Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9240GT40.8% 373.9 / 101.1 394intergenic (+308/+150)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (54/164);  new base T (127/23);  total (207/187)
Fisher's exact test for biased strand distribution p-value = 2.29e-31
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 399 total aligned reads displayed.

TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203798‑204051
                                                                                                                                          |                                                                                                                                  
        ttAAATCCATTTGTAAAAAAGCCTATGTTCTTGGCTTTTTATTTTAATTTTCAACATTACAACGGTTTCAAATTGTATTTTTTAGG‑GTTGTT‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑tt                                                                                                                            <  2:3133992/128‑1 (MQ=255)
           aataaaTTTTTAAAAAAGCATATGTTATAGTCTTTTTATTATATTTTTAAACATTAAAAAGTTTTAAAATTGTATTTTTTAGGTTTTT‑‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGa                                                                                                                        <  1:3910845/123‑1 (MQ=255)
                aTTTTTAAAAAATCCTATTTTATTGGTTTTTTTTTAAAATTATAAAAAATACAACTGTTTAAAATTGTATTTTTTTGG‑GTTGTTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑a                                                                                                                    <  2:1988890/128‑1 (MQ=255)
                aTTTTTAAAAAATCCTATGTTCTAGGCTTTTTATTATAAATAACAAAATTACAACGCTTTAAAAGTGTATTTTTTATG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AAcc                                                                                                                 <  1:3213563/128‑1 (MQ=255)
                 tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGAAC‑aa                                                                                                                   >  1:2998601/1‑128 (MQ=255)
                  ttGTAAAAAATCATTTTTTTTAGGTTTTTTTTTATTATTTTTAAAATTAAAAAGTTTTTAAATTTTTTTTTTTTGG‑GTTGTTTT‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑aa                                                                                                                   <  1:990393/128‑1 (MQ=255)
                     tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATTAAAGTAATA‑TTTGGATA‑AACCa                                                                                                                >  1:567855/1‑128 (MQ=255)
                      aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTT‑‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAAGTAAAA‑TTTGGAAC‑AAACaaaa                                                                                                             >  1:2085273/1‑128 (MQ=255)
                        aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGAAA‑AACCaaa                                                                                                              >  1:3073351/1‑128 (MQ=255)
                        aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAATT‑TTTGGATA‑AAACaaaa                                                                                                             >  1:502540/1‑128 (MQ=255)
                        aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGATC‑AAACAAAAc                                                                                                            >  1:2329740/1‑128 (MQ=255)
                         aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑TAAAATAAAAGTAATA‑TTTGGTTA‑AACAaaaaa                                                                                                            >  1:885397/1‑127 (MQ=255)
                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑TAAAATAAAAGTTATT‑TTTGGATC‑AACCaaaaatta                                                                                                         >  2:3037107/1‑124 (MQ=255)
                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGTTC‑AACCaaaaaatt                                                                                                         >  1:3670742/1‑124 (MQ=255)
                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAATTTAATA‑TTTGGATA‑AAACAAAAGtata                                                                                                        >  1:3440702/1‑128 (MQ=255)
                               tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAAATAATA‑TTTTCATC‑AACAAAAAATATA‑TCa                                                                                                    >  2:3742997/1‑128 (MQ=255)
                                 tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAATAAAA‑TTTTGATC‑AACAAAAAAAATA‑ACaaa                                                                                                  >  2:3863129/1‑128 (MQ=255)
                                   ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATTAAATTAACA‑TTTGGATG‑AAACAAAAATATA‑TAataaa                                                                                                >  2:603892/1‑128 (MQ=255)
                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTT‑‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAAGA‑ATTGTTAA‑AACAAAAACTTAA‑AAAAAAAAAt                                                                                             >  2:3547124/1‑128 (MQ=255)
