Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
1 2 2
4 1 1
5 2 2
6 1 1
7 1 1
9 3 3
10 4 4
11 3 4
12 3 3
14 1 1
17 1 1
18 1 1
20 2 2
21 1 1
22 1 1
24 4 6
25 5 5
26 1 1
27 3 3
28 2 2
29 4 6
22 47 53

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 64 287
Multiple Base Substitutions 0 0
Deletions 20 219
Insertions 4 106
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 88 612

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6 0 216.9 10518806 96.4% 10140128 99.1
A0 F0 I1 R1 6 0 216.9 10518806 96.4% 10140128 99.1
A1 F28 I1 R1 0 0 0.0 18 11.1% 1 121.6
A1 F58 I1 R1 15 0 107.1 3879374 93.9% 3642732 136.9
A4 F33 I1 R1 14 0 143.2 5224154 94.5% 4936825 135.2
A5 F58 I1 R1 15 0 148.7 5512372 93.2% 5137530 134.8
A5 F101 I1 R1 14 0 63.0 2220034 95.9% 2129012 138.6
A6 F31 I1 R1 10 0 82.6 3311778 93.8% 3106447 127.0
A7 F32 I1 R1 10 0 193.3 7961148 92.7% 7379984 123.0
A9 F8 I1 R1 10 0 44.9 1572256 95.0% 1493643 140.3
A9 F18 I1 R1 13 0 92.5 3218186 94.4% 3037967 142.0
A9 F30 I1 R1 14 0 59.8 2103408 94.9% 1996134 139.9
A10 F8 I1 R1 11 0 80.4 2811030 94.9% 2667667 140.9
A10 F12 I1 R1 11 0 39.9 1385802 94.4% 1308197 142.1
A10 F18 I1 R1 10 0 23.8 823134 93.3% 767984 144.2
A10 F30 I1 R1 11 0 56.4 1967102 94.8% 1864812 141.7
A11 F8 I1 R1 10 0 27.1 954304 93.6% 893228 142.3
A11 F12 I1 R1 10 0 29.6 1033382 93.9% 970345 142.0
A11 F12 I1 R1 10 0 29.6 1033382 93.9% 970345 142.0
A11 F18 I1 R1 12 0 68.8 2420248 94.3% 2282293 140.5
A12 F11 I2 R1 8 0 61.9 2155136 94.9% 2045224 141.2
A12 F16 I1 R1 12 0 55.6 1940552 94.2% 1827999 141.9
A12 F27 I1 R1 12 0 40.7 1434418 94.1% 1349787 140.6
A14 F17 I2 R1 8 0 46.5 1608648 93.4% 1502477 144.2
A17 F19 I2 R1 7 0 75.1 2620304 94.1% 2465706 141.7
A18 F50 I3 R1 11 0 169.3 6438670 93.8% 6039472 130.8
A20 F14 I2 R1 7 0 37.7 1441862 93.8% 1352466 140.4
A20 F47 I0 R1 38 0 50.2 2011660 90.9% 1828598 145.9
A21 F11 I1 R1 10 0 165.3 6857246 91.7% 6288094 127.3
A22 F131 I1 R1 14 0 129.4 4845390 94.3% 4569202 134.9
A24 F8 I1 R1 11 0 105.1 3785700 93.7% 3547200 138.0
A24 F8 I1 R1 11 0 105.1 3785700 93.7% 3547200 138.0
A24 F19 I1 R1 14 0 154.2 5491824 93.5% 5134855 140.0
A24 F19 I1 R1 14 0 154.2 5491824 93.5% 5134855 140.0
A24 F54 I1 R1 14 0 100.6 3839678 93.5% 3590098 132.2
A24 F90 I1 R1 14 0 112.3 4006928 93.9% 3762505 139.9
A25 F8 I1 R1 11 0 121.4 4355752 94.1% 4098762 138.0
A25 F20 I1 R1 14 0 116.3 4171026 94.1% 3924935 138.3
A25 F51 I1 R1 13 0 105.2 3742036 95.3% 3566160 137.6
A25 F92 I1 R1 15 0 96.9 3674738 94.7% 3479976 130.7
A25 F105 I1 R2 13 0 75.2 2949918 95.2% 2808321 145.7
A26 F25 I1 R1 10 0 16.5 652220 92.6% 603955 126.6
A27 F13 I2 R1 14 0 183.1 6452050 95.1% 6135899 138.7
A27 F72 I1 R1 15 0 116.2 4009876 94.0% 3769283 143.3
A27 F106 I1 R1 14 0 112.4 4022312 93.2% 3748794 139.7
A28 F15 I2 R1 12 0 69.5 2634030 94.2% 2481256 144.7
A28 F89 I1 R1 14 0 153.8 5793302 93.0% 5387770 133.2
A29 F9 I1 R1 11 0 132.4 5171998 94.0% 4861678 127.3
A29 F9 I1 R1 11 0 132.4 5171998 94.0% 4861678 127.3
A29 F23 I1 R1 13 0 200.3 7748512 93.2% 7221613 129.7
A29 F23 I1 R1 13 0 200.3 7748512 93.2% 7221613 129.7
A29 F59 I1 R1 12 0 17.6 644544 92.2% 594269 137.0
A29 F91 I1 R1 15 0 142.0 5464946 92.4% 5049610 131.6

Mutation Needle Plot

Mutation Targets

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