:780808/147‑1                   TATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAa                                                                                                                               >  2:261799/1‑148                           gCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGT                                                                                                                       >  1:805380/2‑149                            CACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTGGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTT                                                                                                                      <  1:228184/149‑1                                AAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCA                                                                                                                  <  1:10466/149‑1                                     GAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAA                                                                                                             <  1:121381/149‑1                                           AAACCAGAAGCAAGGGCACGGCAAACGGCCAATAATACCTATGG‑TTTTTCCCAGGGTCTGGGCGTCGTGGAGGTGATTATTGCGCTGCTGGGTTTGGCTATTTGACAGTGCCCCCATATTTCCCAACATCTGTTATCACTTAACCCATT                                                                                                       >  2:817255/1‑149                                            AACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTTCTGGTTTTGGCTACTGGGAGTTGCCCCTATGTTTCCAGACATCTGTTATGACTTCACCCATTc                                                                                                      >  2:191764/1‑148                                                AGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAGTTGGATTTGCCCCTATATTTCCAGCCATCTGTTATCCCTTAACCCATTCCAAG                                                                                                  >  2:408003/1‑149                                                             TGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAG                                                                                     >  1:291971/1‑149                                                               GCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAT                                                                                   >  2:687673/1‑149                                                                 AAACGGCCAATAATACCTATGG‑TTTTTTTATCGTTTTTGGCGTCGTGGAGGGGGTTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCGTTACAAGCCCGCTGCCGCAGATAT                                                                                 >  2:511579/1‑149                                                                 AAACGGCCAATAATACCTATGG‑TTTTTCGAACGGTCTTGGCGTAGTGGAGGAGATTACTGCTCTGCTGGTTTTGGCAAATTAGATTTGCCCCAATATTTACAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATAT                                                                                 >  1:715268/1‑149                                                                 AAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGGGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCACTATATTTCCAGACATCTGTTATCACTTAACCCATTGCAAGCCCGCTGCCGCAGATAT                                                                                 >  2:371139/1‑149                                                                       CCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGT                                                                           >  1:84284/1‑149                                                                           TAATACGTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGACAGCTGCCGCAGATATTCCCGTGGCG                                                                       >  2:703335/1‑149                                                                            gagACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCCCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA                                                                      <  2:626273/146‑1                                                                            AATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA                                                                      >  2:2845/1‑149                                                                            AATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGA                                                                      >  2:255786/1‑149                                                                               ACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCG                                                                   <  1:170603/149‑1                                                                               ACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTGTGGCTAATTGGATTTGCCCCTATATTTCCCGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCG                                                                   <  2:847991/149‑1                                                                                CCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGA                                                                  <  1:234205/149‑1                                                                                                ACGGTCTTGGTGGCGTGGAGGGGATTGTTGCTCTGCTGGTTTCGGTAAATTGGATTTGCCCCTATATTTCCGTACATCTGGTAGCTCTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTA                                                   <  2:819213/149‑1                                                                                                         GCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTCGCCCCTATATTCCCAGACATCTGTTATCACTGAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGC                                          <  2:188496/149‑1                                                                                                            TCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCATATATCTACAGAAAACTGTGATCACTTAACCCATTACAGACCCACTGCCGCAGCTATTCCGCTGGCGACCGATAACCCAGCGCACTATGCGGATCCCAT                                       >  2:902889/1‑149                                                                                                                       ATTATTGCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATGTTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATG                            >  1:819382/1‑149                                                                                                                       ATTATTGCTCGGCTGGTTTGGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATG                            <  2:74720/149‑1                                                                                                                         TATTGCTCGGCTGGTTTTGGCTAATTGGATTTGCCCCGATATTTCCAGACATCTGTTCTCACTTATCCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATCACCCAGCGCACTATTCGGATGCCATTCGTTATAATGCT                          <  2:715268/149‑1                                                                                                                             GCTCTGCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGTCGGGCGATAACCCAGCGCCCTATGCGGATGCCATTCGTTATAATGtccgac                      >  2:261260/1‑143                                                                                                                                  GCTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACACCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCT                 <  2:640820/149‑1                                                                                                                                   CTGGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGGTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTCTGCGGATGCCATTCGTCCTAATGCTCGCACCCCTC                >  2:896898/1‑149                                                                                                                                    TGGTTTTGGCTAATCAGATTTGCCCCGATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCT               <  1:736210/149‑1                                                                                                                                     GGTTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTG              >  2:832969/1‑149                                                                                                                                       TTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCCGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGCTGCCCTTCGTTATAATGCTCGAACGCCTCTGCA            >  1:890339/1‑149                                                                                                                                       TTTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCA            <  1:792884/149‑1                                                                                                                                        TTTGGCTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAA           <  1:468555/149‑1                                                                                                                                             CTAATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTC      >  1:871410/1‑149                                                                                                                                                ATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT   <  2:805380/149‑1                                                                                                                                                ATTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT   <  2:890454/149‑1                                                                                                                                                ATTGGATTGGCCCCTATATTGCCCGACATCTGTTATCACTGAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCAAGCGATAACCCAGCGCACTATGCGGATGCCATTCTTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT   <  2:567779/149‑1                                                                                                                                                 TTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  <  1:147817/149‑1                                                                                                                                                 TTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  >  2:826670/1‑149                                                                                                                                                 TTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  >  2:82704/1‑149                                                                                                                                                                                                                                                                                                       CCGGAAGACTATAAACAGTATCTGACTCACGAAGGCGAATACAAACCAGAAGCAAGGGCATGGCAAACGGCCAATAATACCTATGG‑TTTTTCCAACGGTCTTGGCGTCGTGGAGGTGATTATTGCTCTGCTGGTTTTGGCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/313853‑313710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  >  CP009273/1462167‑1462314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.