Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA36.2% 1566.8 / 193.4 1132intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (301/385);  new base A (286/103);  total (603/529)
Fisher's exact test for biased strand distribution p-value = 3.06e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1142 total aligned reads displayed.

CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203812‑204064
                                                                                                                                                    |                                                                                                                               
  aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑‑TT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTATATAAACCa                                                                                                                            >  1:2269599/1‑128 (MQ=255)
       tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTTAGA‑TTTTGATGAAcaca                                                                                                                           >  1:768899/1‑125 (MQ=255)
        aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTATTTT‑‑‑TTTTTTTTTTT‑‑‑TAAAAT‑AAAAGTAATT‑TTTTGATctcaaaa                                                                                                                           >  1:4592957/1‑122 (MQ=255)
         aaaatagcTATTTTGTTGGCTTTTAATTATATTTAACAACATTAAAACGCTTTCAAATTTTTTTTTTTAGGGTTT‑‑‑TTT‑‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCaaaa                                                                                                                         <  2:688326/121‑1 (MQ=255)
              gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGTAAAACAAAAAAtata                                                                                                                    >  1:3812078/1‑128 (MQ=255)
              gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAATTATAA‑TTTGGATAAACCaaaaattaa                                                                                                                    >  1:1993531/1‑123 (MQ=255)
                 tATTTTCAATGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTTTAGG‑‑‑C‑‑‑TTGTT‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCaa                                                                                                                <  1:6193888/128‑1 (MQ=255)
                 tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATGAACCAAAACTatataa                                                                                                                 >  1:1897152/1‑126 (MQ=255)
                  attttttattttttttATTATAATTATAAAAATTAAAAATCTTTAAAATTTTTTTTTTTATGAT‑T‑‑‑TTT‑‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCaaa                                                                                                               <  1:6675037/117‑1 (MQ=255)
                    gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTTTTAAAAAAA‑AAAATTATTT‑TTTGGTTCAACAAAAATTTTATAaaaa                                                                                                              >  1:2140683/1‑128 (MQ=255)
                     ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTAATA‑TTTTTATAAAACAAAAAAATTTaaaaaa                                                                                                             >  1:6354352/1‑128 (MQ=255)
                     ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTAAAA‑TTTTTATAAACCAAAAAAATATaaaaaa                                                                                                             >  2:6699984/1‑128 (MQ=255)
                      catAGGCTTTTTATTATACTTATCAACATTACAACGCTGTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTTTTTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑TAAATTATAA‑TTTGGCTCAAACAAAAAtataaaaata                                                                                                              >  1:4368938/3‑122 (MQ=255)
                        tAGGCTTTTTATTATACTTATCAACATAACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑TTT‑‑‑‑TTTTTTATTTTTTTTTTT‑‑‑AATAAT‑AAAAGAAATA‑TTTTAATAAAACAAAAATATATAAAAAAAAt                                                                                                          >  2:30792/1‑128 (MQ=255)
                          tttttttttttATAATTATAAAAATTTAAACGCTTTTAAATTGTTTTTTTTTGG‑‑‑CTTTTTT‑‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTa                                                                                                        <  2:1068555/125‑1 (MQ=255)
                             ttttttATATAATTATAAAAATTAAAATTGTTTCATATTGTATTTTTTTGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                     <  1:5190651/128‑1 (MQ=255)
                               tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTAATA‑TTTTTATCAAACAAAAATAATAAAAAAAAATTaaaaaa                                                                                                   >  1:952983/1‑128 (MQ=255)
                               tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGT‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AATAAA‑TAAATTAATA‑TTTTATACAACAAAAACATTATAAAAAAAATTataaaaaa                                                                                                 >  2:4428763/1‑128 (MQ=255)
                               tttATTATACTTATCAACATTACAACGCTATCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAAATTATA‑TTTGGATAAACCAAAAAAAAAAAAAAAAAATTtaaaaa                                                                                                   >  1:3611598/1‑128 (MQ=255)
                                ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTTTTTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAAATAAAA‑TTTTGATAAAAAAAAAATATATAAAAAAAAATtaaaa                                                                                                    >  1:4718736/1‑128 (MQ=255)
                                ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAAATAAAA‑TTAGGAAAAAACAAAACTATATAaaaaaaaaaaaaaaaa                                                                                                  >  2:5312916/1‑128 (MQ=255)
                                ttattaTAATTATATAAATTACAACTCTTTTAAATTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaa                                                                                                  <  1:5426061/128‑1 (MQ=255)
                                      taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTTTTTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAA‑AAAAATAAGA‑TTTTGTTATACAAAAACAATATAAAAAAATTTaaaaaataatt                                                                                              >  1:4250260/1‑123 (MQ=255)