                                      tAGGGTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGT‑‑‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑ATAAAAAAAATAAATA‑TTTGGTAA‑AACCAAAAATATA‑TAAAAAAAAtaa                                                                                           >  1:1171384/1‑126 (MQ=255)
                                      tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑TAAAATAAAATTATAT‑TTTTGTTC‑AACCAAAATAATA‑TAaaaaaat                                                                                              >  1:2421145/1‑127 (MQ=255)
                                      tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAAATAATT‑TTTTGATA‑AAACAAAAATATA‑AAAAAAAAAt                                                                                             >  2:1044045/1‑128 (MQ=255)
                                      tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTT‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAATTAAAT‑TTTGGATG‑AACAAAAACTATA‑Taaaaaaaaat                                                                                            >  2:3400056/1‑126 (MQ=255)
                                                 ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAATTAATT‑TTTGTATA‑AAAAAAATATATT‑taaaaaaaattaaaaaaaat                                                                                   >  1:2955698/1‑128 (MQ=255)
                                                 ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAAATATTA‑ATTGGTTA‑ACCCAAAACTTTA‑TAAATAAAATTaaaaaaaaa                                                                                   >  1:3341268/1‑127 (MQ=255)
                                                   ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATATATTTAATA‑TTTGGTTA‑AAGAAAAAAGAAA‑TAAAAAAAATTaaaaaaataa                                                                                  >  2:3574955/1‑125 (MQ=255)
                                                   ataCTTATCAACATTACAACGCTATCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAAATAAAA‑TTTTTATC‑AAAAAAAAAATAA‑AAAAAAAAATTAAAAAAAAtag                                                                                 >  2:3052758/1‑128 (MQ=255)
                                                    ttattATCAACATTAAAAATCTTTAAAAGTTTATTTTTTATG‑TTTGT‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAAtagttta                                                                             <  2:3080491/125‑1 (MQ=255)
                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAATA‑TTTTGAAA‑AACCAAAAAAATA‑AAAAAAAAATTaaaaaaaaaattt                                                                               >  2:3325722/1‑123 (MQ=255)
                                                     tattATCAACATTTCAATGCTTTATAAGTGTATTTTTTTGG‑TGTGGTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAAtagttt                                                                              <  1:3230901/126‑1 (MQ=255)
                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTATG‑‑TTTTTAAG‑AAACAAAAAAATATTTAAATAATTTAAAAAAAAtagtt                                                                               >  2:2419292/1‑128 (MQ=255)
                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTACG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAATTAAAA‑TTTTTTAC‑AACAAAAAAAATT‑AAAAAAAAATTAAAAAAAAtatt                                                                                >  1:1252482/1‑126 (MQ=255)
                                                      cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAAGAAATA‑TTTTGATA‑AACAAAAACTATA‑TAAAAAAAATTAAAAAAAAtatttt                                                                              >  1:140790/1‑128 (MQ=255)
                                                       ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTTTTA‑AAAAAAAAAAATAAGT‑TTTTGAAC‑AAAAAAAAATATA‑AAAAAAAAATTAAAAAAAAtatttta                                                                             >  1:3117792/1‑128 (MQ=255)
                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATTAAATTAATA‑TTTTTTAA‑AAACAAAAATATT‑TAAAAAATATTAAAAAAAAtatttta                                                                             >  1:1658775/1‑128 (MQ=255)
                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAATA‑TTTGGATA‑AACAAAAAATATA‑TAAAAAAAATTAAAAAAAAtttttta                                                                             >  1:1114721/1‑128 (MQ=255)
                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTTTTA‑AAAAAAAAAATTAATT‑TTTGTATCAAACAAAAAATATA‑T‑AAAAATATTaaaaaaaaattttttt                                                                            >  1:192839/1‑120 (MQ=255)
                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑TAAAATAAAATTAATA‑TTTTGATA‑AAACAAAAATTTA‑AAAAAAAAATTAAAAAAAAaattttatttt                                                                         >  1:948636/1‑127 (MQ=255)
                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAAAT‑TTTGGGTG‑ACCACAAACAATT‑ACAAAAAAATTAAAAAATAAATTTTATTTg                                                                         >  2:1545623/1‑128 (MQ=255)
                                                           cAACATTACAACGCTATCAAAGTGTATTTTTTAGG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTTTTTA‑‑AAAAAAAAAAATAAGT‑TTTGGAAA‑AAACAAACCTAAA‑AAAAAAAAATTAAAAAAAAAATTTTTTTTGa                                                                        >  1:852184/1‑128 (MQ=255)
