| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,867,796 | IS1 (+) +9 bp | coding (950‑958/1140 nt) | nlpD ← | activator of AmiC murein hydrolase activity, lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2867796 = | 0 (0.000) | 29 (0.790) | 28/260 | 0.5 | 100% | coding (958/1140 nt) | nlpD | activator of AmiC murein hydrolase activity, lipoprotein |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 2867804 | 0 (0.000) | 35 (0.950) | 30/260 | 0.4 | 100% | coding (950/1140 nt) | nlpD | activator of AmiC murein hydrolase activity, lipoprotein |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
AAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGTTTCGA > NC_000913/2867672‑2867948 | aaaTGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc < 3:79809‑M1/144‑12 (MQ=255)aaaTGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc > 4:79809‑M1/1‑133 (MQ=255) cAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactg < 5:50577‑M1/149‑22 (MQ=255) ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAAt < 7:101874‑M1/19‑1 (MQ=255) ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAAt > 8:101874‑M1/115‑133 (MQ=255) gtTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc < 1:361‑M1/132‑12 (MQ=255) gtTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc > 2:361‑M1/1‑121 (MQ=255) gcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATc < 1:435‑M1/20‑1 (MQ=255) gcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATc > 2:435‑M1/112‑131 (MQ=255) gTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatg < 5:94257‑M1/148‑37 (MQ=255) cTACCCATGGTCGCTTTTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttga < 1:7596‑M1/149‑47 (MQ=255) tcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATa < 1:153853‑M1/55‑1 (MQ=255) gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATaaa < 4:152126‑M1/57‑1 (MQ=255) cccATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGGACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt < 1:189441‑M1/149‑50 (MQ=255) tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc > 3:59590‑M1/90‑137 (MQ=255) tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc < 4:59590‑M1/48‑1 (MQ=255) tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaa < 1:56429‑M1/60‑1 (MQ=255) aTGGTCGCTATTTTTTGCCCCTCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:63363‑M1/1‑97 (MQ=255) aTGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 5:87605‑M1/1‑97 (MQ=255) tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcg > 1:39787‑M1/88‑149 (MQ=255) ttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg < 8:82408‑M1/65‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCt > 7:82408‑M1/79‑149 (MQ=255) tttGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaactttctgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg > 7:80598‑M1/1‑84 (MQ=255) ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 5:115515‑M1/149‑70 (MQ=255) ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttt > 2:20635‑M1/1‑80 (MQ=255) ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttt < 1:20635‑M1/122‑43 (MQ=255) ccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtg > 1:181187‑M1/1‑78 (MQ=255) ccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtg < 2:181187‑M1/107‑30 (MQ=255) agctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGa > 3:152126‑M1/69‑149 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGtt < 1:132286‑M1/46‑1 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGtt > 2:132286‑M1/64‑109 (MQ=255) aaCTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagct < 4:61012‑M1/148‑78 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaac < 8:77809‑M1/58‑1 (MQ=255) caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAgcgc < 7:144288‑M1/43‑1 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTc > 2:56429‑M1/57‑149 (MQ=255) tgttgtTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttga > 8:42984‑M1/1‑64 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCt > 4:119656‑M1/52‑146 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATATGCGGTCGCGATAATTGCCTGTCCt < 3:119656‑M1/95‑1 (MQ=255) ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt < 2:63363‑M1/148‑90 (MQ=255) ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgat > 8:118400‑M1/1‑59 (MQ=255) ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgat < 7:118400‑M1/94‑36 (MQ=255) cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 1:105622‑M1/101‑45 (MQ=255) cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt > 2:105622‑M1/1‑57 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGa < 6:131558‑M1/108‑1 (MQ=255) aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtga < 4:74134‑M1/54‑6 (MQ=255) aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtga > 3:74134‑M1/1‑49 (MQ=255) ttGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggg > 1:49104‑M1/1‑45 (MQ=255) cataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAt > 2:153853‑M1/35‑149 (MQ=255) cataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAt < 4:38180‑M1/115‑1 (MQ=255) ttATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc < 6:40233‑M1/147‑111 (MQ=255) ttATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc > 5:40233‑M1/1‑37 (MQ=255) cactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCttg < 7:36944‑M1/122‑1 (MQ=255) tcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGcc < 1:84684‑M1/127‑1 (MQ=255) aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc > 6:55185‑M1/1‑23 (MQ=255) aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc < 5:55185‑M1/133‑111 (MQ=255) aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 2:186115‑M1/67‑45 (MQ=255) aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt > 1:186115‑M1/1‑23 (MQ=255) tcatcaTTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacat > 8:64012‑M1/1‑13 (MQ=255) accCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAg < 8:88988‑M1/146‑1 (MQ=255) cCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGt < 5:29730‑M1/148‑1 (MQ=255) catTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc > 6:173946‑M1/1‑9 (MQ=255) tATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgc > 4:87731‑M1/1‑6 (MQ=255) tGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGTTTCGa < 7:88988/148‑1 (MQ=255) | AAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGTTTCGA > NC_000913/2867672‑2867948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |