mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,992,438 | 0 | T | G | 20.0% | 133.9 / 27.9 | 65 | L429* (TTA→TGA) | cyaA | adenylate cyclase |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3992468 | 50 (0.910) | 10 (0.180) | 10/504 | 3.4 | 16.7% | coding (1316/2547 nt) | cyaA | adenylate cyclase |
| ? | NC_000913 | 3992473 = | 50 (0.910) | coding (1321/2547 nt) | cyaA | adenylate cyclase | |||||
| * | ? | NC_000913 | 3357824 = | 52 (0.940) | 3 (0.060) | 3/480 | 5.8 | 5.7% | coding (3100/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | 3358927 = | 49 (0.930) | coding (4203/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913 | = 1133632 | 61 (1.150) | 5 (0.090) +ACCCTG |
3/474 | 5.8 | 7.6% | coding (1059/1209 nt) | flgE | flagellar hook protein |
| ? | NC_000913 | 1133633 = | 61 (1.100) | coding (1060/1209 nt) | flgE | flagellar hook protein | |||||
| * | ? | NC_000913 | 3733010 = | 49 (0.890) | 3 (0.060) | 3/492 | 5.9 | 4.9% | coding (810/1542 nt) | xylG | D‑xylose ABC transporter dual domain ATPase |
| ? | NC_000913 | 3733919 = | 69 (1.280) | coding (200/1182 nt) | xylH | D‑xylose ABC transporter permease | |||||
| * | ? | NC_000913 | 3360041 = | 44 (0.800) | 3 (0.060) | 3/488 | 5.9 | 6.6% | coding (844/1419 nt) | gltD | glutamate synthase, 4Fe‑4S protein, small subunit |
| ? | NC_000913 | 3360672 = | NA (NA) | intergenic (+56/‑504) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein | |||||
| * | ? | NC_000913 | = 3154353 | 43 (0.780) | 3 (0.060) | 3/486 | 5.9 | 6.9% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | NC_000913 | = 3154366 | 39 (0.730) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | NC_000913 | = 3068492 | 42 (0.760) | 3 (0.060) | 3/492 | 5.9 | 6.9% | coding (317/636 nt) | argO | arginine transporter |
| ? | NC_000913 | = 3068686 | 40 (0.740) | coding (123/636 nt) | argO | arginine transporter | |||||
| * | ? | NC_000913 | 2887324 = | 51 (0.920) | 3 (0.060) | 3/488 | 5.9 | 6.6% | intergenic (‑105/‑30) | ygcB/sokX | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/sok‑related sRNA, function unknown |
| ? | NC_000913 | 2887735 = | 36 (0.670) | coding (578/735 nt) | cysH | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent | |||||
| * | ? | NC_000913 | 2192870 = | 46 (0.830) | 5 (0.090) | 3/488 | 5.9 | 10.2% | intergenic (‑74/+189) | yehE/mrp | DUF2574 family protein/antiporter inner membrane protein |
| ? | NC_000913 | 2193252 = | 44 (0.820) | coding (917/1110 nt) | mrp | antiporter inner membrane protein | |||||
| * | ? | NC_000913 | = 1877275 | 66 (1.190) | 3 (0.060) | 3/488 | 5.9 | 4.5% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | NC_000913 | = 1877290 | 62 (1.160) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||