                                                               aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGT‑‑‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAAGTAATA‑TTTGGATC‑AACCAAAACTATA‑TAAAAAAAATTAAAAAAAATAGTTTATTTGAgataca                                                                  >  1:3604555/1‑123 (MQ=255)
                                                                  aCAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAAATAAAT‑TTTGGAAA‑AACCAAAAAAATT‑AAAAAAAAATAAAAAAAAAtatttttttttgtgtta                                                                   >  1:4026119/1‑117 (MQ=255)
                                                                   cAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAATTAAAA‑TTTTGAT‑‑AAACAAAAAAATATTAAAAAAAATTAAAAAAAAaattttatttttatttaa                                                                  >  1:285758/1‑120 (MQ=255)
                                                                   cAACGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAAAA‑TTTTTAAA‑AACAAAAAATATA‑AAAAAAAAATTAAAAAAAATAATTTATTTTATTTTaaa                                                                 >  1:1005737/1‑128 (MQ=255)
                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTTTTTTTTTTTTTTTTTTTAT‑‑‑‑‑AAAAAAAAAAATAATA‑TTTGGTAA‑AAACAAAAAATTA‑AAAAAAAAATTAAAAAAAATATTTTATTTTAATTTaaa                                                                 >  1:172537/1‑128 (MQ=255)
                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAATA‑TTTTTTTA‑AACCAAAAAAATA‑TAAAAAAAATTAAAAAAAAtagtttattttatttaaaaa                                                                >  1:419712/1‑118 (MQ=255)
                                                                       gCTTTCAAAGTGTATTTTTTAGG‑ATTGTTT‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAATTAATA‑TTTGGATA‑AACAAAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTAGTTTAttttactataag                                                            >  1:2708540/1‑120 (MQ=255)
                                                                             aaaGTGTATTTTTTAGG‑CTTGTT‑‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑TAAAATAAATTTAATA‑TTTTGAAA‑CAACAAAAAAATA‑TAAAATAAATAAAAAAAAAATTTTTTGTTTAGTTTaaaaatataaaatat                                                     >  2:2595140/1‑117 (MQ=255)
                                                                              aaGTGTATTTTTTAGG‑CTTGTT‑‑‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTAAAA‑TTTGGATC‑AACCAAAAATATA‑TAAAAAAAATTAAAAAAAAATATTTATTTTATTTTAAAAACTTCAtatata                                                    >  2:3603006/1‑128 (MQ=255)
                                                                                 tgtATTTTTTAGG‑CTTGTTTTT‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAAAAAAAATTATATTTTTTAAC‑ACCAAAAAAAAAA‑TAAAAAAAATTAAAAAAAATTTTTTAGTTTAGTTACAAAAATACatatat                                                     >  2:1861672/1‑128 (MQ=255)
                                                                                   tATTTTTTAGG‑CTTGTTTT‑‑TTTTTTTTTTTTTTTTTT‑‑‑‑‑AAAAATAAAATTATAT‑TTTTTTAA‑AACAAAAAAAATT‑AAAAAAAAATTAAAAAAAAAATTTTATTTGTTTTTAAAATATTCATAAataata                                                 >  2:3520488/1‑128 (MQ=255)
                                                                                     ttttttAGG‑CTTGTTT‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAAAAAAAGAAAAA‑TTTGGTTA‑AAACAAAGCTATT‑TCAAAAAAATTTAAAAAAAAATTTTATTTAGGTTTTAAATTGGCattattattaaaa                                              >  2:1190120/1‑117 (MQ=255)
                                                                                                 ttttttttttttttttttttttttGT‑‑‑‑‑ATAAATAAAATTAAGA‑TTTGGATA‑AAAAAAAATTATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                      <  1:132103/120‑1 (MQ=255)
                                                                                                 ttttttttttttttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AAACAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                      <  1:439784/120‑1 (MQ=255)
                                                                                                  tttttttttttttttttttttttGT‑‑‑‑‑AATAATAAAAGTAAGA‑TTTGGATC‑AACAAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                     <  1:3538067/121‑1 (MQ=255)
                                                                                                  ttgttttttttttttttttttttGT‑‑‑‑‑AAAAATAAAATTAAAG‑TTTGGTTC‑AACCAAAACTATA‑TCAAAAAAATT‑AAAAAAATATTTTAGTTGATTTTAAAAAAATAATATATATTACAAATAAATTTAt                                    >  1:3090984/8‑128 (MQ=255)
                                                                                                    tttttttttttttttttttttGT‑‑‑‑‑AATAATAAAAGTAAGT‑TTTGGATC‑AAACAATAATATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                   <  1:3035926/123‑1 (MQ=255)
                                                                                                     tttttttttttttttttttttt‑‑‑‑‑AAAAAAAAAATTAAAT‑TTTGGTTA‑AAACAAAAATTTT‑TTAAAAAAATTAAAAAAAATATTTTTTTTTATTTTCAAATCTGAATAAATAATAAAAAAGAATTTAtta                                  >  1:310870/5‑126 (MQ=255)
                                                                                                       tttttttttttttttttttt‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGATC‑AACCAAAACTATA‑TAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCTTCATTTATAGTACAAATGAATTTataata                                >  1:3165978/3‑128 (MQ=255)
