Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT52.6% 66.5 / 265.7 286intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (29/106);  new base T (150/0);  total (180/106)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.29e-01

Only 100 of 315 total aligned reads displayed.

ATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203791‑204039
                                                                                                                                         |                                                                                                                                        
     attttttATTTTAAAGCCATTTTTAAAAAAGACTATTTTATATGCTTTTTATTATAATTATAAAAATTAAAACGATTTAAAAGTTTATTTTTTAGG‑‑CTT‑‑TTT‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATaa                                                                                                                           <  1:1004014/126‑1 (MQ=255)
       tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTAGTTTTTTGG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑TTaaaaaaaata                                                                                                                       >  2:675094/1‑126 (MQ=255)
                  aataaaTTTTTAAAAAAGCATATGTTATAGTCTTTTTATTATATTTTTAAACATTAAAAAGTTTTAAAATTGTATTTTTTAGGT‑T‑‑‑‑TTT‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGa                                                                                                            <  1:3910845/123‑1 (MQ=255)
                  aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTg                                                                                                              >  1:2413818/1‑128 (MQ=255)
                  aaGCCATTTGTAAAAAAGCATATGTGTTAGGATTTTTTTTATAATTATCAACATTACAACGCTTTAAAATTGTATTTTTTAGG‑‑C‑‑‑‑TTGTT‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTgg                                                                                                             <  1:3105055/128‑1 (MQ=255)
                       aTTTTTAAAAAATCCTATTTTATTGGTTTTTTTTTAAAATTATAAAAAATACAACTGTTTAAAATTGTATTTTTTTGG‑‑G‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCa                                                                                                         <  2:1988890/128‑1 (MQ=255)
                       aTTTTTAAAAAATCCTATGTTCTAGGCTTTTTATTATAAATAACAAAATTACAACGCTTTAAAAGTGTATTTTTTATG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAc‑c                                                                                                     <  1:3213563/128‑1 (MQ=255)
                         ttGTAAAAAATCATTTTTTTTAGGTTTTTTTTTATTATTTTTAAAATTAAAAAGTTTTTAAATTTTTTTTTTTTGG‑‑G‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCaa                                                                                                        <  1:990393/128‑1 (MQ=255)
                            tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATTAAAGTAATA‑TTTGGATAAAC‑Ca                                                                                                    >  1:567855/1‑128 (MQ=255)
                              aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGTAAAAC‑Caaa                                                                                                  >  2:3058366/1‑128 (MQ=255)
                               aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGAAAAAC‑Caaa                                                                                                  >  1:3073351/1‑128 (MQ=255)
                               aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAATT‑TTTGGATAAAA‑Caaaa                                                                                                 >  1:502540/1‑128 (MQ=255)
                               aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAAGA‑TTTTGATCAAC‑Aaaaa                                                                                                 >  1:3593433/1‑128 (MQ=255)
                               aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGATCAAA‑CAAAAc                                                                                                >  1:2329740/1‑128 (MQ=255)
                                 aaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑ATAAATAAAATTAAGA‑TTTGGAGAAAA‑Caaaaat                                                                                               >  1:3744641/1‑126 (MQ=255)
                                   gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTTGATCAAC‑Aaaaaaatt                                                                                             >  1:1181626/1‑124 (MQ=255)
                                     cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAATTATGA‑TTTGGATCAAA‑Caaaaaaatt                                                                                            >  1:208574/1‑123 (MQ=255)
                                      tatttttatttcTTTTTATTATAATTATCTACATTAAAACTCTTTAAAATTTTATTTTTTATG‑‑CT‑‑‑TTT‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCaaa                                                                                      <  1:3435433/117‑1 (MQ=255)
                                      tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCATAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTT‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAATA‑TTAGGATCAAA‑CAAAAC‑‑ATATaaaa                                                                                      >  1:1955982/1‑128 (MQ=255)
