mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,208,007 | 0 | T | G | 22.3% | 228.5 / 18.2 | 112 | S534S (TCT→TCG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | CP009273 | 3,208,019 | 0 | A | G | 21.7% | 233.6 / 26.1 | 116 | E538E (GAA→GAG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| Marginal new junction evidence (lowest skew 10 of 103 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 124 (1.100) | 10 (0.100) | 10/258 | 11.6 | 9.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 92 (0.920) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 3939413 | 5 (0.040) | 12 (0.110) | 10/282 | 12.5 | 71.2% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 3939429 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | CP009273 | = 224595 | NA (NA) | 12 (0.110) | 10/282 | 12.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 224611 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 1203261 | 123 (1.090) | 9 (0.090) | 8/258 | 12.7 | 8.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 91 (0.910) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 2723314 = | NA (NA) | 13 (0.120) | 8/278 | 13.5 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2723331 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 221460 | 48 (0.430) | 12 (0.110) | 7/278 | 14.2 | 20.7% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2723331 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 2871298 = | 196 (1.740) | 8 (0.070) | 7/284 | 14.4 | 3.9% | intergenic (+321/+630) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871341 = | 206 (1.870) | intergenic (+364/+587) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | 657799 = | 103 (0.920) | 7 (0.070) | 6/274 | 14.7 | 6.6% | intergenic (‑65/+36) | lipB/ybeD | octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein |
| ? | CP009273 | 657824 = | 100 (0.940) | intergenic (‑90/+11) | lipB/ybeD | octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein | |||||
| * | ? | CP009273 | = 3224767 | 145 (1.290) | 6 (0.060) | 6/280 | 14.9 | 4.0% | noncoding (157/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 3224786 | 145 (1.340) | noncoding (176/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | CP009273 | = 4161373 | 8 (0.070) | 13 (0.120) | 6/284 | 15.1 | 62.4% | noncoding (2805/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202760 | NA (NA) | noncoding (2790/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||