New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	416386 =	64 (0.910)	3 (0.050)	5/248	NT	4.8%	intergenic (+20/‑56)	brnQ/proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
	?	CP009273	416414 =	59 (0.920)					intergenic (+48/‑28)	brnQ/proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease

AACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGC  >  CP009273/416266‑416560                                                                                                                                                     |                                                                                                                                                   taaaacagcccggtgccaattgctgaacccagtgccataaagcgtatgtggcgggtacttagcccacgctttagcttgttcttactttccatcaattcctaacccatcaacacaataaaaaaccacggggctgcgatgccccgtggttt                                                                                                                                                    >  1:114519‑M2/149‑149 (MQ=255) aaCAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGATTCTGGCCATTATCTGGGATCGCACGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCGCGTGGttt                                                                                                                                                    >  1:1115390/1‑149 (MQ=255)  aaaaaagcccggtgccaattgctgaacccagtgccataaagcgtatgtggcgggtacttagcccacgctttagcttgttcttactttccatcaattcctatcccatcaacacaataaaaaaccacggtgctgcgatgccccgtggtttt                                                                                                                                                   <  1:197460‑M2/2‑1 (MQ=255)      ggTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAt                                                                                                                                               >  1:52218/1‑149 (MQ=255)       ctCTTGCGTGGTTAATGCCAACAGTGGTGATGGTGCTTCTGGCCATTATCTGGGATCGCGCGGCCGGTCGTCAGGTGCCCTCCAGCGCGCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                                              <  1:22312/148‑1 (MQ=255)         cTGGCGGGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGGCCCGTGGTTTTTTATtgt                                                                                                                                            <  1:957592/149‑1 (MQ=255)             cgcggTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGGCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                                              <  2:243450/140‑1 (MQ=255)             cGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                                              <  2:326930/143‑1 (MQ=255)             cGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTg                                                                                                                                        >  1:414603/1‑149 (MQ=255)                 gTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATgg                                                                                                                                    <  1:420209/149‑1 (MQ=255)                  ttAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATggg                                                                                                                                   >  1:1261824/1‑149 (MQ=255)                    aaTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTGTTTTATTGTGTTGa                                                                                                                                       >  2:914991/1‑143 (MQ=255)                    aaTGCCAACAGTGGGGATGGTGGTTCTGGCCATTAGCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATGGTGTTGa                                                                                                                                       >  2:1140019/1‑143 (MQ=255)                        ccactcgaggagATGGGGGTTCTGTCCATTATCTGGGAGCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGCTTTAACCACGAGGCTGCGATGTCCCGGGGTTTTTTATTGTGTTGATGGGTTAGGa                                                                                                                             <  1:120487/138‑1 (MQ=255)                         cAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGt                                                                                                                                  >  2:969139/1‑143 (MQ=255)                          aacccagtgccataaagcgtatgtggcgggtacttagcccacgctttagcttgttcttactttccatcaattcctaacccatcaacacaataaaaaaccacggggctgcgatgccccgtggttTTTTATTGTGTTGATGGGtt                                                                                                                                 >  2:420142‑M2/124‑143 (MQ=255)                          aaCAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGATCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTACTGTGTTGATGGGtt                                                                                                                                 >  2:839879/1‑143 (MQ=255)                             aGTGGTGATGGTGGTTCTGGCCATTATCTGGGATGGCGCGGCAGGTGGTGAGGTGACCTCCAGCGCTCACTAAATCACTGAACGTTTGTTTTAACCACGGGGGTGGGGTGCCCCGTGGTTGTTTGTTGTGTTGTTGGGTTAgg                                                                                                                              >  2:339691/1‑143 (MQ=255)                               tggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCGCTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTGTTTATTGTGTTGATGGGTTAGGAATTGATg                                                                                                                      >  1:361589/1‑149 (MQ=255)                               tggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGCGGTTTTTTATTGTGTTGATGGGTCAGGaa                                                                                                                            >  2:1064183/1‑143 (MQ=255)                                ggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGCACCTTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGaag                                                                                                                           >  2:306371/1‑142 (MQ=255)                                   gATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATGTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTTATGTGTTGATGGGTTAGGAATTGATGGaaa                                                                                                                  <  1:797324/149‑1 (MQ=255)                                   gATGGTGGTTCGGGCCAGTGTCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGATGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGaaa                                                                                                                  <  1:420359/149‑1 (MQ=255)                                     tggtggTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATg                                                                                                                      <  2:309252/143‑1 (MQ=255)                                       gtggtTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTaa                                                                                                              >  1:770719/1‑149 (MQ=255)                                         ggtTCTGGCCATTATCTGGGAACGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCACACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTAATTGTGTTGCTGGGTTAGGAATTGATGGaaa                                                                                                                  >  2:388068/1‑143 (MQ=255)                                            gtatgtggcgggtacttagccccagctttagcttgttcttactttccatgaattcctaacccatcaacacaataaaaatcctcggggctgcgatgccccgtggttTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTa                                                                                                               <  2:98786‑M2/38‑1 (MQ=255)                                             cTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTaa                                                                                                              >  2:585678/1‑143 (MQ=255)                                                 acATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGGGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTa                                                                                                    <  1:352835/148‑1 (MQ=255)                                                  cATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTaa                                                                                                   >  1:390503/1‑149 (MQ=255)                                                    cgggtacttagcccacgctttagcttgttcttactttccatcaattcctaacccatcaacacaataaaaAACCACGGGGCATCGCAGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAg                                                                                                 <  1:488839‑M1/80‑1 (MQ=255)                                                         tGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTaaa                                                                                                  <  2:1048790/143‑1 (MQ=255)                                                          gggATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTggg                                                                                           >  1:197232/1‑149 (MQ=255)                                                            gATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCg                                                                                               >  2:561429/1‑143 (MQ=255)                                                            gATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCg                                                                                               >  2:640828/1‑143 (MQ=255)                                                                 cgcgGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTa                                                                                    >  1:1088854/1‑149 (MQ=255)                                                                     gCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAg                                                                                      <  2:527164/143‑1 (MQ=255)                                                                     ctttagcttgttcttactttccatcaattcctaacccatcaacacaataaaaaaccacggggctgcgatgccccgtggttTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCg                                                                                <  1:488839‑M2/69‑1 (MQ=255)                                                                        ggTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGAGGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCca                                                                             <  1:253681/149‑1 (MQ=255)                                                                         gtcgtcAGGTGACCTCCAGCGCTCACTAAATCAGTGAACATTTGTTTTACCCACGGGGCTGCGATGCCCCGCGGTTTTTTATTGGGTTGATGGGTTAGGAATTGCTGGAACGTCAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCcac                                                                            >  1:836886/1‑149 (MQ=255)                                                                             tcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATAc                                                                        >  1:574429/1‑149 (MQ=255)                                                                                 gTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCtt                                                                    >  1:66915/1‑149 (MQ=255)                                                                                  tGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCttt                                                                   <  1:811418/149‑1 (MQ=255)                                                                                   tactttccatcaattcctaacccatcaacacaataaaaAACCACGGGGCATCGCAGCCCCGAGGATTTTTATTGTGTTGATGGGTTAGGAATTCATGGAAAGTAAGAACAAGCTAAAGCTGGGGCTAAGTACCCGCCACATAc                                                                        <  2:98786‑M1/105‑1 (MQ=255)                                                                                   gACCTCCAGCGCTCACTAAATCCCTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                                  <  1:64836/149‑1 (MQ=255)                                                                                     ccTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAGCAGCGGGGCTGCGAGGCCCCGTGGATTTTTATGGTCTTGATGGGTTAGGGATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCGCCCACATCCGc                                                                      >  2:2618/1‑143 (MQ=255)                                                                                     ccTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAGTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGc                                                                      <  2:215880/143‑1 (MQ=255)                                                                                        gcAGGGCTCACTAAGGCGGGGAACATTTGTGTGAGCGACGGGGCGGCGGTGGCGCGTGGTTTTTTATTGTGTTGATGGGGTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCa                                                             <  1:1179462/148‑1 (MQ=255)                                                                                         cAGCGCTTACTACATCACCGACCATTTGTTTTAACCACGTGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                                  <  2:587618/143‑1 (MQ=255)                                                                                         cAGCGCTCACTAAATCCCTGAACATTTGTTTTAACCACGGGGTTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTTCCCGCCACATACGCTTTa                                                                  <  2:282063/143‑1 (MQ=255)                                                                                              cTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGt                                                       >  1:1087862/1‑149 (MQ=255)                                                                                              cTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGAGGCCCCGTGGTTTATTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTCCCCGCCACATACGCTTTATGGCa                                                             <  2:776079/143‑1 (MQ=255)                                                                                                   tAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGc                                                  >  1:177381/1‑149 (MQ=255)                                                                                                   tAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGAGTTCAGc                                                  >  1:230780/1‑149 (MQ=255)                                                                                                     aacccatcaacacaataaaaAACCACGGGGCATCGCAGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGtt                                                      >  2:420142‑M1/21‑143 (MQ=255)                                                                                                      aTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCaag                                               >  1:1119504/1‑148 (MQ=255)                                                                                                       tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGTGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                                              <  1:894265/149‑1 (MQ=255)                                                                                                       tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                                              <  1:993770/149‑1 (MQ=255)                                                                                                       tCACGGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                                              <  1:985555/149‑1 (MQ=255)                                                                                                        cACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAg                                                   <  2:608252/143‑1 (MQ=255)                                                                                                               cATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTgg                                            <  2:438024/143‑1 (MQ=255)                                                                                                               cATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTgg                                            <  2:946293/143‑1 (MQ=255)                                                                                                                   tGTTTTAACCACTGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGTTGGGTTAGGAATTGGTGGAAAGTAAGTACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCAcc                                        <  2:404134/143‑1 (MQ=255)                                                                                                                     ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGtt                                >  1:53497/1‑149 (MQ=255)                                                                                                                     ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGAAATTGGCACCGGGcgggt                                >  1:547452/1‑145 (MQ=255)                                                                                                                       ttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACGCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGc                                    >  2:126608/1‑143 (MQ=255)                                                                                                                       aaAACCACGGGGCATCGCAGCACCGTGGTTTTTTATTGTGTTGATGGGATAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCtttttt                              <  1:197460‑M1/147‑1 (MQ=255)                                                                                                                        tacCCACGGGGTTGCGATGCCCCGTGGTTTTTTATTGTGTTTATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTa                             >  1:509285‑M1/4‑149 (MQ=255)                                                                                                                        gAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAATTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTa                             >  1:1154845‑M1/2‑149 (MQ=255)                                                                                                                        aAACCACGGGGCATCGCAGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTa                             >  1:114519‑M1/2‑149 (MQ=255)                                                                                                                         AACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCGAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTg                                  >  2:723786‑M1/1‑143 (MQ=255)                                                                                                                            CACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGAGGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGttt                               >  2:1116692‑M1/1‑143 (MQ=255)                                                                                                                               GGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAGTGGCCCCGGGCTGTTTTACGGTTCg                      <  1:8305‑M1/149‑1 (MQ=255)                                                                                                                                GGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGTAATGGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCCAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACg                           >  2:555579‑M1/1‑143 (MQ=255)                                                                                                                                    tGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGa                 <  1:1071584/149‑1 (MQ=255)                                                                                                                                    tGCGATGCCCCGTGGTTTTTTATTGCGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTc                       <  2:337216/143‑1 (MQ=255)                                                                                                                                      cGATGCCCCGTGGTTATTTATTGTGTTGATTGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTGTCGGTTCga                     >  2:985224/1‑142 (MQ=255)                                                                                                                                                   ttTTTTATTGTGTGGATGGGTTAGGAATTGATGGAAAGTAAGAACAACCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGc  <  1:1253154‑M2/147‑1 (MQ=255)                                                                                                                                                   ttTTTTATTGGGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGc  <  1:510781‑M2/147‑1 (MQ=255)                                                                                                                                                     ttttATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCaaaa      >  2:15200/1‑143 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGACGCCATCAAAATGGC  >  CP009273/416266‑416560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.