mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.3% | 234.7 / 226.2 | 246 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,941,891 | 0 | T | A | 23.1% | 65.4 / 21.7 | 39 | noncoding (84/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 3,941,892 | 0 | T | A | 23.1% | 69.1 / 23.0 | 39 | noncoding (85/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 3,949,208 | 0 | A | C | 21.4% | 400.9 / 127.6 | 207 | A254A (GCT→GCG) | yifB | magnesium chelatase family protein and putative transcriptional regulator |
| Marginal new junction evidence (lowest skew 10 of 228 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3548549 | 174 (0.870) | 28 (0.170) +23 bp |
19/252 | 14.8 | 16.3% | coding (1522/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
| ? | NC_000913 | 3548573 = | 166 (0.830) | coding (1498/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 21 (0.110) | 12/288 | 20.7 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 22 (0.120) | 10/280 | 21.6 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3870359 = | 239 (1.200) | 11 (0.060) | 10/284 | 21.8 | 4.6% | coding (983/1065 nt) | cbrA | colicin M resistance protein; FAD‑binding protein, putative oxidoreductase |
| ? | NC_000913 | 3870387 = | 230 (1.210) | coding (1011/1065 nt) | cbrA | colicin M resistance protein; FAD‑binding protein, putative oxidoreductase | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 11 (0.060) | 10/284 | 21.8 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4053529 | 193 (1.010) | 9 (0.050) | 9/284 | 22.5 | 4.5% | intergenic (+111/+118) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| ? | NC_000913 | = 4053613 | NA (NA) | noncoding (84/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 10 (0.050) | 9/290 | 22.9 | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 438164 = | 180 (0.900) | 13 (0.070) | 9/292 | 23.0 | 6.7% | intergenic (‑29/+151) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| ? | NC_000913 | 438263 = | 187 (0.960) | intergenic (‑128/+52) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring | |||||
| * | ? | NC_000913 | = 4457184 | 214 (1.070) | 9 (0.050) | 8/288 | 23.5 | 4.2% | intergenic (+26/+130) | mpl/yjgA | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein |
| ? | NC_000913 | = 4457224 | NA (NA) | noncoding (40/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3423376 = | 180 (0.900) | 22 (0.110) | 8/294 | 23.8 | 10.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213162 | 190 (0.960) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||