                                         ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTT‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAATTAATA‑TTTGGAACACAAAAAAATATAACAAAAAAATTAAAAAAAAaatttta                                                                                          >  2:1698058/1‑128 (MQ=255)
                                            aaaaaaTTAAAATGTTTTAAAATTGTATTTTTTTTG‑‑‑A‑‑‑GTGTT‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGa                                                                                     <  2:5089605/123‑1 (MQ=255)
                                             cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTT‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAATTAAGA‑TTTTTATCAACCAAAAATATATAAAAAAAATTAAAAAAAAtattatagtta                                                                                      >  1:6109657/1‑127 (MQ=255)
                                                 aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAATTAAAA‑TTTTTATCAAACAAAAATAATTAAAAATAATTAAAAAAAATATTTTAGTTTAtttt                                                                                 >  1:5007412/1‑128 (MQ=255)
                                                  ttACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑TAAATTAAGA‑TTTGGTAAAACCACAACTATTTAAAAAAAATAAAAAAAAATAGTTTATATGAGTTTc                                                                                >  1:510355/1‑128 (MQ=255)
                                                    aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTT‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTAATA‑TTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATTGTTTTTTAGAGtttaa                                                                               >  1:6016263/1‑126 (MQ=255)
                                                     cAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGT‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAA‑AAAATTAATA‑TTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAAAATTTTAGTTTAATTTaaaaaa                                                                           >  1:702084/1‑126 (MQ=255)
                                                      aaCGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTT‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑TAAAAT‑AAAAATAAAATTTTGGTAAAACAAAAAATTTAAAAAAAAAATTAAAAAAAAAATTTTTGTTGAGTTACatat                                                                            >  2:5838634/1‑128 (MQ=255)
                                                       aCGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTT‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAAGTAATA‑TTTTGTTAACACAAAACAATATAAAAAAAATTTAAAAAAATATTTTAGTTTTGTTTAAAAt                                                                            >  2:3817852/1‑128 (MQ=255)
                                                       aCGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTAATA‑TTTGGATCAACCAAAACTTTATAAAAAAAATTAAAAAAAAAATTTTATTTAATTTTAAAAta                                                                           >  1:5262960/1‑127 (MQ=255)
                                                            ttCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑TAAAAA‑AAAATTAAAA‑TTTTGATAAAACAAAAAAAATTAAAAAAAAATAAAAAAAATATTTTTTTTGTATTTTAAAtaatcat                                                                      >  1:2798103/1‑122 (MQ=255)
                                                            ttCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAATTAAGA‑TTTGGATAAAACAAAAATATTTAAAAAAAATTAAAAAAAATAGTTTATTTTATTTTAAAATAAGCat                                                                      >  1:171021/1‑128 (MQ=255)
                                                            ttCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑‑‑T‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTTAGTTTAAAATCTGCAtatata                                                                 >  1:1160542/1‑128 (MQ=255)
                                                             tCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTTT‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAATTAATA‑TTTTGAAAAACCAAAAAAAAAAAAAAAAAATTAAAAAAAAAATTTTTTTTAATTTTCatatattata                                                                      >  2:2600833/1‑122 (MQ=255)
                                                             tCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAATTAAGT‑TTTTGTGCAACCAAAAATATATAAAAAAAATTAAAAAAAATTGTTTTTTTGATTTTaaaaaagggata                                                                     >  2:6563061/1‑120 (MQ=255)
                                                                  gtgtATTTTTTAGG‑‑‑C‑‑‑TTGTTT‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAA‑AAAAAAAAGA‑TTTGGTTAAACCAAAAATATAAAAAAAAAATAAAAAAAAATAATTTAATTTAGTTACAAATATGAataaaaat                                                                >  1:3979354/1‑123 (MQ=255)
                                                                     tATTTTTTAGG‑‑‑C‑‑‑TTGTT‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAATAAAAATTAATA‑TTTGTATAACACAAAAATAATAAAAAAAAATAAAAAAAAATATTTTATTTTATTTAAAAATCTAAAAATATATTaa                                                             >  2:2488252/1‑127 (MQ=255)
                                                                       ttttttAGG‑‑‑C‑‑‑TTGTT‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTTT‑‑‑AAAAAT‑AAAAGTAAAA‑TTTGTCACCACCAAAAATATAACAAAAAAAATAAAAAAAATATTTTAGTTGAGTTACAAATTTACataatattaaaaaa                                                          >  2:5221556/1‑117 (MQ=255)
                                                                                      tttttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                                    <  1:6280458/119‑1 (MQ=255)
                                                                                       ttttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:483609/120‑1 (MQ=255)
                                                                                       ttttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATAAACTAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:1994506/120‑1 (MQ=255)
                                                                                       gtttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:5560429/120‑1 (MQ=255)
                                                                                        tttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AATAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:1776897/121‑1 (MQ=255)
                                                                                        tttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAATTT‑AATAGTAATT‑TTTGTTTAAATTTAAATTATATAATTTTTATTATAATAAATAGTTTAGTTTAGTTTAAAATATGAATATTTAGTACATAGTAATTTa                                                  <  2:4014678/121‑1 (MQ=255)
