Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1124550 110660 SNP T→A
USA300HOU_RS00515
putative lipoprotein I173I (ATT→ATA)
1124595 9710 SNP T→C
gyrA, nnrD
DNA gyrase subunit A/ADP-dependent (S)-NAD(P)H-hydrate dehydratase intergenic (+15/+72)
1124611 2372413 SNP C→G
USA300TCH1516_02262, pbuG
hypothetical protein/Guanine/hypoxanthine permease PbuG intergenic (+164/+28)
1124630 1744362 SNP G→A
apt
Adenine phosphoribosyltransferase H104Y (CAC→TAC)
1124647 9716 SNP T→C
gyrA, nnrD
DNA gyrase subunit A/ADP-dependent (S)-NAD(P)H-hydrate dehydratase intergenic (+21/+66)
1124648 9719 SNP G→A
gyrA, nnrD
DNA gyrase subunit A/ADP-dependent (S)-NAD(P)H-hydrate dehydratase intergenic (+24/+63)
1124709 803539 SNP A→G
USA300HOU_RS03920, dtpT
Putative lipid kinase/Di-/tripeptide transporter intergenic (‑239/+31)
1124867 2372419 SNP C→T
USA300TCH1516_02262, pbuG
hypothetical protein/Guanine/hypoxanthine permease PbuG intergenic (+170/+22)
1126452 76969 SNP G→A
USA300HOU_RS00140, USA300HOU_RS00350
hypothetical protein/Monoacylglycerol lipase intergenic (+509/‑107)
1126456 195286 SNP T→A
USA300HOU_RS00900, USA300HOU_RS00905
hypothetical protein/hypothetical protein intergenic (‑97/‑82)
1126458 396540 SNP G→A
efeM
putative iron uptake system component EfeM A208T (GCA→ACA)
1126461 607884 SNP G→A
dck
Deoxyadenosine/deoxycytidine kinase R209* (CGA→TGA)
1126462 629681 SNP C→A
USA300HOU_RS02990
3-hexulose-6-phosphate synthase L84I (CTA→ATA)
1126463 665392 SNP T→G
paiA_1
Spermidine/spermine N(1)-acetyltransferase L79* (TTA→TGA)
1126464 707910 SNP A→G
znuC_1, ideR
High-affinity zinc uptake system ATP-binding protein ZnuC/Iron-dependent repressor IdeR intergenic (‑1/‑121)
1126472 1233504 SNP T→A
prkC
Serine/threonine-protein kinase PrkC V470D (GTT→GAT)
1126475 1440085 SNP G→T
cspA_2, USA300TCH1516_01338
Cold shock protein CspA/hypothetical protein intergenic (‑45/+126)
1126479 1761889 SNP C→A
fpgS
Folylpolyglutamate synthase D388Y (GAT→TAT)
1126484 1963768 SNP C→G
hemY
Protoporphyrinogen oxidase V365L (GTA→CTA)
1126491 2352815 SNP G→A
rpsI
30S ribosomal protein S9 A92V (GCA→GTA)
1126492 2454626 SNP A→T
lyrA
Lysostaphin resistance protein A L48L (CTA→CTT)
1126831 1744476 SNP C→G
apt
Adenine phosphoribosyltransferase V66L (GTA→CTA)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details