New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	416386 =	64 (0.910)	3 (0.050)	5/248	NT	4.8%	intergenic (+20/‑56)	brnQ/proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
	?	CP009273	416414 =	59 (0.920)					intergenic (+48/‑28)	brnQ/proY	branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease

CCTGGGCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTA  >  CP009273/416239‑416533                                                                                                                                                    |                                                                                                                                                    gccattttgatggcgtctgccgaaccgtaaaacagcccggtgccaattgctgaacccagtgccataaagcgtatgtggcgggtacttagcccacgctttaggttgttcttactttccatcaattcctaacccatccacacaataaaaaa                                                                                                                                                    <  1:1253154‑M1/2‑1 (MQ=255) gccattttgatggcgtctgccgaaccgtaaaacagcccggtgccaattgctgaacccagtgccataaagcgtatgtggcgggtacttagcccacgctttagcttgttcttactttccatcaattcctaacccatcaacccaataaaaaa                                                                                                                                                    <  1:510781‑M1/2‑1 (MQ=255)          aGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCCCTAAATCACTGAACATTTGTTTTAACCa                                                                                                                                                 >  2:55007/1‑143 (MQ=255)            cGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCCCTGATCATTTGTTTTAACCACGGGGCTg                                                                                                                                         <  1:720471/149‑1 (MQ=255)            cGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTg                                                                                                                                         >  1:378486/1‑149 (MQ=255)                     cTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGcccc                                                                                                                                <  1:477254/149‑1 (MQ=255)                     cTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGcccc                                                                                                                                >  1:891749/1‑149 (MQ=255)                      tgcccGAACAGGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCg                                                                                                                               <  1:34958/146‑1 (MQ=255)                         ccGAACAAGGTCTGGCGTGGTTAGTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTgg                                                                                                                            <  1:905065/149‑1 (MQ=255)                            aaCAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGATTCTGGCCATTATCTGGGATCGCACGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCGCGTGGttt                                                                                                                         >  1:1115390/1‑149 (MQ=255)                              cAAGGGCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTg                                                                                                                             <  2:388427/143‑1 (MQ=255)                               aaGGTCTGGCGTTGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTATCCACGGGGCTGCGATGCCCCGTgg                                                                                                                            <  2:897410/143‑1 (MQ=255)                                 ggTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAt                                                                                                                    >  1:52218/1‑149 (MQ=255)                                  ctCTTGCGTGGTTAATGCCAACAGTGGTGATGGTGCTTCTGGCCATTATCTGGGATCGCGCGGCCGGTCGTCAGGTGCCCTCCAGCGCGCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                   <  1:22312/148‑1 (MQ=255)                                    cTGGCGGGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGGCCCGTGGTTTTTTATtgt                                                                                                                 <  1:957592/149‑1 (MQ=255)                                        cgcggTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGGCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                   <  2:243450/140‑1 (MQ=255)                                        cGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                   <  2:326930/143‑1 (MQ=255)                                        cGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTg                                                                                                             >  1:414603/1‑149 (MQ=255)                                          ttgTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCATCGCAGCCCCGTGGttaaaacaaat                                                                                                                 <  2:1116451/141‑10 (MQ=38)                                            gTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATgg                                                                                                         <  1:420209/149‑1 (MQ=255)                                             ttAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATggg                                                                                                        >  1:1261824/1‑149 (MQ=255)                                               aaTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTGTTTTATTGTGTTGa                                                                                                            >  2:914991/1‑143 (MQ=255)                                               aaTGCCAACAGTGGGGATGGTGGTTCTGGCCATTAGCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATGGTGTTGa                                                                                                            >  2:1140019/1‑143 (MQ=255)                                                   ccactcgaggagATGGGGGTTCTGTCCATTATCTGGGAGCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGCTTTAACCACGAGGCTGCGATGTCCCGGGGTTTTTTATTGTGTTGATGGGTTAGGa                                                                                                  <  1:120487/138‑1 (MQ=255)                                                    cAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGt                                                                                                       >  2:969139/1‑143 (MQ=255)                                                     aaCAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGATCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTACTGTGTTGATGGGtt                                                                                                      >  2:839879/1‑143 (MQ=255)                                                        aGTGGTGATGGTGGTTCTGGCCATTATCTGGGATGGCGCGGCAGGTGGTGAGGTGACCTCCAGCGCTCACTAAATCACTGAACGTTTGTTTTAACCACGGGGGTGGGGTGCCCCGTGGTTGTTTGTTGTGTTGTTGGGTTAgg                                                                                                   >  2:339691/1‑143 (MQ=255)                                                          tggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCGCTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTGTTTATTGTGTTGATGGGTTAGGAATTGATg                                                                                           >  1:361589/1‑149 (MQ=255)                                                          tggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGCGGTTTTTTATTGTGTTGATGGGTCAGGaa                                                                                                 >  2:1064183/1‑143 (MQ=255)                                                           ggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGCACCTTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGaag                                                                                                >  2:306371/1‑142 (MQ=255)                                                              gATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATGTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTTATGTGTTGATGGGTTAGGAATTGATGGaaa                                                                                       <  1:797324/149‑1 (MQ=255)                                                              gATGGTGGTTCGGGCCAGTGTCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGATGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGaaa                                                                                       <  1:420359/149‑1 (MQ=255)                                                                tggtggTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATg                                                                                           <  2:309252/143‑1 (MQ=255)                                                                  gtggtTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTaa                                                                                   >  1:770719/1‑149 (MQ=255)                                                                    ggtTCTGGCCATTATCTGGGAACGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCACACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTAATTGTGTTGCTGGGTTAGGAATTGATGGaaa                                                                                       >  2:388068/1‑143 (MQ=255)                                                                        cTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTaa                                                                                   >  2:585678/1‑143 (MQ=255)                                                                            acATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGGGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTa                                                                         <  1:352835/148‑1 (MQ=255)                                                                             cATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTaa                                                                        >  1:390503/1‑149 (MQ=255)                                                                               cgggtacttagcccacgctttagcttgttcttactttccatcaattcctaacccatcaacacaataaaaAACCACGGGGCATCGCAGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAg                                                                      <  1:488839‑M1/80‑1 (MQ=255)                                                                                    tGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTaaa                                                                       <  2:1048790/143‑1 (MQ=255)                                                                                     gggATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTggg                                                                >  1:197232/1‑149 (MQ=255)                                                                                       gATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCg                                                                    >  2:561429/1‑143 (MQ=255)                                                                                       gATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCg                                                                    >  2:640828/1‑143 (MQ=255)                                                                                            cgcgGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTa                                                         >  1:1088854/1‑149 (MQ=255)                                                                                                gCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAg                                                           <  2:527164/143‑1 (MQ=255)                                                                                                   ggTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGAGGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCca                                                  <  1:253681/149‑1 (MQ=255)                                                                                                    gtcgtcAGGTGACCTCCAGCGCTCACTAAATCAGTGAACATTTGTTTTACCCACGGGGCTGCGATGCCCCGCGGTTTTTTATTGGGTTGATGGGTTAGGAATTGCTGGAACGTCAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCcac                                                 >  1:836886/1‑149 (MQ=255)                                                                                                        tcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATAc                                             >  1:574429/1‑149 (MQ=255)                                                                                                            gTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCtt                                         >  1:66915/1‑149 (MQ=255)                                                                                                             tGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCttt                                        <  1:811418/149‑1 (MQ=255)                                                                                                              tactttccatcaattcctaacccatcaacacaataaaaAACCACGGGGCATCGCAGCCCCGAGGATTTTTATTGTGTTGATGGGTTAGGAATTCATGGAAAGTAAGAACAAGCTAAAGCTGGGGCTAAGTACCCGCCACATAc                                             <  2:98786‑M1/105‑1 (MQ=255)                                                                                                              gACCTCCAGCGCTCACTAAATCCCTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                       <  1:64836/149‑1 (MQ=255)                                                                                                                ccTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAGCAGCGGGGCTGCGAGGCCCCGTGGATTTTTATGGTCTTGATGGGTTAGGGATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCGCCCACATCCGc                                           >  2:2618/1‑143 (MQ=255)                                                                                                                ccTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAGTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGc                                           <  2:215880/143‑1 (MQ=255)                                                                                                                   gcAGGGCTCACTAAGGCGGGGAACATTTGTGTGAGCGACGGGGCGGCGGTGGCGCGTGGTTTTTTATTGTGTTGATGGGGTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCa                                  <  1:1179462/148‑1 (MQ=255)                                                                                                                    cAGCGCTTACTACATCACCGACCATTTGTTTTAACCACGTGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                       <  2:587618/143‑1 (MQ=255)                                                                                                                    cAGCGCTCACTAAATCCCTGAACATTTGTTTTAACCACGGGGTTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTTCCCGCCACATACGCTTTa                                       <  2:282063/143‑1 (MQ=255)                                                                                                                         cTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGt                            >  1:1087862/1‑149 (MQ=255)                                                                                                                         cTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGAGGCCCCGTGGTTTATTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTCCCCGCCACATACGCTTTATGGCa                                  <  2:776079/143‑1 (MQ=255)                                                                                                                              tAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGc                       >  1:177381/1‑149 (MQ=255)                                                                                                                              tAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGAGTTCAGc                       >  1:230780/1‑149 (MQ=255)                                                                                                                                aacccatcaacacaataaaaAACCACGGGGCATCGCAGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGtt                           >  2:420142‑M1/21‑143 (MQ=255)                                                                                                                                 aTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCaag                    >  1:1119504/1‑148 (MQ=255)                                                                                                                                  tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGTGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                   <  1:894265/149‑1 (MQ=255)                                                                                                                                  tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                   <  1:993770/149‑1 (MQ=255)                                                                                                                                  tCACGGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                   <  1:985555/149‑1 (MQ=255)                                                                                                                                   cACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAg                        <  2:608252/143‑1 (MQ=255)                                                                                                                                          cATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTgg                 <  2:438024/143‑1 (MQ=255)                                                                                                                                          cATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTgg                 <  2:946293/143‑1 (MQ=255)                                                                                                                                              tGTTTTAACCACTGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGTTGGGTTAGGAATTGGTGGAAAGTAAGTACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCAcc             <  2:404134/143‑1 (MQ=255)                                                                                                                                                ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGtt     >  1:53497/1‑149 (MQ=255)                                                                                                                                                ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGAAATTGGCACCGGGcgggt     >  1:547452/1‑145 (MQ=255)                                                                                                                                                  ttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACGCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGc         >  2:126608/1‑143 (MQ=255)                                                                                                                                                  aaAACCACGGGGCATCGCAGCACCGTGGTTTTTTATTGTGTTGATGGGATAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCtttttt   <  1:197460‑M1/147‑1 (MQ=255)                                                                                                                                                   gAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAATTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTa  >  1:1154845‑M1/2‑149 (MQ=255)                                                                                                                                                   aAACCACGGGGCATCGCAGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTa  >  1:114519‑M1/2‑149 (MQ=255)                                                                                                                                                    AACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCGAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTg       >  2:723786‑M1/1‑143 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCTGGGCGCAGCGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTA  >  CP009273/416239‑416533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.