mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4123819 | 111 (1.220) | 4 (0.050) | 4/248 | NT | 3.8% | coding (638/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| ? | NC_000913 | = 4123864 | 100 (1.160) | coding (593/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon | |||||
| * | ? | NC_000913 | 4065608 = | 99 (1.090) | 4 (0.040) | 4/258 | NT | 4.0% | coding (159/1404 nt) | yihO | putative sulphoquinovose importer |
| ? | NC_000913 | 4065626 = | 94 (1.050) | coding (141/1404 nt) | yihO | putative sulphoquinovose importer | |||||
| * | ? | NC_000913 | 2716018 = | 87 (0.960) | 3 (0.040) | 3/238 | NT | 3.9% | intergenic (+8/+48) | eamB/grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| ? | NC_000913 | 2716046 = | 69 (0.840) | intergenic (+36/+20) | eamB/grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor | |||||
| * | ? | NC_000913 | 2345586 = | 83 (0.910) | 3 (0.030) | 3/248 | NT | 3.7% | coding (722/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| ? | NC_000913 | 2345658 = | 78 (0.910) | coding (794/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | = 1804095 | 63 (0.690) | 3 (0.030) | 3/250 | NT | 4.4% | pseudogene (578/1476 nt) | arpB | pseudogene, ankyrin repeats |
| ? | NC_000913 | = 1804113 | 70 (0.810) | pseudogene (596/1476 nt) | arpB | pseudogene, ankyrin repeats | |||||
| * | ? | NC_000913 | = 1390821 | 89 (0.980) | 4 (0.050) | 4/250 | NT | 4.6% | pseudogene (42/138 nt) | ymjC | pseudogene |
| ? | NC_000913 | = 1390830 | 81 (0.940) | pseudogene (33/138 nt) | ymjC | pseudogene | |||||
| * | ? | NC_000913 | = 1201875 | 94 (1.040) | 3 (0.030) | 3/250 | NT | 3.3% | coding (210/309 nt) | ymfJ | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1201898 | 85 (0.980) | coding (187/309 nt) | ymfJ | e14 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 812971 | 103 (1.130) | 4 (0.050) | 4/236 | NT | 3.8% | intergenic (+24/‑555) | bioD/uvrB | dethiobiotin synthetase/exision nuclease of nucleotide excision repair, DNA damage recognition component |
| ? | NC_000913 | = 812997 | 110 (1.350) | intergenic (+50/‑529) | bioD/uvrB | dethiobiotin synthetase/exision nuclease of nucleotide excision repair, DNA damage recognition component | |||||
| * | ? | NC_000913 | 510338 = | 85 (0.940) | 3 (0.030) | 3/252 | NT | 3.5% | coding (1042/2505 nt) | copA | copper transporter |
| ? | NC_000913 | 510358 = | 82 (0.940) | coding (1022/2505 nt) | copA | copper transporter | |||||
| * | ? | NC_000913 | 284258 = | 93 (1.020) | 3 (0.030) | 3/250 | NT | 3.9% | coding (1058/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein |
| ? | NC_000913 | 284307 = | 60 (0.690) | coding (1107/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein | |||||