                                                                                         ttttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATAAACTAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:26705/122‑1 (MQ=255)
                                                                                         tgttttttt‑‑‑‑tttt‑‑‑ttttttattGT‑‑‑AAATAT‑AATAGTAAGA‑ATTGGATCTAATAAATCTTTATCATAAATTTTTATAAAAATAGTTTAGTTGATTTTAAAATCTTCATATATAGTTCAAAGGAAttatt                                                 <  2:3523512/122‑4 (MQ=255)
                                                                                          tttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                                <  2:6460318/123‑1 (MQ=255)
                                                                                          gttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTTGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                                <  2:2261327/123‑1 (MQ=255)
                                                                                          gttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAA‑AAAATTAATT‑TTTTGATAAACCAAAAATATATAAAAAAAAATAAAAAAAATATTTTATTTGAGTTTAAAATTTTAAAATATATTAAAAAAGAATTTAtt                                                >  1:5512430/6‑127 (MQ=255)
                                                                                           ttttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                               <  2:468151/124‑1 (MQ=255)
                                                                                             ttttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AATAGTAAGA‑TTTGTATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATa                                             <  1:2547460/126‑1 (MQ=255)
                                                                                              tttt‑‑‑‑tttt‑‑‑ttttttttttt‑‑‑AAAAAT‑AAAAGTAAGT‑TTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTGTGTTTCAAATATTCATATTTATTAAAAAGGAATTTaatatta                                            >  1:1012791/2‑122 (MQ=255)
                                                                                              tttt‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AATAGTAAGA‑TTTGGATCAACATAAATTATATCTTAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                            <  1:3499179/127‑1 (MQ=255)
                                                                                               ttt‑‑‑‑tttt‑‑‑ttttttttttt‑‑‑AAAAAT‑AAAAATAATA‑TTTGGATAAACCAAAAATATAAAAAAAAAATTAAAAAAAAAAGTTTTTTTTATTTTAAAATAATCATATATAATAAAAATGAATTTAtaaaaaa                                           >  2:6351212/1‑122 (MQ=255)
                                                                                                 t‑‑‑‑tttt‑‑‑tttttttttGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  2:5378696/128‑1 (MQ=255)
                                                                                                               tttttttGT‑‑‑AAAAAT‑AAAATTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                  <  2:6066998/128‑1 (MQ=255)
                                                                                                                    tttt‑‑‑AAAAAT‑TATAGTAAGA‑TTTGGATCATTAATAAATATATGATAATATTTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATATATGATAGAAAAAAATGGATTAg                             <  2:2935286/125‑1 (MQ=255)
                                                                                                                    ttGT‑‑‑AAATAT‑AAAAGTAAGA‑TTTGGATCAACCAATAATATATTATAATAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:6494989/128‑2 (MQ=255)
                                                                                                                     ttt‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGTATAAAACAAAAATATATCAAAAAAATTAAAAAAAATTGTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatc                            <  2:6772373/126‑3 (MQ=255)
                                                                                                                       t‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                          <  1:5350107/128‑5 (MQ=255)
                                                                                                                       t‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg                          <  1:5707474/128‑1 (MQ=255)
                                                                                                                       t‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg                          <  2:2342785/128‑1 (MQ=255)
                                                                                                                              att‑AAAAGTAAGA‑TTAGGATCAACCAAAACTATATTAAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                      <  2:5739561/126‑1 (MQ=255)
                                                                                                                                t‑AATAGTAATA‑TTTGGATCTACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:3389755/128‑1 (MQ=255)
                                                                                                                                t‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:5469848/128‑1 (MQ=255)
                                                                                                                                t‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    >  1:3097307/1‑128 (MQ=255)
                                                                                                                                 ttataGTAAGA‑TTTGGATCAATCTATACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:6185127/124‑1 (MQ=255)
                                                                                                                                  taaaGTAAGA‑TTTTGATAAATCAATAATATATTAAATATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:5936683/127‑1 (MQ=255)
                                                                                                                                  aaaaGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:5168876/128‑1 (MQ=255)
                                                                                                                                  aaaaGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   >  2:1605139/1‑128 (MQ=255)
                                                                                                                                   ttatttata‑TTTTGATTAAAAAAAAATTTATAAAAAAAATTAAAAAAAATATTTTATTTGATTTTAAAATTTGCATATATTTTACAAATGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:1573004/120‑1 (MQ=255)
