New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1133632	61 (1.150)	5 (0.090) +ACCCTG	3/474	5.8	7.6%	coding (1059/1209 nt)	flgE	flagellar hook protein
	?	NC_000913	1133633 =	61 (1.100)					coding (1060/1209 nt)	flgE	flagellar hook protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAACTCCATGCAGCAAAATACCGGCGCTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCAGTAATCTGGCCAATGC  >  NC_000913/1133361‑1133887                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                               tCAACTCCATGCAGCAAAATACCGGCGCTAACAGTATTGTGGCAACCACCCAGAGCGGCTACAAACCGGGCGATCGGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCCACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑Acc                                                                                                                                                                                                                                                              <  1:496178/275‑1 (MQ=255)     cTCCATGCAGCAAAATACCGGCGCTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCCACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGa                                                                                                                                                                                                                                                          >  2:13004/1‑275 (MQ=255)          tGCAGCAAAATACCGGCGCTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAAc                                                                                                                                                                                                                                                     >  2:93635/1‑275 (MQ=255)          tGCAGCAAAATACCGGCGCTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAAc                                                                                                                                                                                                                                                     >  1:489845/1‑275 (MQ=255)               caAAATACCGGCGCTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTACTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCCAACTTTGCCAACAACGAAGGTCTGGCATCCGCAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCTCTGTGGGGGACAGCCGGGGAGGGAAAACTGGGC‑‑‑‑‑‑CTCCTGACCCACGGGgc                                                                                                                                                                                                                                                >  2:95591/1‑275 (MQ=255)                         gcgcTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAAAGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAACCTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGGGCGCTGGAAGc                                                                                                                                                                                                                                       >  2:503947/1‑274 (MQ=255)                           tcTAACAATGTTACGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGAAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTc                                                                                                                                                                                                                                    <  2:229016/274‑1 (MQ=255)                            cTAACAATATTGTGGCAACCACCCAGAACGGCTACCAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTAAGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTATGGCGTGGCCCTGTTTGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCACCGGTGCCGTGGAAGCGTcc                                                                                                                                                                                                                                   >  1:173555/1‑275 (MQ=255)                                     ttGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACGATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAt                                                                                                                                                                                                                          <  2:242401/275‑1 (MQ=255)                                     ttGTGGCAACACCCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCTGCAACGATTCCAACGAACAAACCCAACTTCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAt                                                                                                                                                                                                                          <  1:430543/275‑1 (MQ=255)                                     gtttgGCAACCACCCAGAACGGCTCCAAAACGGGCGATCTTGTGAGTTATCAAATCAATGAGGACGGTACGGTTGTCGGCAACTATTCCAACGACCAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAt                                                                                                                                                                                                                          <  2:2845/272‑1 (MQ=255)                                     atgcggCAACCACCCAGAACGGCGACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACGGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAt                                                                                                                                                                                                                          <  2:207039/271‑1 (MQ=255)                                       gtgGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGAAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGCCGGGAAACGTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAcct                                                                                                                                                                                                                        >  2:289578/1‑275 (MQ=255)                                       gcggCAACCACCCAGAACGGCTACAAACCGGGCTATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAtct                                                                                                                                                                                                                        <  2:177068/273‑1 (MQ=255)                                        tgGCACCCACCCAGAACGGCGACAAGCCTGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGGCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAtct                                                                                                                                                                                                                        <  2:22739/274‑1 (MQ=255)                                        tgGCACACACCAAGACCGGCTCAAAACCGGGCGAGCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACGGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAtct                                                                                                                                                                                                                        <  2:18465/274‑1 (MQ=255)                                        tgGCAACCACCGAGAACGGCTACGAACGGTGCGATCTGGTGTGTTATCAAATCAATGATGACGGTACGTTTGTGGGCAACTATTTCAACGAACAAGCCCAACGTCTGGGGCAGATTGTACTGGCGAGCTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGTTCTGCGACGCAATCTTCTGGCGTGGCGCTTTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTGGAtct                                                                                                                                                                                                                        <  1:293240/274‑1 (MQ=255)                                        tgGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACgg                                                                                                                                                                                                                                                   >  1:390804/1‑247 (MQ=255)                                        tgGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACgg                                                                                                                                                                                                                                                   <  2:390803/247‑1 (MQ=255)                                        cggCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGAtct                                                                                                                                                                                                                        <  2:364534/273‑1 (MQ=255)                                                       caggcgcaaaaCCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                                                                                                                                                                         <  2:173554/266‑1 (MQ=255)                                                       