mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,049,986 | 0 | G | T | 21.1% | 81.3 / 17.3 | 38 | noncoding (88/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| Marginal new junction evidence (lowest skew 10 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 31 (0.780) | 9 (0.260) | 8/232 | 3.0 | 28.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 19 (0.540) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4639553 | 52 (1.310) | 6 (0.170) | 6/240 | 3.8 | 11.0% | intergenic (+23/+37) | creD/arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| ? | NC_000913 | = 4639557 | 50 (1.380) | intergenic (+27/+33) | creD/arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA | |||||
| * | ? | NC_000913 | 2640602 = | 45 (1.130) | 5 (0.130) | 5/250 | 4.3 | 10.7% | intergenic (‑27/+84) | hisS/ispG | histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase |
| ? | NC_000913 | 2640649 = | 41 (1.090) | intergenic (‑74/+37) | hisS/ispG | histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase | |||||
| * | ? | NC_000913 | = 1484967 | 37 (0.930) | 5 (0.130) | 5/246 | 4.3 | 13.2% | coding (1907/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913 | = 1484972 | 31 (0.840) | coding (1912/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
| * | ? | NC_000913 | 980140 = | 40 (1.000) | 6 (0.160) | 5/248 | 4.3 | 15.1% | coding (3815/4461 nt) | mukB | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| ? | NC_000913 | 980177 = | 30 (0.800) | coding (3852/4461 nt) | mukB | chromosome condensin MukBEF, ATPase and DNA‑binding subunit | |||||
| * | ? | NC_000913 | 944904 = | 38 (0.950) | 6 (0.160) | 5/248 | 4.3 | 14.5% | intergenic (+8/+27) | dmsC/ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| ? | NC_000913 | 944926 = | 35 (0.940) | intergenic (+30/+5) | dmsC/ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase | |||||
| * | ? | NC_000913 | = 690837 | 35 (0.880) | 5 (0.130) | 5/246 | 4.3 | 13.4% | coding (45/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
| ? | NC_000913 | = 690850 | 32 (0.860) | coding (32/1539 nt) | lnt | apolipoprotein N‑acyltransferase | |||||
| * | ? | NC_000913 | = 609415 | 43 (1.080) | 5 (0.130) | 5/248 | 4.3 | 10.8% | intergenic (+238/+44) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | = 609431 | 42 (1.120) | intergenic (+254/+28) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 3058431 | 38 (0.950) | 5 (0.130) | 5/252 | 4.4 | 12.5% | intergenic (‑21/+235) | serA/rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| ? | NC_000913 | = 3058468 | 34 (0.890) | intergenic (‑58/+198) | serA/rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive | |||||
| * | ? | NC_000913 | 689567 = | 26 (0.650) | 5 (0.130) | 5/252 | 4.4 | 17.9% | coding (1315/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
| ? | NC_000913 | 689599 = | 21 (0.550) | coding (1283/1539 nt) | lnt | apolipoprotein N‑acyltransferase | |||||