                                                                                                                                   aaaGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  >  1:2348717/1‑128 (MQ=255)
                                                                                                                                     attAAGA‑TTTGGATTATACAAAAATATTTTAAAATAATTATAAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt                <  1:1525745/126‑1 (MQ=255)
                                                                                                                                      gTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  2:1808677/1‑128 (MQ=255)
                                                                                                                                      gTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  1:3277786/1‑128 (MQ=255)
                                                                                                                                      gTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  2:6129001/1‑128 (MQ=255)
                                                                                                                                      gTAAGA‑TTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               <  2:826416/128‑1 (MQ=255)
                                                                                                                                        aaGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATTATCCAttttt             >  1:2982271/1‑128 (MQ=255)
                                                                                                                                        aaGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGATTCACGTCTGCATAGATAGAACAAAGCAATTTATGAAAGAAAAAAATGGATTTGTTGATAATCCagattt             >  2:564160/1‑123 (MQ=255)
                                                                                                                                         aGA‑TTTGGATCAACCAAAACTATATCAATAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGATAAAAATGGATTAGTTGATAATCCAtttatt            >  2:1477980/1‑128 (MQ=255)
                                                                                                                                         aGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAATAGGATTAGTAGATAATCCAtttttt            >  1:4903439/1‑128 (MQ=255)
                                                                                                                                         aGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:4131765/1‑128 (MQ=255)
                                                                                                                                         aGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATACAAAAAAAAGGATAAGTTGATAATCAAtttttt            >  2:2125213/1‑128 (MQ=255)
                                                                                                                                          gA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCAATTTTTTa           >  1:2462245/1‑128 (MQ=255)
                                                                                                                                           a‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     >  1:6586180/1‑117 (MQ=255)
                                                                                                                                           a‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttttta          >  2:1256603/1‑126 (MQ=255)
                                                                                                                                           a‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:6791499/1‑128 (MQ=255)
                                                                                                                                            atatGGATCAACCAAAACTATATCAAAAAAATAAAAAAAAATAGTTTAGTTGAGTTTCACAACTCCATATAGAGTACAAAAGAATTTAAGATAGAATAAAATCGATTAGTTGATAATACaataattaa          >  2:3354612/4‑120 (MQ=255)
                                                                                                                                             tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         >  2:364712/1‑128 (MQ=255)
                                                                                                                                              ttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        >  1:5835115/1‑128 (MQ=255)
                                                                                                                                              ttGGATAAACCAAAAATATATCAAATAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        <  2:421980/128‑1 (MQ=255)
                                                                                                                                               tGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  2:2796449/1‑128 (MQ=255)
                                                                                                                                                ggATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt      <  2:5961790/128‑1 (MQ=255)
                                                                                                                                                ggATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAAGGATTAGTAGAGAATCCATTTTTTAAtttt      >  1:1392048/1‑128 (MQ=255)
                                                                                                                                                 gATCAATAAAAAATATATGAAAAAAATTATAAAATATAGTTTAGTTGAGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     <  1:845280/128‑1 (MQ=255)
                                                                                                                                                   tCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     <  1:5579534/110‑1 (MQ=255)
                                                                                                                                                    cAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt  >  1:5758690/1‑128 (MQ=255)
                                                                                                                                                    |                                                                                                                               
CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑TTG‑‑‑‑‑TTT‑‑‑‑TTTT‑‑‑TTTTTTTTTGT‑‑‑AAAAAT‑AAAAGTAAGA‑TTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203812‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