Notes

Publication:

10.1128/AEM.00410-17

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
4 1 4
5 1 5
6 1 4
4 4 14

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 12 51
Multiple Base Substitutions 0 0
Deletions 9 40
Insertions 2 7
Mobile Element Insertions 3 6
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 26 104

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4 1 422.4 11956043 98.9% 11824526 164.0
A4 F165 I0 R1 30 2 145.4 2767925 88.6% 2452381 274.6
A4 F165 I0 R2 21 5 47.6 874664 89.5% 782824 285.9
A4 F165 I1 R1 12 4 46.9 945993 77.1% 729360 300.4
A4 F165 I2 R1 15 4 31.0 597148 80.7% 481898 300.4
A5 F160 I0 R1 19 3 129.7 2402282 96.4% 2315799 257.1
A5 F160 I0 R2 29 17 150.5 2348141 97.3% 2284741 286.9
A5 F160 I1 R1 10 5 46.4 900383 80.1% 721206 300.4
A5 F160 I2 R1 9 4 39.2 755565 80.7% 609740 300.4
A5 F160 I3 R1 10 5 41.1 839420 76.2% 639638 300.4
A6 F162 I0 R1 34 5 116.6 1912093 97.7% 1868114 280.7
A6 F162 I0 R2 33 31 113.3 1830329 95.4% 1746133 285.0
A6 F162 I1 R1 10 3 42.1 785471 83.4% 655082 300.4
A6 F162 I2 R1 11 4 58.9 1188075 77.1% 916005 300.4

Mutation Needle Plot

Mutation Targets

Entries to show