                                          ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTTTTTATTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTGGAGAAAA‑CAAACAT‑ATATAaaaa                                                                                     >  1:2761579/1‑128 (MQ=255)
                                          ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTAAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATTAAATTAACA‑TTTGGATGAAA‑CAAAAAT‑ATATAataaa                                                                                    >  2:603892/1‑128 (MQ=255)
                                          acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGT‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTTAGA‑TTTGGATAAAC‑CAAAACT‑ATTTaaaaaaaa                                                                                  >  2:3781500/4‑128 (MQ=255)
                                            cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATAAAA‑CACTACT‑TTA‑Caaaaat                                                                                   >  1:3611821/1‑127 (MQ=255)
                                            cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTT‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAATATATA‑TTTGGAACAAC‑CAAAAAT‑ATAAAAAAAAAAt                                                                                 >  2:3213707/1‑128 (MQ=255)
                                             tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAATTAAAATTAAAA‑TTTTGATCCAC‑CAAAACT‑ATATCAAAAAAAt                                                                                 >  2:3652200/1‑128 (MQ=255)
                                             tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAATAATT‑TTTTGATAAAA‑CAAAAAT‑ATAAAAAAAAAAt                                                                                 >  2:1044045/1‑128 (MQ=255)
                                              aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTTGATAAAA‑CAAAAAT‑ATATAaaaaaa                                                                                   >  1:1078609/1‑128 (MQ=255)
                                                  tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTAATTTTTAGG‑‑C‑‑‑‑TTGTT‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTTGTAAAAC‑CAAAAAT‑ATAAAAAAAAAATTaaaaa                                                                           >  2:444323/1‑128 (MQ=255)
                                                   ttttttttTAATTTTCATTATTAAAAAGTTTTCAATGTTTTTTTTTTTGGATT‑‑‑‑TTT‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTaaaaaa                                                                          <  2:270716/128‑1 (MQ=255)
                                                      tattatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAATAAAATTAATA‑TTTTTATAAAA‑AAAAAAT‑ATtaaaaaaaaataaaaaaaaa                                                                        >  2:132103/1‑128 (MQ=255)
                                                        ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAATT‑TTTGTATAAAA‑AAAATAT‑ATTtaaaaaaaattaaaaaaaat                                                                       >  1:2955698/1‑128 (MQ=255)
                                                           taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAAAA‑TTTAGAACAAA‑CAAAAATAataaaaaaaaaataaaaaaaaaatt                                                                     >  2:1896349/1‑125 (MQ=255)
                                                           taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAAGTAATA‑TTTGTATAAAC‑AAAAAAT‑AAAAAATAAAAAATaaaaaaaaaatt                                                                    >  2:313936/1‑124 (MQ=255)
                                                            tattATCAACATTTCAATGCTTTATAAGTGTATTTTTTTGG‑‑T‑‑‑‑GTGGTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAAtagttt                                                                  <  1:3230901/126‑1 (MQ=255)
                                                            aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAAAA‑TTTGTATCAAC‑CAAAAAT‑ATATAAAAAAAATTAAAAAAAAtatttt                                                                  >  1:2152613/1‑128 (MQ=255)
                                                            aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTACG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTTTTTTA‑AAAAAAAAAATTAAAA‑TTTTTTACAAC‑AAAAAAA‑ATTAAAAAAAAATTAAAAAAAAtatt                                                                    >  1:1252482/1‑126 (MQ=255)
                                                             cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAGAAATA‑TTTTGATAAAC‑AAAAACT‑ATATAAAAAAAATTAAAAAAAAtatttt                                                                  >  1:140790/1‑128 (MQ=255)
                                                              ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATAAATA‑TTTGGTTCAAA‑CAAAAAA‑ATTTAAAAAAAATTAAAAAAAAtaattaa                                                                 >  1:2518970/1‑126 (MQ=255)
                                                              attataaaaTTACAACGTTTTAAAATTGTTTTTTTTAGG‑‑T‑‑‑‑TTGT‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGA‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAAtagtttagtt                                                              <  2:3436884/120‑1 (MQ=255)
