mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.7% | 143.5 / 78.4 | 101 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 53 (0.530) | 30 (0.340) | 27/248 | 3.7 | 35.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 60 (0.680) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 3943624 | NA (NA) | 8 (0.080) | 8/266 | 9.7 | 10.6% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037457 | 71 (0.710) | intergenic (+122/‑62) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 1474033 = | 95 (0.950) | 7 (0.080) | 7/260 | 10.0 | 7.2% | intergenic (+20/‑188) | ydbA/ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase |
| ? | NC_000913 | 1474063 = | 93 (1.010) | intergenic (+50/‑158) | ydbA/ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase | |||||
| * | ? | NC_000913 | = 781222 | 78 (0.780) | 7 (0.070) +ATGT |
7/272 | 10.4 | 7.3% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 781683 | 104 (1.040) | intergenic (+31/‑402) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | 1722616 = | 97 (0.970) | 6 (0.070) | 6/258 | 10.5 | 6.4% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 86 (0.940) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | NC_000913 | = 781222 | 78 (0.780) | 7 (0.070) +AT |
7/276 | 10.5 | 7.3% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 2521361 | 102 (1.020) | intergenic (+33/+232) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | = 3943624 | NA (NA) | 6 (0.060) | 6/266 | 10.7 | 10.8% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943642 | 52 (0.520) | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 3708382 = | 85 (0.850) | 6 (0.060) | 6/264 | 10.7 | 6.9% | intergenic (‑677/+234) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| ? | NC_000913 | 3708542 = | 83 (0.880) | intergenic (‑837/+74) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro | |||||
| * | ? | NC_000913 | 3708366 = | 87 (0.870) | 6 (0.060) | 6/264 | 10.7 | 7.0% | intergenic (‑661/+250) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| ? | NC_000913 | 3708390 = | 78 (0.830) | intergenic (‑685/+226) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 7 (0.070) | 6/266 | 10.7 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||