Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
13 4 9
15 4 8
17 4 8
4 13 27

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 91 357
Multiple Base Substitutions 1 1
Deletions 15 56
Insertions 5 12
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 112 426

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 326 0 227.2 7927370 97.0% 7689548 91.0
A0 F0 I1 R1 21 0 208.1 7270646 96.4% 7008902 90.8
A13 F20 I0 R1 25 0 31.0 673573 98.3% 662122 141.0
A13 F20 I1 R1 20 0 91.0 1948426 96.0% 1870488 140.3
A13 F63 I0 R1 33 0 52.5 1128482 95.6% 1078828 140.9
A13 F63 I1 R1 26 0 98.4 1985454 96.7% 1919934 148.0
A13 F121 I0 R1 44 0 32.4 695000 95.6% 664420 140.9
A13 F121 I0 R2 45 0 36.4 755504 98.8% 746437 141.0
A13 F121 I1 R1 26 0 90.8 2020014 95.1% 1921033 136.5
A13 F191 I0 R1 47 0 67.1 1456600 95.8% 1395422 140.0
A13 F191 I1 R1 33 0 115.0 2474462 95.7% 2368060 140.1
A15 F18 I0 R1 28 0 27.7 641476 95.5% 612609 139.9
A15 F18 I1 R1 24 0 187.9 4020594 97.0% 3899976 148.9
A15 F59 I0 R1 40 0 73.2 1560052 96.2% 1500770 140.9
A15 F59 I1 R1 27 0 48.1 927160 99.0% 917888 151.0
A15 F116 I0 R1 43 0 26.1 562224 95.1% 534675 140.9
A15 F116 I1 R1 36 0 38.0 765948 96.8% 741437 148.0
A15 F177 I0 R1 45 0 13.3 277528 98.6% 273642 140.9
A15 F177 I1 R1 36 0 127.3 2768580 95.1% 2632919 139.4
A17 F13 I0 R1 39 0 32.9 766976 96.1% 737063 140.9
A17 F13 I1 R1 22 0 106.8 2425184 96.5% 2340302 141.0
A17 F57 I0 R1 32 0 26.4 570066 95.2% 542702 140.9
A17 F57 I1 R1 26 0 171.0 3446910 96.3% 3319374 149.0
A17 F109 I0 R1 34 0 26.8 584098 95.0% 554893 139.9
A17 F109 I1 R1 30 0 33.4 644026 99.0% 637585 151.0
A17 F172 I0 R1 44 0 32.8 716278 95.2% 681896 139.9
A17 F172 I1 R1 29 0 114.8 2490228 95.6% 2380657 139.1

Mutation Needle Plot

Mutation Targets

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