Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,388,2470AG20.2% 223.9 / 11.9 105T93T (ACT→ACC) nuoLNADH:ubiquinone oxidoreductase, membrane subunit L
Reads supporting (aligned to +/- strand):  ref base A (46/37);  new base G (1/20);  total (47/58)
Fisher's exact test for biased strand distribution p-value = 1.38e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 105 total aligned reads displayed.

CGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTT  >  CP009273/2388102‑2388394
                                                                                                                                                   |                                                                                                                                                   
cGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑AGAACCGACACCAGTg                                                                                                                                                  >  2:672854/1‑149 (MQ=255)
  aGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGGAGCCCTCTTCGCCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAGACCCACACCAGt                                                                                                                                                   >  1:1266070/1‑146 (MQ=255)
  aGGTACACCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGATGGTGTAAGCGAAGAAGCGAGAGTAGTCCTCTTCTCCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGt                                                                                                                                                   <  1:274595/146‑1 (MQ=255)
       cacccgccgcagGTTGGCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGacca                                                                                                                                              <  1:966200/138‑1 (MQ=255)
       cATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGacca                                                                                                                                              >  1:1630646/1‑146 (MQ=255)
         tCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCgag                                                                                                                                         >  2:1465600/1‑149 (MQ=255)
          cagcagcagGTTGTCGGCAAGCACCAGAACCACAATGCAGGTCTTCTACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑ATTAAG‑GAAACCCACACCAGTGACCACCgaga                                                                                                                                        <  2:930184/149‑1 (MQ=255)
           agcagcagGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTgtgtcgaaatcg                                                                                                                                       >  2:72080/1‑138 (MQ=255)
               gcagGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATg                                                                                                                                   >  2:1370789/1‑149 (MQ=255)
                 gggTTGCCGGCAAGCCCCAGAACCACCAGGCTGGCGAGGAACAGGTTGGCGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGt                                                                                                                                 <  2:362766/148‑1 (MQ=255)
                  ggTTGTCGGCAAGTACCAGAACTACCAGGCTGGCGAGGGACAGGTGGGTGTAAGCTAAGAAGCGAGAGTGGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GTAACCCACACCAGTGACCACCGAGAGCATGGTc                                                                                                                                <  2:807511/149‑1 (MQ=255)
                   gTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCCTCACCGCGCATATACCAGGAGGCGGACATGAG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATgg                                                                                                                                  >  1:335320/1‑146 (MQ=255)
                    ttGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACTAGTGACCACCGAGAGCATGGTCAg                                                                                                                              <  2:1320789/149‑1 (MQ=255)
                    ttGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCGCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAg                                                                                                                              >  2:1403295/1‑149 (MQ=255)
                     tGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGc                                                                                                                             <  2:1070648/149‑1 (MQ=255)
                        cGGCAATCACCAGAACCGCCATGCTTTCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGAc                                                                                                                          <  2:1647588/149‑1 (MQ=255)
                         ggCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACa                                                                                                                         >  2:1568631/1‑149 (MQ=255)
                            aaGCACCGCAACAACCAGGCTGGCGATGAACGGGTTGGTGTAAGCGAAGAAGCGAGTGTAGCCCTCTTCACCGCGCATAAACCAGGAGGCGTATATGTG‑TTTTAGTTTTAATGATA‑CGGCGACCACCGAGAGCATGGTCAGCGACa                                                                                                                         <  1:74304/146‑1 (MQ=255)
                               cACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGc                                                                                                                      >  1:311039/1‑146 (MQ=255)
                                aCCAGAACCACCAGGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTc                                                                                                                  <  2:1371638/149‑1 (MQ=255)
                                    gAACCACCAGGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATTAG‑GTTTAACGCTACGGCGACCACCGAGAGCATGGTCAGCGACAgcatggtg                                                                                                                 <  1:1611174/146‑8 (MQ=255)
                                      accaccATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCAc                                                                                                            >  2:212625/1‑149 (MQ=255)
                                        caccaTGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCGGTGACCACCGAGAGCATGGTCAGCGTCAGGCGGTGCAGGACCa                                                                                                          >  2:640986/1‑149 (MQ=255)
                                         cacctGCTGGCGATGAACAGGTTGGTGTCAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑ACCAAG‑GAAACCCACACCAGGGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAg                                                                                                         <  2:153333/145‑1 (MQ=255)