                                                                                                       tttttttttttttttttttt‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TAAAAAAAATTAAAAAAAATAGTTTTTTTGAGTTTAAAATATGCATATATTTTAAAAAGGAATTTATGATa                                >  1:219682/3‑128 (MQ=255)
                                                                                                       ttttttttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AAAAAAAACTATA‑TCAAAAAAATT‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                               <  1:3322673/126‑1 (MQ=255)
                                                                                                        ttttttttttttttttttt‑‑‑‑‑AAAAATAAAATTAATT‑TTTTGATA‑AAACAAAAATATA‑TTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                               <  1:2016001/127‑1 (MQ=255)
                                                                                                        ttttttttttttttttttt‑‑‑‑‑AAAAATAAAAGTAATA‑TTTGGATA‑AACCAAAAATATA‑TAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAATATATATTAAAAATGAATTTATtatat                               >  1:1496130/2‑127 (MQ=255)
                                                                                                          ttttttttttttttttT‑‑‑‑‑AAAATTAATAGTAATA‑TTTTTATA‑AAATAAATTTATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGaa                             <  2:2356045/128‑1 (MQ=255)
                                                                                                          tttttttttttttttGT‑‑‑‑‑AATAATAAATGTAAGA‑TTTGGATT‑AATAAAAAATATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  2:1641911/128‑1 (MQ=255)
                                                                                                          tttttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  2:877844/128‑1 (MQ=255)
                                                                                                          tttttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGAGC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  1:3757724/128‑1 (MQ=255)
                                                                                                            tttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AAATATAACTATA‑TCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaa                           <  1:3581275/128‑1 (MQ=255)
                                                                                                             ttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGTATC‑AAACAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  2:3018700/128‑1 (MQ=255)
                                                                                                             ttttttttttttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑ATCCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGTAATTTATGATAGaaaaa                          <  1:1521930/128‑1 (MQ=255)
                                                                                                               tttttttttttt‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGTTC‑ACCCAAAAATATA‑AAAAAAAAATTAAAAAAAATAGTTTATTTGATTTTCAAAAATGAATATTTTGTACAAAGGAATTTATGTTTTaaaaaaa                        >  2:3802962/1‑128 (MQ=255)
                                                                                                               ttttttttttGT‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGATC‑TAAAAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                        <  1:3976717/128‑1 (MQ=255)
                                                                                                                    tttttGT‑‑‑‑‑AAAAATAATAGTAAGA‑TTTGGATC‑AATCAAAACTATA‑TCAAATAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                   <  1:3945013/128‑1 (MQ=255)
                                                                                                                     tttttt‑‑‑‑‑AAAAATTAATTTAAGA‑TTTGGATC‑TAATTATATTTTA‑TTAAATAAATTAAAAAATATATTTTAGTTTAGTTTCATATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                  <  2:774756/128‑1 (MQ=255)
                                                                                                                     ttttGT‑‑‑‑‑ATAATTAAAAGTAAGA‑TTTTGATA‑AACTAAAACTATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                  <  1:1600502/128‑1 (MQ=255)
                                                                                                                     ttttGT‑‑‑‑‑AATATTAATAGTAAGA‑TTTGGATT‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                  <  1:3283124/128‑1 (MQ=255)
                                                                                                                      tttGT‑‑‑‑‑AAAAATAATAGTTAGA‑TTTGTATC‑ATACAAAACTATA‑TTAAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                 <  2:1345174/128‑1 (MQ=255)
                                                                                                                      tttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                 <  2:3212616/128‑1 (MQ=255)
                                                                                                                       ttGT‑‑‑‑‑AAATATAAAATTAATA‑TTTGGATA‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                <  2:2096180/128‑2 (MQ=255)
