mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,388,249 | 0 | T | C | 20.4% | 214.1 / 19.2 | 105 | T93A (ACT→GCT) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| * | CP009273 | 2,388,247 | 0 | A | G | 20.2% | 223.9 / 11.9 | 105 | T93T (ACT→ACC) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Marginal new junction evidence (lowest skew 10 of 113 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 91 (0.860) | 14 (0.150) | 14/262 | 9.3 | 14.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 80 (0.850) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 100 (0.940) | 13 (0.140) | 11/262 | 10.6 | 13.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 83 (0.880) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 4158301 | 59 (0.560) | 4 (0.070) +66 bp |
3/162 | 11.1 | 7.8% | noncoding (2/76 nt) | gltT | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 113 (1.070) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 2722802 = | 69 (0.650) | 4 (0.070) +66 bp |
3/162 | 11.1 | 7.4% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 113 (1.070) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 4532499 = | 68 (0.640) | 10 (0.100) | 10/276 | 11.7 | 11.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 86 (0.870) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 221565 = | NA (NA) | 11 (0.110) | 9/280 | 12.4 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221587 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 2724424 = | 110 (1.040) | 21 (0.200) | 9/288 | 12.7 | 16.3% | noncoding (93/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 3422047 = | NA (NA) | noncoding (75/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | = 3938338 | NA (NA) | 17 (0.170) | 7/282 | 13.7 | 27.4% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 47 (0.440) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 17 (0.170) | 7/282 | 13.7 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223539 | 62 (0.590) | 17 (0.170) | 7/282 | 13.7 | 22.2% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||