                                         accaTGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCCGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGCCAGGCCGCCcaccac                                                                                                            >  1:1317071/1‑146 (MQ=255)
                                           caTGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGt                                                                                                       >  2:1176805/1‑149 (MQ=255)
                                               cTGGCGATGAACAGGTTGGTGTAAGAGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAACCCCACACCAGTGACCACCGAGAGCATGGCCAGCGACGGGCGGCCGAGCACCAggca                                                                                                      >  1:102602/1‑144 (MQ=255)
                                                    gATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGa                                                                                              >  2:1594165/1‑149 (MQ=255)
                                                     aTGAACATGTTGGTGTAAGCGAAGAAGCGAGAGTACCCCCCTTCACCGCGCATATACCCGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGAt                                                                                             <  2:1431065/149‑1 (MQ=255)
                                                     aTGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGAt                                                                                             >  2:1579436/1‑149 (MQ=255)
                                                     aTGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGAt                                                                                             <  2:647953/149‑1 (MQ=255)
                                                       gAACAGGTTGGTGTAAGCGAAGAAGGGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑TATTTG‑GTTTCCTGCTCCGGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGa                                                                                              <  1:918419/146‑1 (MQ=255)
                                                       gAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑TTTTAT‑GTTTCACGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGa                                                                                              <  1:1424182/146‑1 (MQ=255)
                                                       gAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑ATTAAT‑GTTTCCCGCACCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGa                                                                                              <  1:1101353/146‑1 (MQ=255)
                                                       gAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGt                                                                                           >  2:815637/1‑149 (MQ=255)
                                                          cAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTaa                                                                                        >  2:116473/1‑149 (MQ=255)
                                                           aGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTT‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTaaa                                                                                       <  2:1746260/149‑1 (MQ=255)
                                                           aGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATATT‑GTTTCATGCTACGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGtt                                                                                          <  1:441630/146‑1 (MQ=255)
                                                             gttgggtttcgtgaagagGCCAGAGTAGCCCGCGTCACCGGCCCTCTTACGGGTGGTGTATAGGTG‑ATTTTG‑GTATCCCGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTaa                                                                                        <  1:307972/134‑1 (MQ=255)
                                                             gTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGCGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGt                                                                                     >  2:1385939/1‑149 (MQ=255)
                                                             gTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACCTGTG‑AATAAG‑GGAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACGGGCCGGCCGGCACCAGGTGAAACCCGaggcaaa                                                                                        >  1:254260/1‑140 (MQ=255)
                                                              ttGGTGTAAGCGAAGAAGCGAGAGTAGCCTTCTTCACCGCGAATATACCAGGAGGCGTACATGTG‑ATTATT‑GTATCACGATACGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTaaa                                                                                       <  1:299502/146‑1 (MQ=255)
                                                              ctggtggAAGCGAAGAACCGAGAGTAGCCCCCTCCACCGCGCATATACCAGGAGGCGTACATGTG‑ATTATT‑TTTTACTAATACGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTaaa                                                                                       <  1:337679/145‑1 (MQ=255)
                                                                ggTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGc                                                                                  <  2:200077/149‑1 (MQ=255)
                                                                 gtgtAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑TATTCCCGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTc                                                                                    <  1:1096755/146‑1 (MQ=255)
                                                                   gtACGCGAAGAAGCGAGGGTAGCCCTCTCCACCGCGCACATACCAGGAGGCGTACCTGTGTTTTTTT‑TTTAATGATA‑CGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGc                                                                                  <  1:31507/146‑1 (MQ=255)
                                                                     aaGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGACAGCATACGCATCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTAcc                                                                             <  2:789088/149‑1 (MQ=255)
                                                                      aGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGGTAAAACCGACGTTAAAGTCGCCTa                                                                               >  1:616938/1‑146 (MQ=255)
                                                                      aGCGAAGAAGCGAGAATAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGGGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCg                                                                            <  2:1697146/149‑1 (MQ=255)
