| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 2,420,337 | Δ120 bp | intergenic (‑70/+32) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2420337 | 2420456 | 120 | 38 [0] | [0] 38 | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420336 | 0 (0.000) | 38 (0.890) | 33/296 | 0.3 | 100% | intergenic (‑69/+152) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420457 = | 0 (0.000) | intergenic (‑190/+31) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||
TTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGA > CP009273/2420190‑2420483 | ttGCGGAATCGAAGCAAACGCCGCAGGTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAat < 2:409910‑M1/149‑3 (MQ=255) gtgggatcgcaGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattc < 2:302996‑M1/144‑5 (MQ=255) ggAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGCACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGGTTGTTACACTTATCGTGCCATAAAAattcca > 2:39986‑M1/1‑143 (MQ=255) ggAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattcac > 2:35136‑M1/1‑143 (MQ=255) aTCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatca < 1:182521‑M1/149‑10 (MQ=255) tccaaaCGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTCCACTTATCGTGCCATAAAAattccatcaggtaa < 1:481456‑M1/147‑15 (MQ=255) agcaAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAagtccataaggtaa > 1:673087‑M1/1‑135 (MQ=255) gaaacCCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCAGCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaag < 2:330420‑M1/148‑17 (MQ=255) gccgcAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCCACTGACAGTCCTTTTATAGGGAATATTTACTGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcc < 2:602896‑M1/149‑22 (MQ=255) cgcAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttccca > 1:694389‑M1/1‑126 (MQ=255) gTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcga < 1:233871‑M1/149‑28 (MQ=255) gcgcTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgt > 1:626087‑M1/1‑119 (MQ=255) aaGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcac < 1:576907‑M1/149‑40 (MQ=255) cGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaa > 1:70203‑M1/1‑90 (MQ=255) tAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatac < 2:694389‑M1/149‑63 (MQ=255) ccccagTTTTTTCATAATGTCCTCAATTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatacttt < 2:632301‑M1/147‑66 (MQ=255) aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgcaataatttt > 2:541467‑M1/1‑83 (MQ=255) cAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttc > 1:476092‑M1/1‑81 (MQ=255) cAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttc < 2:694997‑M1/149‑69 (MQ=255) ttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatct > 1:146045‑M1/1‑74 (MQ=255) ttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaataatttttccccctct > 1:82801‑M1/1‑74 (MQ=255) cAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgcc < 1:428723‑M1/149‑89 (MQ=255) gACGGTTTTTTTATAGGGAATATTTCCAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcct < 2:546292‑M1/149‑94 (MQ=255) tCTTTTTTTAGGGAATTTTTACAGGTTTGTTACACCTTTCGTGCCATAAAAattccattaggtaaagcttccccgcgacgtaacagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgc < 2:225920‑M1/149‑99 (MQ=255) tttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcag > 1:369181‑M1/1‑49 (MQ=255) ataGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgccgtaggtcccttactgacgcagctcgc > 2:603710‑M1/1‑44 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgcccag > 2:463478‑M1/1‑40 (MQ=255) gAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagc < 2:154252‑M1/149‑111 (MQ=255) aaTATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcg > 2:110292‑M1/1‑38 (MQ=255) aaTATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatctgttcgtaggtgccgtcctgactcagctcgccaagcg > 1:316571‑M1/1‑38 (MQ=255) gggcggggttgttacactTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgcctta < 2:517337‑M1/141‑117 (MQ=255) cAGGTTTGTTACACTTATCGTGCCATAAAAagtccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattg < 1:138878‑M1/149‑120 (MQ=255) ttACACTTATCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaattcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagc > 1:201995‑M1/1‑22 (MQ=255) tCGTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttc < 1:39986‑M1/149‑137 (MQ=255) gTGCCATAAAAattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcag < 2:476092‑M1/149‑139 (MQ=255) cATAAAAattccatcaggtaaagcttccaagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccatcagttcagcagc < 2:602037‑M1/149‑143 (MQ=255) aaaaattccatcaggtaaagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcagcatcatc < 1:88003‑M1/149‑146 (MQ=255) aaattccgtctggtaaagctgcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcagcatcatctt < 2:53794‑M1/149‑148 (MQ=255) | TTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGA > CP009273/2420190‑2420483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |