Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
1 4 8
3 3 6
5 4 8
4 12 24

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 119 521
Multiple Base Substitutions 2 3
Deletions 17 41
Insertions 11 28
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 149 593

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 38 0 326.9 11315490 97.9% 11077864 91.0
A0 F0 I1 R1 9 0 335.3 11663380 97.5% 11371795 90.7
A1 F15 I0 R1 22 0 59.5 1335882 95.9% 1281110 140.0
A1 F15 I1 R1 10 0 32.9 697396 98.3% 685540 149.0
A1 F52 I0 R1 39 0 94.7 2129336 96.2% 2048421 141.0
A1 F52 I1 R1 27 0 78.9 1851050 96.3% 1782561 140.9
A1 F104 I0 R1 54 0 57.6 1336546 96.4% 1288430 141.0
A1 F104 I1 R1 35 0 102.1 2392160 96.4% 2306042 140.9
A1 F169 I0 R1 75 0 34.0 794130 95.7% 759982 140.9
A1 F169 I1 R1 62 0 44.4 970160 98.1% 951726 147.0
A3 F21 I0 R1 44 0 97.4 2221552 95.8% 2128246 141.0
A3 F21 I1 R1 10 0 111.7 2616522 94.1% 2462147 139.1
A3 F67 I0 R1 44 0 83.9 1894234 96.6% 1829830 141.0
A3 F67 I1 R1 15 0 88.5 1847830 95.4% 1762829 135.3
A3 F121 I0 R1 45 0 69.8 1582072 96.2% 1521953 141.0
A3 F121 I1 R1 14 0 130.3 2998436 96.1% 2881496 139.8
A5 F18 I0 R1 32 0 69.1 1533550 96.6% 1481409 141.0
A5 F18 I1 R1 9 0 56.1 1205542 96.5% 1163348 148.9
A5 F58 I0 R1 46 0 56.2 1222162 96.0% 1173275 141.0
A5 F58 I1 R1 20 0 133.9 3041128 64.0% 1946321 150.5
A5 F109 I0 R1 76 0 110.5 2404748 96.5% 2320581 141.0
A5 F109 I1 R1 31 0 90.0 1985866 95.2% 1890544 140.9
A5 F178 I0 R1 41 0 49.4 1100758 95.6% 1052324 140.0
A5 F178 I1 R1 28 0 89.4 2015306 95.8% 1930663 139.9

Mutation Needle Plot

Mutation Targets

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