                                                                       gCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCCTGGCCAGCGACAGGCCGCCCAGCACCAGGATAAAACCGACGCCAAAGGCGccgcc                                                                              >  1:1296435/1‑143 (MQ=255)
                                                                       gCGAAGAAGCGAGAGTAGCCCTCGTCACGGCGCAGATACCAGGAGGCGTACATATG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGAGGTTAAAGTCGCCTACCGa                                                                           >  2:982468/1‑149 (MQ=255)
                                                                        ggaagagGCTAGAGTCGCCGTCTTCACCGCGCATATTCCAGGAGGCGTACATGTG‑TATTTG‑TTTTACCGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTAcc                                                                             <  1:246289/145‑1 (MQ=255)
                                                                           agaagCGAGAGTAGCCCCCTTCACCGCGCATATACCAGGAGGCGTACATGAG‑CCAAGG‑GTAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATc                                                                       <  2:852151/149‑1 (MQ=255)
                                                                            gaagCGATAGTATCCCTCTTCACCGCGAATATACCAGGAGGCGTACATGGG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAATCCGATGTTAAAGTCGCCTACCGACATcc                                                                      <  2:872088/149‑1 (MQ=255)
                                                                               gctagggTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATATG‑GTAACCCACTCCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATcc                                                                      <  1:447117/140‑1 (MQ=255)
                                                                               gCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GGAGCCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGGTAAAACGGAGGTGAAAGACGCCTCCCGACAAcc                                                                      >  1:1592924/1‑146 (MQ=255)
                                                                                cGAGAGTAGCCCTCTCCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGt                                                                  <  2:688122/149‑1 (MQ=255)
                                                                                 gagaGTAGCCCTCTTCACCGCGCATCTACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCCCCTACCGACATCCACGTc                                                                 <  2:1307683/149‑1 (MQ=255)
                                                                                    agTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGCCATCCACGTCcac                                                              >  2:426319/1‑149 (MQ=255)
                                                                                     gTAGCCCTCTCCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCcaca                                                             <  2:474589/149‑1 (MQ=255)
                                                                                      tAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCGGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCCCAg                                                            >  2:904817/1‑149 (MQ=255)
                                                                                      tAGCCCTCTTCACCGCGCATATACCAGGACGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGATTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAg                                                            >  2:1252578/1‑149 (MQ=255)
                                                                                        gCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCg                                                          >  2:1506308/1‑149 (MQ=255)
                                                                                         cccTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGGGCATGGTCAGCGACAGGCCGCCCAGCACCAGGTTAAAACCGACGTAAAAGTCGCCCACCGACCTCCACGGCCACAg                                                            >  1:403410/1‑146 (MQ=255)
                                                                                          ccTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCGCTCCGGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGc                                                           <  1:127448/146‑1 (MQ=255)
                                                                                           ctctTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCTCACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCAAGTCCACAGCggct                                                       >  2:1272499/1‑149 (MQ=255)
                                                                                            gctTCACCGCGGATATACCAGGAGGCGGACATGTG‑TATTAT‑GTTTACCGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACTGATGTTAAAGTCGCCTACCGACATCTACGTCCACAGCgg                                                         <  1:996741/145‑1 (MQ=255)
                                                                                               tCACCGCGCATATACCAGGAGGCGTACATGGG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCggctggct                                                   <  2:1538914/149‑1 (MQ=255)
                                                                                                cACCGCGCATATGCCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCGCACCAGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCggctgg                                                     <  1:1470126/146‑1 (MQ=255)
                                                                                                cACCGCGCATATCCCAGGAGGCGTACATGTG‑TTTATT‑GTATCCTGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCggctgg                                                     <  1:1248486/146‑1 (MQ=255)
                                                                                                    gcgcATTTACCACGAGGCGTACATGTG‑TATAAG‑TTATCCCGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGt                                                 <  1:1542375/146‑1 (MQ=255)
                                                                                                      gcATATACCAGGAGGCGTACATGTG‑AATATG‑TAAACCCGCACCAGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTAt                                               <  1:273975/146‑1 (MQ=255)
                                                                                                        atatACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTg                                          >  2:1260898/1‑149 (MQ=255)
                                                                                                        atatACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTg                                          >  2:1105801/1‑149 (MQ=255)
                                                                                                          ataCCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACCGCGGCTGGCTGTATGTCt                                           >  1:478281/1‑146 (MQ=255)
