| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4260142 | 173 (2.200) | 4 (0.050) | 4/240 | NT | 2.3% | intergenic (‑139/‑179) | zur/yjbL | transcriptional repressor, Zn(II)‑binding/uncharacterized protein |
| ? | NC_000913 | = 4260147 | 179 (2.390) | intergenic (‑144/‑174) | zur/yjbL | transcriptional repressor, Zn(II)‑binding/uncharacterized protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCTTTTCCATCGGGCACCTCAAAGTGGGGGTTAAGAATGTCCTTACTTTACCATGTTCCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4259993‑4260142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatcGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTACGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATGGTAAAGTAAGGACATTCTTAACCCCCACTTTGAGGTGCCCGATG < NC_000913/4260147‑4260001 GTCTTTTCCATCGGGCACCTCAAAGTGGGGGTTAAGAGTGTCTTTACTTTACCATGTTCCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTAT < 5:122834/149‑1GTCTTTTCCATCGGGCACCTCAAAGTGGGGGTTAAGAATGTCCTTACTTTACCATGTTCCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTA < 7:348555/148‑1GTCTTTTCCATCGGGCACCTCAAAGTGGGGGTTAAGAATGTCCTTACTTTACCATGTTCCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTA > 8:313985/1‑148 TCTTTTCCATCGGGCACCTCAAAGTGGGGGTTAAGAATGTCCTTACTTTACCATGTTCCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTAT > 5:88500/1‑148 CCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATC > 7:85734/1‑92 CCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATC < 8:85734/92‑1 ACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATCGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACA > 5:335521/1‑130 ACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATCGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACA < 6:335521/130‑1 CGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATCGTGTTGATAATGGTA < 3:117915/75‑1 CGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATCGTGTTGATAATGGTA > 4:117915/1‑75 TATCGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTACGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATGGTAAAGTAAGGACATTCTTAACCCCCACTTTGAGGTGCCCGA > 6:88500/1‑149 TCGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTACGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATGGTAAAGTAAGGCCATTCTTAACCCCCACTTTGAGGGGCCCGATt > 6:164773/1‑148 TCGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTACGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATGGTAAAGTAAGGACATTCTTAACCCCCACTTTGAGGTGCCCGATG < 7:161441/149‑1 TCGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTAAGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATGGTAAAGTAAGGACATTCTTAACCCCCACTTTGAGGTGCCCGATG > 1:30662/1‑149 CGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTACGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATTGTAAATTAAGGACATTCTTAACCCCCACTTTGAGGTGCCCGATG < 8:89709/148‑1 GTCTTTTCCATCGGGCACCTCAAAGTGGGGGTTAAGAATGTCCTTACTTTACCATGTTCCAGGAAAAACACCGAGAACCCTTATTGTTGCCGTAATGTTGATTTTCTGTTTTGTAGGTAAGGTGTTATGTTGCCTTGTCGTACCATTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4259993‑4260142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatcGTGTTGATAATGGTACGACAAGGCAACATAACACCTTACCTACAAAACAGAAAATCAACATTACGGCAACAATAAGGGTTCTCGGTGTTTTTCCTGGAACATGGTAAAGTAAGGACATTCTTAACCCCCACTTTGAGGTGCCCGATG < NC_000913/4260147‑4260001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |