mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.4% | 115.3 / 48.8 | 74 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 184,253 | 0 | C | A | 21.2% | 206.9 / 16.9 | 85 | intergenic (‑158/+4) | yaeH/yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 108 (1.120) | 11 (0.120) | 11/252 | 7.9 | 8.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 134 (1.480) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 951207 = | 108 (1.120) | 10 (0.110) | 10/258 | 8.5 | 9.0% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| ? | NC_000913 | 951233 = | 100 (1.080) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 | |||||
| * | ? | NC_000913 | 4542682 = | 109 (1.130) | 9 (0.100) | 9/252 | 8.8 | 7.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 134 (1.480) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2700077 | 128 (1.320) | 6 (0.070) | 6/246 | 10.0 | 4.7% | intergenic (+154/+40) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein |
| ? | NC_000913 | = 2700087 | 127 (1.440) | intergenic (+164/+30) | yfhL/shoB | putative 4Fe‑4S cluster‑containing protein/toxic membrane protein | |||||
| * | ? | NC_000913 | = 2971145 | 99 (1.020) | 6 (0.060) | 6/258 | 10.4 | 6.0% | intergenic (+12/‑126) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| ? | NC_000913 | = 2971159 | 92 (1.000) | intergenic (+26/‑112) | ygdQ/ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein | |||||
| * | ? | NC_000913 | 639556 = | 110 (1.140) | 5 (0.050) | 5/258 | 10.9 | 4.8% | intergenic (+48/‑197) | ahpC/ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| ? | NC_000913 | 639588 = | 94 (1.020) | intergenic (+80/‑165) | ahpC/ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 762293 | 110 (1.140) | 5 (0.050) | 5/262 | 11.0 | 4.4% | coding (772/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | = 762324 | 113 (1.200) | coding (803/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 3067310 = | 117 (1.210) | 4 (0.040) | 4/250 | 11.3 | 3.7% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | NC_000913 | 3067334 = | 102 (1.140) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | NC_000913 | 3262180 = | 85 (0.880) | 4 (0.040) | 4/252 | 11.4 | 4.8% | coding (239/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| ? | NC_000913 | 3262220 = | 80 (0.890) | coding (199/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase | |||||
| * | ? | NC_000913 | 3769048 = | 103 (1.060) | 4 (0.040) | 4/256 | 11.5 | 3.6% | pseudogene (74/282 nt) | yibW | pseudogene, rhsA‑linked |
| ? | NC_000913 | 3769075 = | 114 (1.240) | pseudogene (101/282 nt) | yibW | pseudogene, rhsA‑linked | |||||