aCGGCTACAAACCGGGTCATCTGGGTAGTTATGAAATCAATGATGACGGGACGGTTGTTGGAAACTAGTCCAACGAACAACACCAACGGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                                                                                                                                                                         <  1:297349/274‑1 (MQ=255)                                                            tACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                                                                                                                                                                   <  2:259557/275‑1 (MQ=255)                                                                     ggCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACATCGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGACCTGGTCAATATGATCGTTGc                                                                                                                                                                                          >  2:360210/1‑275 (MQ=255)                                                                     ggCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGATGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGTGCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACCGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGCAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                                                                                                                                                                          >  1:504674/1‑275 (MQ=255)                                                                      gCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGcc                                                                                                                                                                                         <  2:170559/275‑1 (MQ=255)                                                                            tGGTGAGTTATAAAATCAATGATGGCGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGt                                                                                                                                                                                   <  2:512103/275‑1 (MQ=255)                                                                                  gTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAt                                                                                                                                                                             <  1:93636/275‑1 (MQ=255)                                                                                     atcaaatcaaTGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCt                                                                                                                                                                                                                                             >  1:311501/1‑208 (MQ=255)                                                                                        aaatcaaTGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCAAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATTCTCGTTGCCCAGCGTAACTATCAGTCt                                                                                                                                                                       <  1:197889/275‑1 (MQ=255)                                                                                               tgatgaCGTTACTGTTGTCGGCAACTATGCCAACGACCAAACCCAAATGCTGGGGCAGATTGGACGGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTGCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGcc                                                                                                                                                                 <  1:88165/274‑1 (MQ=255)                                                                                               tgatgaCGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAACCTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGCGCGCTGGAAGCGGTCCACGTCGCTCTCAGCAAAGAACTGGGCAATATGGTCGTTGCCCAGCGCAACTATCAGGCTAAccgc                                                                                                                                                                 >  2:1391/1‑271 (MQ=255)                                                                                                   gacgggacggTTGTCGGCAACTATTCCAACGAACAAACCCAGCTGCTGGGGCAGAGTGTACTGGCGAACTTGGCCAACACCGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCTACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCTTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCATTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc                                                                                                                                                            <  1:478796/275‑1 (MQ=255)                                                                                                        tacggtTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGACGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGGAACTATCAGTCCAACGCCCAGAACATCa                                                                                                                                                       >  2:115409/1‑275 (MQ=255)                                                                                                                  ggCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGGCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATGGTTGCCCAGCGTAACTATCAGTCTACAGCCCAGACCATCAAAACCCAgg                                                                                                                                              >  1:303019/1‑274 (MQ=255)                                                                                                                       cTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGa                                                                                                                                        >  1:26167/1‑275 (MQ=255)                                                                                                                          ttCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATcc                                                                                                                                     >  2:15952/1‑275 (MQ=255)                                                                                                                                ccaaCAAACCCAACGGCTGGGGCAAATTGTCCTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAaca                                                                                                                               <  2:303018/273‑1 (MQ=255)                                                                                                                                  aaCAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAacac                                                                                                                              <  1:15952/274‑1 (MQ=255)                                                                                                                                  aaCAAACCCAACGGGGGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGGGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAacac                                                                                                                              <  2:504673/274‑1 (MQ=255)                                                                                                                                            aCTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACATCGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACt                                                                                                                   <  1:360211/275‑1 (MQ=255)                                                                                                                                                     gCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGCACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCCTCAAAACCCAGGACCAGATCCTCCACAACCTGGTTAACTTActccaa                                                                                                           >  2:378217/1‑269 (MQ=255)                                                                                                                                                           tGTACTGGCGAACTTTCGCAACAACGAAGGTCGGGGATCCGAAGTCGAAAACGTCTGGTCTGCGACGACATCTGCTGGCCTTGCGCTGTTGGGGACAGCCGGGACGGGAAATTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGa                                                                                                    <  1:503948/275‑1 (MQ=255)                                                                                                                                                           gttgcTGGAGAACTTGGCCAACAAGGAGGGTCTGGCACCCGACGGCGACATTGTCTGGTTGGGGACGCGACGTTCTGGCGTGCCGCTGTTGGGGCCGGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCGGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCTCAGCGTAACTATCAGTCTAACGCCCATACCAGCAAAGCCCAGGGCGAGATCCTCAACACTCTGGTTAACTTACGCTAATCGCTGa                                                                                                    <  2:452858/271‑1 (MQ=255)                                                                                                                                                                 ggCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGa                                                                                               <  2:26167/274‑1 (MQ=255)                                                                                                                                                                  gCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑CCCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCCGCGTAACTATCAGTCTAACGCCCAGCACATCAAAAACCAGGACCAGATCCCCAACACGCTGGTTAAC‑TACGCTAATCGCCGACGGTAtc                                                                                             >  2:472459/1‑273 (MQ=255)                                                                                                                                                                   cGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACg                                                                                                  >  1:76750/1‑275 (MQ=255)                                                                                                                                                                       cTTTGCCAACAACGAAGGTCTGGCATCCGCAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAACCTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCGGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATAATCGTTGCCCAGCGGAACTATCTGTCTAACGCCCAGACCATCAACACCCAGGACCATAGCCTTAACACGCTGGTTAAATTACGCTAAACGCCGAACGCATAGCTCa                                                                                        >  2:343959/1‑275 (MQ=255)                                                                                                                                                                         ttGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAg                                                                                            <  2:76749/275‑1 (MQ=255)                                                                                                                                                                                                tCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCGTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCGCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGa                                                               <  1:95592/275‑1 (MQ=255)                                                                                                                                                                                                  cGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATg                                                             >  2:276473/1‑275 (MQ=255)                                                                                                                                                                                                    aaGGGGGCAACGTTTGTGCGGGGAAGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATggg                                                           <  2:473679/275‑1 (MQ=255)                                                                                                                                                                                                          aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGagcagc                                                     <  1:378218/275‑1 (MQ=255)                                                                                                                                                                                                                               aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACCCTGAATCAACa                                >  1:97386/1‑275 (MQ=255)                                                                                                                                                                                                                                      tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCCATTTATACCGCGATGGGAGCAGCCAGCCAGACACCGAATCAACCGGCg                            >  1:107249/1‑272 (MQ=255)                                                                                                                                                                                                                                       ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTa                         <  1:13004/274‑1 (MQ=255)                                                                                                                                                                                                                                        gcgtggctGTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAAc                       <  2:237102/275‑1 (MQ=255)                                                                                                                                                                                                                                         aagagacaggTTAGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCGGAACAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGTGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAAc                       <  1:24603/265‑1 (MQ=255)                                                                                                                                                                                                                                           tggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGc                    >  1:14913/1‑275 (MQ=255)                                                                                                                                                                                                                                             gtgcggTTGGGGACAGGCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCGGACAAACGGTGCGCGGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCa                  <  2:489844/270‑1 (MQ=255)                                                                                                                                                                                                                                                           aGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCAGTAATCTGGCCaa     <  1:276474/274‑1 (MQ=255)                                                                                                                                                                                                                                                             ccGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCCGATCCTCAACACGCTGGTTAACTTACGCTAATCACTGACGGGATAGCTCACTGGATCCCGCAATTTATACCACGATGGGGGCAGCCAGCCAGACCCTGAATCAACAGGCGGTCACCGCCAGTAAGCTCGCCAATGc  >  2:362920/1‑275 (MQ=255)                                                                                                                                                                                                                                                             ccGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGc                             >  2:120319/1‑248 (MQ=255)                                                                                                                                                                                                                                                             ccGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCCCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCCGACACTGCAACAAACGGCGGTAACCCACAGTAATcctgtccccta  >  2:24603/1‑265 (MQ=255)                                                                                                                                                                                                                                                               gggacgggaAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTtat                                                                      <  2:215752/205‑1 (MQ=255)                                                                                                                                                                                                                                                                 gacgggaAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTa                         <  1:120320/248‑1 (MQ=255)                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                               TCAACTCCATGCAGCAAAATACCGGCGCTAACAATATTGTGGCAACCACCCAGAACGGCTACAAACCGGGCGATCTGGTGAGTTATCAAATCAATGATGACGGTACGGTTGTCGGCAACTATTCCAACGAACAAACCCAACTGCTGGGGCAGATTGTACTGGCGAACTTTGCCAACAACGAAGGTCTGGCATCCGAAGGCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGC‑‑‑‑‑‑ACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCAGGACCAGATCCTCAACACGCTGGTTAACTTACGCTAATCGCTGACGGGATAGCTCAATGGATCACGCAATTTATACCGCGATGGGAGCAGCCAGCCAGACACTGAATCAACAGGCGGTAACCGCCAGTAATCTGGCCAATGC  >  NC_000913/1133361‑1133887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.