New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1484967	37 (0.930)	5 (0.130)	5/246	4.3	13.2%	coding (1907/3903 nt)	hrpA	putative ATP‑dependent helicase
	?	NC_000913	= 1484972	31 (0.840)					coding (1912/3903 nt)	hrpA	putative ATP‑dependent helicase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACTATCTGCGCGTGCGCGAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGTAGAAACCAGCCGCCTGTGG  >  NC_000913/1484819‑1485100                                                                                                                                                     |                                                                                                                                      aaCTATCTGCGCGTGCGCGAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCAt                                                                                                                                       >  5:27420/1‑149 (MQ=255)      tCTGCGCGTGCGCGAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGaaa                                                                                                                                   <  6:27420/148‑1 (MQ=255)      tCTGCGCGTGCGCGAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGaa                                                                                                                                    <  8:3498/147‑1 (MQ=255)         gcgcgtgcgcgAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGAt                                                                                                                                <  4:91097/148‑1 (MQ=255)          cgcgtgcgcgAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAg                                                                                                                                  <  6:123353/145‑1 (MQ=255)          cgcgtgcgcgAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGAt                                                                                                                                <  6:154284/147‑1 (MQ=255)          cgcgtgcgcgAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGc                                                                                                                              <  6:177056/149‑1 (MQ=255)                        gCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGaa                                                                                                                 >  4:23014/1‑148 (MQ=255)                         cAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAata                                                                                                               <  3:23014/149‑1 (MQ=255)                                                       gtgAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAAcgc                                                                                             >  7:76704/1‑137 (MQ=255)                                                       gtgAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAAcgc                                                                                             <  8:76704/137‑1 (MQ=255)                                                         gAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCg                                                                                                          >  6:34883/1‑122 (MQ=255)                                                         gAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCg                                                                                                          <  5:34883/122‑1 (MQ=255)                                                                     cATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTg                                                                   <  6:147596/149‑1 (MQ=255)                                                                      aTTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTgg                                                                  >  5:65826/1‑149 (MQ=255)                                                                      aTTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTATCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAAc                                                                                               >  6:28496/1‑120 (MQ=255)                                                                           ggTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTAt                                                             >  8:51178/1‑149 (MQ=255)                                                                                aCAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGTATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCaa                                                         >  4:100993/1‑148 (MQ=255)                                                                                   gCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCaaaaaa                                                     >  8:87793/1‑149 (MQ=255)                                                                                           gcggAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTa                                              >  2:181062/1‑148 (MQ=255)                                                                                           gcggAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTa                                              >  4:32642/1‑148 (MQ=255)                                                                                            cggAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCaaaaaa                                                     >  4:17020/1‑140 (MQ=255)                                                                                            cggAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCaaaaaa                                                     <  3:17020/140‑1 (MQ=255)                                                                                             ggAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAAt                                           >  5:88985/1‑149 (MQ=255)                                                                                                gTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATggg                                        <  1:181062/149‑1 (MQ=255)                                                                                                     gcgAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAAtg                                   <  7:87793/149‑1 (MQ=255)                                                                                                          aTTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGTATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGc                              <  3:100993/149‑1 (MQ=255)                                                                                                                 ttGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTg                       <  6:65826/149‑1 (MQ=255)                                                                                                                 ttGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTg                       <  6:88985/149‑1 (MQ=255)                                                                                                                    cGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGt                     <  7:51178/148‑1 (MQ=255)                                                                                                                         cTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCt                                               >  4:114580/1‑117 (MQ=255)                                                                                                                         cTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCt                                               <  3:114580/117‑1 (MQ=255)                                                                                                                          tGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGTa                    >  2:143441/1‑143 (MQ=255)                                                                                                                          tGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGTa                    <  1:143441/143‑1 (MQ=255)                                                                                                                                    aCTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGTAGAAACCAGCCGCCtgt    >  3:64556/1‑149 (MQ=255)                                                                                                                                      tttCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAAt                                           >  2:101115/1‑108 (MQ=255)                                                                                                                                      tttCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAAt                                           <  1:101115/108‑1 (MQ=255)                                                                                                                                      tttCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGTAGAAACCAGCCGCCTGTgg  >  1:165959/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                      AACTATCTGCGCGTGCGCGAATGGCAGGATATCTACACCCAGTTGCGTCAGGTGGTGAAAGAACTTGGCATTCCGGTTAACAGCGAACCGGCGGAGTATCGCGAAATTCACATTGCGTTGCTGACCGGTTTACTTTCCCATATCGGCATGAAAGATGCCGATAAACAAGAATATACCGGCGCACGTAACGCGCGTTTCTCCATCTTCCCCGGTTCTGGTTTATTCAAAAAACCGCCTAAATGGGTAATGGTGGCGGAACTGGTAGAAACCAGCCGCCTGTGG  >  NC_000913/1484819‑1485100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.