                                                               tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATTAAATTAATA‑TTTTTTAAAAA‑CAAAAAT‑ATTTAAAAAATATTAAAAAAAAtatttta                                                                 >  1:1658775/1‑128 (MQ=255)
                                                               tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAAGTAATA‑TTTGGAACAAC‑CAAAACT‑ATAAAAAAAAAATTAAAAAAAAtatttttgt                                                               >  2:3378500/1‑128 (MQ=255)
                                                               tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTTTTTTTAAAAAATAAAATAAAGA‑TTTGGATAAAA‑AAAAAAT‑AATTAAAAAAAATTAAAAAAAAaaattt                                                                  >  1:1919504/1‑128 (MQ=255)
                                                               tATCAACATTACAACACTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAAAATTTTTGAAAAAC‑AAAAAAT‑ATAAAAAAAAAATTAAAAAAAAtatttat                                                                 >  1:2205294/1‑126 (MQ=255)
                                                                attaaaaTTACAATGTTTTTAAATTGTATTTTTTAGG‑‑CTT‑‑TTT‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                                             <  1:3025031/122‑1 (MQ=255)
                                                                aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAATA‑TTTTTTAAAAC‑AAAAAAT‑TTTAAAAAAAAATTAAAAAAAAttttttttt                                                               >  1:774756/1‑120 (MQ=255)
                                                                  cAACTTTACAAAGCTTTCACAGTGTGTTTTTTAGG‑‑CTGTTTTT‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                                             <  1:3044493/128‑1 (MQ=255)
                                                                  cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTTTATAAAC‑AAAAAAT‑ATTTAAAAAAAATTAAAAAAAAtattttatttt                                                             >  1:2890993/1‑127 (MQ=255)
                                                                  cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTTGGAAAAC‑CAAAAATAATATAAAAAAAAATaaaaaataatttatgttt                                                              >  2:1282279/1‑116 (MQ=255)
                                                                     cATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAATAAAATTTATA‑TTTGTTAAAAA‑CAAAAAT‑TTATAAAAAAAATAAAAAAAAAtatttttatttatt                                                          >  2:3841837/1‑120 (MQ=255)
                                                                     cATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAAAT‑TTTTGATAAAC‑CAAAAAT‑ATAAAAAAAAAATTAAAAAAAAaatttttttttatt                                                          >  2:877708/1‑120 (MQ=255)
                                                                      aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTTAAT‑TTTGTATAAACAAAAAAAT‑ATATAATAAAATTAAAAAAAAAtattatagttattt                                                          >  1:958083/1‑124 (MQ=255)
                                                                      aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAATAATA‑TTTTGAAAAAC‑CAAAAAA‑ATATAAAAAAAATTAAAAAAAAtaatttattttttttt                                                        >  1:2056861/1‑122 (MQ=255)
                                                                       ttACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAATAAGA‑TTTTG‑TAAACACAAAAAA‑ATATAAAAAAAATAAAAAAAAAAAATTTTGTATAGtt                                                         >  2:2292288/1‑128 (MQ=255)
                                                                         aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAATAAAT‑TTTGGAAAAAC‑CAAAAAA‑ATTAAAAAAAAATAAAAAAAAAtatttttttttgtgtta                                                       >  1:4026119/1‑117 (MQ=255)
                                                                         aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAAAA‑TTTTTAAAAAA‑CAAAAAA‑ATAAAAAAAAAATTAAAAAAAAtattttatttaatattaa                                                      >  2:1521930/1‑120 (MQ=255)
                                                                         aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAAGA‑TTTTGTTAAAC‑AAAAAAT‑ATATAAAAAAAAATAAAAAAAAAATTTTATTTTATTTTaaa                                                     >  1:3530481/1‑128 (MQ=255)
                                                                         aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATTAAAGTAAGA‑TTTTGTTAAAA‑CAAAACA‑ATATAAAAAAAAATAAAAAAAAAATTTTATTTTAGTTTCaa                                                     >  2:3542388/1‑128 (MQ=255)
                                                                            aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑‑TTTTTTTTTTTAT‑‑‑‑‑‑AAAAAAAAAAATAATA‑TTTGGTAAAAA‑CAAAAAA‑TTAAAAAAAAAATTAAAAAAAATATTTTATTTTAATTTaaa                                                     >  1:172537/1‑128 (MQ=255)
                                                                            aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTTTTTAAAC‑CAAAAAA‑ATATAAAAAAAATTAAAAAAAAtagtttattttatttaaaaa                                                    >  1:419712/1‑118 (MQ=255)
                                                                            aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTTT‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAATAAAA‑TTTGGTTCAAC‑CAAAAAT‑TTAAAAAAAAAATTAAAAAAAATATTTTATTTTAGGTTCaaa                                                    >  1:1153118/1‑128 (MQ=255)