                                                                                                            aCCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTCGAAGTCGCCTACCGACATCAACGTCCACAGCGGCTGCGTGTATGTCTGc                                         >  1:271456/1‑146 (MQ=255)
                                                                                                               aggaggCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGCTGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCCGGATGGCTGCCCg                                      >  1:1387984/1‑146 (MQ=255)
                                                                                                                ggaggCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTGTGTCTGCTCGCCGt                                  >  2:654736/1‑149 (MQ=255)
                                                                                                                   ggCGTACGTGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGCGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACAGCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAg                               <  2:203808/149‑1 (MQ=255)
                                                                                                                   ggCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAg                               <  2:1604396/149‑1 (MQ=255)
                                                                                                                    gCGTACACGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGc                              <  2:1178009/149‑1 (MQ=255)
                                                                                                                       tACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCgaa                           <  2:336146/149‑1 (MQ=255)
                                                                                                                       tACACGGG‑ACTAAG‑GACTCCCACCCCCGTGACCCCCGAGAGCATGGTCAGCGACAGGCCGTCCAGCCCCAGGTTAACACTGATGTTAAAGTCGCCTACCGACATCCACGTTCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCgaa                           <  2:559816/149‑1 (MQ=255)
                                                                                                                         cATGTG‑AATAAG‑GAACCCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCgaaga                         <  2:63505/149‑1 (MQ=255)
                                                                                                                         cATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCgaaga                         <  2:1613059/149‑1 (MQ=255)
                                                                                                                              g‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGCCTGCAGGTCTGCTCGCCGTTAGCGACGaaa                       >  1:1320861/1‑146 (MQ=255)
                                                                                                                              g‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGCTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCCGCAGGCTGTATGTCAGCCCGCCGCTAGCGAAGaaa                       >  1:99931/1‑146 (MQ=255)
                                                                                                                                aaTAAG‑GATACCCGCTCCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAAt                      <  1:1301209/146‑1 (MQ=255)
                                                                                                                                aaTAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCaa                   >  2:1034075/1‑149 (MQ=255)
                                                                                                                                aaTAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGAGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCCCGTCCACAGCGGCTGGCTGGATGTCTGCTCGCCGTTAGCGAAGAAATCaa                   >  2:833762/1‑149 (MQ=255)
                                                                                                                                  tAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGCCCAGCACCAGGCTCAAACCGTGGTTAAAGTCGCCTACCGACATCCACGTCCACCGCGGGCGGCGGTATGGCGGCTCGCCGGTAGCgaagcaccca                    >  1:1545569/1‑140 (MQ=255)
                                                                                                                                    cg‑gATACCCGCACCGCCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAAc                  <  1:1128808/145‑1 (MQ=255)
                                                                                                                                    cg‑gACACCCCCACCAGCGACCACCGAGAGCAGGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAAc                  <  1:212475/145‑1 (MQ=255)
                                                                                                                                    aG‑GAAACCCGCACCGGCGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAAc                  <  1:195360/146‑1 (MQ=255)
                                                                                                                                      ggtaaCCCACACCATTGACCACCGAGCGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCg              <  2:323348/146‑1 (MQ=255)
                                                                                                                                              acacCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATACAGGc      >  2:131124/1‑149 (MQ=255)
                                                                                                                                                 ccAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGt   >  2:214474/1‑149 (MQ=255)
                                                                                                                                                 ccAGTGACCACCGAGAGCATGGGCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCACGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGt   <  2:674510/149‑1 (MQ=255)
                                                                                                                                                  cAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGCTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGGCCACAGCGGCTGGCGGTAAGTACGCCCGCCGATAGCGGAGAAACCAACGCCGAGaaccgcg     >  1:1245712/1‑141 (MQ=255)
                                                                                                                                                  cAGTGACCACCGAGAGCATGGTCAACGACATGGCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGtt  >  2:1396688/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CGAGGTACATCAGCAGCAGGTTGTCGGCAAGCACCAGAACCACCATGCTGGCGATGAACAGGTTGGTGTAAGCGAAGAAGCGAGAGTAGCCCTCTTCACCGCGCATATACCAGGAGGCGTACATGTG‑AATAAG‑GAAACCCACACCAGTGACCACCGAGAGCATGGTCAGCGACAGGCCGTCCAGCACCAGGTTAAAACCGATGTTAAAGTCGCCTACCGACATCCACGTCCACAGCGGCTGGCTGTATGTCTGCTCGCCGTTAGCGAAGAAATCAACGCCGATAAAGGCGGTT  >  CP009273/2388102‑2388394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