                                                                                                                       ttGT‑‑‑‑‑AAAATTAAAAGTAATA‑TTTGGATC‑AACCAAAACTATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  2:965412/128‑1 (MQ=255)
                                                                                                                       ttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                <  2:3288415/128‑2 (MQ=255)
                                                                                                                       ttGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                <  2:3698330/128‑2 (MQ=255)
                                                                                                                        ttt‑‑‑‑‑AAAAATAATTTTAAGT‑TTTGGATA‑ATTATTAAATATA‑TCAATATATTTAAAAAAAATAGTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt               <  2:2963361/126‑1 (MQ=255)
                                                                                                                        ttt‑‑‑‑‑AAAAATAAAAGTTATA‑TTTTGATA‑AAAAAAAAATATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTAAAAAGGAATTTATGATAGAAAATAATGGATTatc               <  2:1286792/126‑3 (MQ=255)
                                                                                                                         gT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt              <  1:3479256/128‑1 (MQ=255)
                                                                                                                          t‑‑‑‑‑AAAAATTAAAGTAATT‑TTTGTATA‑TTATATAAATATA‑TATAAATAATTAAATAAATTAGTTTAGTTGTGTTTCAAATCTTAATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg             <  2:2722945/128‑1 (MQ=255)
                                                                                                                                 aaaataaaatTAAGA‑TTTGGATA‑AAATAAATCTATA‑TCAATAAAATTAAAAATATTAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact           <  1:2524714/128‑7 (MQ=255)
                                                                                                                                 aaaaTTATAGTAAGA‑TTTTTATC‑ATACAAATATATA‑TCAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt           <  2:1958902/128‑1 (MQ=255)
                                                                                                                                     tAATAGTATGA‑TTTTGATC‑AAACAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  1:3841837/128‑1 (MQ=255)
                                                                                                                                     tAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       >  2:3923338/1‑128 (MQ=255)
                                                                                                                                     tAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGGTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       >  2:677478/1‑128 (MQ=255)
                                                                                                                                      aaatGTTAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  2:3906098/128‑1 (MQ=255)
                                                                                                                                      aaaaGTAAGA‑TTTTGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:3411422/128‑1 (MQ=255)
                                                                                                                                      aaaaGTAAGA‑TTTGGATC‑AACCAAAAATATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:2132441/128‑1 (MQ=255)
                                                                                                                                       aaaGTAAGT‑TTTGGATC‑AAGCAAAAATATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     <  2:419712/128‑1 (MQ=255)
                                                                                                                                       aaaGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAATTTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     >  1:3710519/1‑128 (MQ=255)
                                                                                                                                       aaaGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     >  2:2177444/1‑128 (MQ=255)
                                                                                                                                       aaaGTAAGA‑TTTGGATC‑AAACAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     <  1:476330/128‑1 (MQ=255)
                                                                                                                                        aaGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  2:475700/128‑1 (MQ=255)
                                                                                                                                        aaGTAAGA‑TTTGGATA‑AATTAAAAATATA‑TAAAAAAAAATAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  2:1417485/128‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                  
TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑CTTG‑‑‑‑‑‑TTTTTTTTTTTTTTTTGT‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATC‑AACCAAAACTATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203798‑204051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