                                                                              gCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAATTAATA‑TTTGTGTCTCC‑CAAAACT‑ATTTAAAAAAAATATAAAAAAAAAATTTATTTGTTTTTAAAAtatt                                                >  1:877440/1‑125 (MQ=255)
                                                                               cTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAATTAATT‑TTTTGAAAACC‑CAAAAAT‑AATAAAAAAAAATTAAAAAAAAAATTTTATTTGTTTTAAAAATCtt                                                >  2:3108460/1‑127 (MQ=255)
                                                                                 ttCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTT‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTAAGA‑ATTTGTACAAC‑CAAAACT‑ATTTCAAAAAAATTAAAAAAAATTTTTTTGTTGTGTTTAAAAACTGAata                                            >  2:2108838/1‑128 (MQ=255)
                                                                                 ttCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTGT‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAGTAAGA‑TTTGGATCAAC‑CAAAACA‑ATATCAAAAAAATAAAAAAAAATATTTTATTTTAGTTTAAAATcgaaatat                                           >  1:3374356/1‑121 (MQ=255)
                                                                                    aaaGTGTATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAATTAAA‑TTTTTAAAAAA‑CAAAAAA‑AAAAAAAAAAAATTTAAAAAAATATTTTTTTTGAATTTaaaaaaataataa                                           >  2:3880508/1‑119 (MQ=255)
                                                                                       gtgtATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAAAAAAATAATT‑TTTGGTACAAA‑AAAAACT‑ATAAAAAAAAAATTAAAAAAAATATTTTATTTTTGATTAAAATATGAAaatata                                        >  2:3731127/1‑128 (MQ=255)
                                                                                          tATTTTTTAGG‑‑C‑‑‑‑TTGTTTT‑‑TTTTT‑‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAATAAAATTATAT‑TTTTTTAAAAC‑AAAAAAA‑ATTAAAAAAAAATTAAAAAAAAAATTTTATTTGTTTTTAAAATATTCATAAataata                                     >  2:3520488/1‑128 (MQ=255)
                                                                                            ttttttAGG‑‑C‑‑‑‑TTGTTT‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAAAAAAGAAAAA‑TTTGGTTAAAA‑CAAAGCT‑ATTTCAAAAAAATTTAAAAAAAAATTTTATTTAGGTTTTAAATTGGCattattattaaaa                                  >  2:1190120/1‑117 (MQ=255)
                                                                                                             ttttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑ATAAATAAAATTAAGA‑TTTGGATAAAA‑AAAAATT‑ATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:132103/120‑1 (MQ=255)
                                                                                                             ttttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:3829388/120‑1 (MQ=255)
                                                                                                             ttttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:3114713/120‑1 (MQ=255)
                                                                                                             ttttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAA‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:439784/120‑1 (MQ=255)
                                                                                                             ttttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAA‑CAAAAAT‑ATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:479079/120‑1 (MQ=255)
                                                                                                              tttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATTAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:3308179/121‑1 (MQ=255)
                                                                                                              ttgttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAATTAAAG‑TTTGGTTCAAC‑CAAAACT‑ATATCAAAAAAATT‑AAAAAAATATTTTAGTTGATTTTAAAAAAATAATATATATTACAAATAAATTTAt                        >  1:3090984/8‑128 (MQ=255)
                                                                                                               ttttttttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATTATAGTATGA‑TTTGGATCAAA‑CATAATT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:2571035/122‑1 (MQ=255)
                                                                                                               ttgtttttttt‑‑‑‑ttttttttttttt‑‑‑‑‑‑AAAAATAAAATTAAGT‑TTTGGATAAAC‑AAAAAAT‑ATAAAAAAAAAATTAAAAAAAATATTTTAGTTGTGTTTAAAATCTTAATTTATATTAAAAATGAAttttt                        >  2:3035926/7‑126 (MQ=255)
                                                                                                                   ttttttt‑‑‑‑ttttttttttttt‑‑‑‑‑‑AAAAATAAAATTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCTTCATTTATAGTACAAATGAATTTataata                    >  1:3165978/3‑128 (MQ=255)
                                                                                                                    tttttt‑‑‑‑ttttttttttttt‑‑‑‑‑‑AAAAATAAAAGTAATA‑TTTGGATAAAC‑CAAAAAT‑ATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGAATATATATTAAAAATGAATTTATtatat                   >  1:1496130/2‑127 (MQ=255)
                                                                                                                    tttttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑AAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  1:3130787/127‑1 (MQ=255)
