mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 41.0% | 29.4 / 40.5 | 40 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,095,453 | 0 | C | G | 20.8% | 55.5 / 10.1 | 24 | intergenic (‑16/‑52) | insE1/ymdE | IS3 transposase A/pseudogene |
| Marginal new junction evidence (lowest skew 10 of 102 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 23 (0.540) | 4 (0.150) +47 bp |
4/158 | 3.1 | 21.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 23 (0.540) | 4 (0.150) +47 bp |
4/158 | 3.1 | 24.6% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097062 = | 16 (0.380) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 2576080 | 31 (0.730) | 5 (0.150) | 5/200 | 3.4 | 17.7% | intergenic (‑275/+18) | eutS/maeB | putative ethanol utilization carboxysome structural protein/malic enzyme: putative oxidoreductase/phosphotransacetylase |
| ? | NC_000913 | = 2576054 | 22 (0.650) | intergenic (‑249/+44) | eutS/maeB | putative ethanol utilization carboxysome structural protein/malic enzyme: putative oxidoreductase/phosphotransacetylase | |||||
| * | ? | NC_000913 | 3783607 = | 65 (1.530) | 6 (0.150) | 6/236 | 3.5 | 9.2% | coding (55/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| ? | NC_000913 | 3783630 = | 58 (1.460) | coding (32/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) | |||||
| * | ? | NC_000913 | 3941880 = | 4 (0.090) | 7 (0.170) | 6/246 | 3.7 | 64.2% | noncoding (73/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4166756 = | NA (NA) | noncoding (98/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 3428690 | 3 (0.070) | 7 (0.170) | 6/246 | 3.7 | 70.5% | noncoding (73/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4166756 = | NA (NA) | noncoding (98/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 857987 = | 41 (0.970) | 6 (0.150) | 5/234 | 3.8 | 13.9% | coding (1075/1266 nt) | ybiU | DUF1479 family protein |
| ? | NC_000913 | 858025 = | 36 (0.910) | coding (1037/1266 nt) | ybiU | DUF1479 family protein | |||||
| * | ? | NC_000913 | = 4252622 | 63 (1.490) | 5 (0.120) | 5/240 | 3.9 | 8.4% | coding (117/498 nt) | ubiC | chorismate‑‑pyruvate lyase |
| ? | NC_000913 | = 4252634 | 49 (1.210) | coding (129/498 nt) | ubiC | chorismate‑‑pyruvate lyase | |||||
| * | ? | NC_000913 | = 3324753 | 72 (1.700) | 5 (0.120) | 5/240 | 3.9 | 7.1% | coding (159/849 nt) | folP | 7,8‑dihydropteroate synthase |
| ? | NC_000913 | = 3324767 | 62 (1.540) | coding (145/849 nt) | folP | 7,8‑dihydropteroate synthase | |||||
| * | ? | NC_000913 | = 2530994 | 29 (0.680) | 6 (0.150) | 5/240 | 3.9 | 18.3% | coding (240/987 nt) | zipA | FtsZ stabilizer |
| ? | NC_000913 | = 2531012 | 26 (0.640) | coding (222/987 nt) | zipA | FtsZ stabilizer | |||||