Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP009273	2,420,337	Δ120 bp	intergenic (‑70/+32)	hisJ ← / ← argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	2420337	2420456	120	38 [0]	[0] 38	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2420336	0 (0.000)	38 (0.890)	33/296	0.3	100%	intergenic (‑69/+152)	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit
	?	CP009273	2420457 =	0 (0.000)					intergenic (‑190/+31)	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

GTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCATCATCTT  >  CP009273/2420310‑2420603                                                                                                                                                    |                                                                                                                                                   ttgcggaatcgaagcaaacgccgcaggtgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAt                                                                                                                                                   <  2:409910‑M2/2‑1 (MQ=255)   gtgggatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTc                                                                                                                                                 <  2:302996‑M2/4‑1 (MQ=255)     ggaatcgcagcaaacgccgcagttgcgctggagaaggccagcaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacagggttgttacacttatcgtgccataaaaATTCCa                                                                                                                                               >  2:39986‑M2/144‑149 (MQ=255)     ggaatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAttcac                                                                                                                                               >  2:35136‑M2/144‑147 (MQ=255)        atcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCa                                                                                                                                            <  1:182521‑M2/9‑1 (MQ=255)             tccaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttccacttatcgtgccataaaaATTCCATCAGGtaa                                                                                                                                       <  1:481456‑M2/14‑2 (MQ=255)             agcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAGTCCATAAGGtaa                                                                                                                                       >  1:673087‑M2/136‑148 (MQ=255)               gaaaccccgcagttgcgctggagaaggccagaaccagagagagcgatagcagcagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAg                                                                                                                                     <  2:330420‑M2/16‑1 (MQ=255)                    gccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctccactgacagtccttttatagggaatatttactggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTcc                                                                                                                                <  2:602896‑M2/21‑1 (MQ=255)                      cgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCa                                                                                                                              >  1:694389‑M2/127‑149 (MQ=255)                          gttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGa                                                                                                                          <  1:233871‑M2/27‑1 (MQ=255)                             gcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGt                                                                                                                       >  1:626087‑M2/120‑149 (MQ=255)                                      aaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCAc                                                                                                              <  1:576907‑M2/39‑1 (MQ=255)                                                          cgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGaaa                                                                                          >  1:70203‑M2/91‑149 (MQ=255)                                                             tagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATAc                                                                                       <  2:694389‑M2/62‑1 (MQ=255)                                                                ccccagttttttcataatgtcctcaattgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACttt                                                                                    <  2:632301‑M2/65‑1 (MQ=255)                                                                 accagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGCAATAAtttt                                                                                   >  2:541467‑M2/84‑149 (MQ=255)                                                                   cagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc                                                                                 >  1:476092‑M2/82‑149 (MQ=255)                                                                   cagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc                                                                                 <  2:694997‑M2/68‑1 (MQ=255)                                                                          ttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCt                                                                          >  1:146045‑M2/75‑149 (MQ=255)                                                                          ttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATAATTTTTCCCCctct                                                                          >  1:82801‑M2/75‑149 (MQ=255)                                                                                       caactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGcc                                                             <  1:428723‑M2/88‑1 (MQ=255)                                                                                            gacggtttttttatagggaatatttccaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCt                                                        <  2:546292‑M2/93‑1 (MQ=255)                                                                                                 tctttttttagggaatttttacaggtttgttacacctttcgtgccataaaaATTCCATTAGGTAAAGCTTCCCCGCGACGTAACAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGc                                                   <  2:225920‑M2/98‑1 (MQ=255)                                                                                                   tttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAg                                                 >  1:369181‑M2/50‑149 (MQ=255)                                                                                                        atagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGCCGTAGGTCCCTTACTGACGCAGCTCGc                                            >  2:603710‑M2/45‑149 (MQ=255)                                                                                                            ggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCCAg                                        >  2:463478‑M2/41‑149 (MQ=255)                                                                                                             gaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAgc                                       <  2:154252‑M2/110‑1 (MQ=255)                                                                                                              aatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAgcg                                      >  2:110292‑M2/39‑149 (MQ=255)                                                                                                              aatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTGTTCGTAGGTGCCGTCCTGACTCAGCTCGCCAAgcg                                      >  1:316571‑M2/39‑149 (MQ=255)                                                                                                                   gggcggggttgttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTa                                 <  2:517337‑M2/116‑1 (MQ=255)                                                                                                                      caggtttgttacacttatcgtgccataaaaAGTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTg                              <  1:138878‑M2/119‑1 (MQ=255)                                                                                                                              ttacacttatcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAATTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGc                      >  1:201995‑M2/23‑149 (MQ=255)                                                                                                                                       tcgtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTc             <  1:39986‑M2/136‑1 (MQ=255)                                                                                                                                         gtgccataaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAg           <  2:476092‑M2/138‑1 (MQ=255)                                                                                                                                             cataaaaATTCCATCAGGTAAAGCTTCCAAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCATCAGTTCagcagc       <  2:602037‑M2/142‑3 (MQ=255)                                                                                                                                                aaaaATTCCATCAGGTAAAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCatcatc    <  1:88003‑M2/145‑1 (MQ=255)                                                                                                                                                  aaATTCCGTCTGGTAAAGCTGCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCATCATCtt  <  2:53794‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAGCATCATCTT  >  CP009273/2420310‑2420603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