                                                                                                                      tttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AATAATAAATGTAAGA‑TTTGGATTAAT‑AAAAAAT‑ATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:1641911/128‑1 (MQ=255)
                                                                                                                      tttt‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:3443985/128‑1 (MQ=255)
                                                                                                                         t‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAATATAAAAGTAAGA‑TTTGGATCAAC‑CAAAAAT‑ATATCAAAAAATTTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGaaaaa              <  2:3593433/128‑1 (MQ=255)
                                                                                                                         t‑‑‑‑tttttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGTATCAAA‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:3018700/128‑1 (MQ=255)
                                                                                                                                tttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt           <  1:1545623/128‑1 (MQ=255)
                                                                                                                                 ttttttttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTTGATCAAC‑TAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  2:3918707/128‑1 (MQ=255)
                                                                                                                                    tttttGT‑‑‑‑‑‑AAAAATAATAGTAAGA‑TTTGGATCAAT‑CAAAACT‑ATATCAAATAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  1:3945013/128‑1 (MQ=255)
                                                                                                                                     tttttt‑‑‑‑‑‑AAAAATTAATTTAAGA‑TTTGGATCTAA‑TTATATT‑TTATTAAATAAATTAAAAAATATATTTTAGTTTAGTTTCATATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  2:774756/128‑1 (MQ=255)
                                                                                                                                     ttttGT‑‑‑‑‑‑ATAATTAAAAGTAAGA‑TTTTGATAAAC‑TAAAACT‑ATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  1:1600502/128‑1 (MQ=255)
                                                                                                                                     ttttGT‑‑‑‑‑‑AATATTAATAGTAAGA‑TTTGGATTAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  1:3283124/128‑1 (MQ=255)
                                                                                                                                      ttttT‑‑‑‑‑‑AAATATATAAGTTAGA‑TTTTTATAAAT‑AAAAAAT‑TTATTAAAAATATTATTAAATATAGTTTATTTGAGTTTCAAATATTAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:2357214/128‑1 (MQ=255)
                                                                                                                                      ttttT‑‑‑‑‑‑AAAAATATAAGTAATT‑TTTTGATCAAA‑ATAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  1:911956/128‑1 (MQ=255)
                                                                                                                                      tttGT‑‑‑‑‑‑TTAATTAAAAGTAAGT‑TTTGGATATAT‑TAATACT‑ATATCAAAAAATTTAAAAATTATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:1565802/128‑1 (MQ=255)
                                                                                                                                      tttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAA‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:3044783/128‑1 (MQ=255)
                                                                                                                                      tttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATAAAA‑CAAAAAT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  1:3325722/128‑1 (MQ=255)
                                                                                                                                       ttGT‑‑‑‑‑‑ATAAATAATAGTAATA‑TTTGGATGAAC‑CAAAACT‑ATATCAAAATATTTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  2:3555052/128‑2 (MQ=255)
                                                                                                                                       ttGT‑‑‑‑‑‑AATAATAAAAGTAAGA‑TTTGGATCAAC‑AAAAACT‑ATATCATAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:3690079/128‑1 (MQ=255)
                                                                                                                                       ttGT‑‑‑‑‑‑AAAATTAAAAGTAATA‑TTTGGATCAAC‑CAAAACT‑ATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:965412/128‑1 (MQ=255)
                                                                                                                                       ttGT‑‑‑‑‑‑AAAAATATAAGTAAGA‑TTTGGATAATA‑AAAAACT‑ATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:3955705/128‑2 (MQ=255)
                                                                                                                                       ttGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:3303846/128‑2 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑‑TTG‑‑‑‑‑‑TTTTT‑‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAATAAAAGTAAGA‑TTTGGATCAAC‑CAAAACT‑ATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203791‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