BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,924	0	G	T	32.0%	1318.6 / 154.7	981	intergenic (+308/+150)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (174/449); new base T (259/34); total (498/483)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 994 total aligned reads displayed.

TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203798‑204051

     aaTTTAAAACAATTTTTAAAAAATACAATTTTATATTTTTTTTATTATAATTATTAACATTAAAACGCTTTAAAATTTTATTTTTTTCT‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTaa                                                                                                                                 <  2:6808830/127‑1 (MQ=255)

              cattttGTAAAAAAGCATTTTTTCTTGTTTTTTTTTTTTATTTATAAAAATTAAACCGTTTTTAATGTTTTTTTTTTTGGGTTT‑‑‑‑TTT‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGAt                                                                                                                        <  2:274741/125‑1 (MQ=255)

                  ttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAT‑GTAATAtttttttaaac                                                                                                                    >  1:1146584/1‑120 (MQ=255)

                    gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑TAAAAT‑AAAA‑TTAATTTTTGGAGAAACC‑a                                                                                                                 >  2:4191095/1‑128 (MQ=255)

                    gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑TAAA‑GTAATATTTGGaaacacaaa                                                                                                                 >  2:4889038/1‑120 (MQ=255)

                     ttaaaaaGCCTATTTTATAGGCTTTTTATTATAATTATAAAAATTACAACGCTTTAAAATTGTTTTTTTTTGG‑‑‑CGTGTTTT‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑a                                                                                                                 <  1:5574763/126‑1 (MQ=255)

                      aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑TAAAAA‑AAAA‑GTAAGATTTTGATTAAAC‑aaa                                                                                                               >  1:6792262/1‑128 (MQ=255)

                       aaaaaTCCTTTTTTTTATGCTTTTTTTTATAATTATAAAAATTACAACGCTTTCAAATTGTTTTTTTTATG‑‑‑G‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑aaaa                                                                                                              <  1:5130833/128‑1 (MQ=255)

                       aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACt                                                                                                            >  1:5330748/1‑128 (MQ=255)

                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑ATAAGATTTGGTTCACCC‑AAAACTatat                                                                                                        >  2:5664423/1‑128 (MQ=255)

                                agaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATATTTGTATAAAAC‑AAAAatatttaa                                                                                                      >  1:4928856/7‑124 (MQ=255)

                                 tGTTTTATGTTTTTTTTTATTCTTATAAACATAAATACGTTTTTAAAGTTTATTTTTTAGG‑‑‑G‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑Caaa                                                                                                   <  2:6632119/128‑1 (MQ=255)

                                   ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑TAAAAT‑AAAA‑GTAAGATTTGGATAAACC‑AAAAATTTAT‑Caaaaaa                                                                                                >  2:73850/1‑128 (MQ=255)

                                   ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGGGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAA‑AAAA‑GTAATATTTTGATAAACA‑AAAAATATAT‑Caaaa                                                                                                  >  1:2505388/1‑128 (MQ=255)

                                    catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑GTAAAATTTTGAAAATCC‑AAAACTATAT‑Aaaaaaa                                                                                                >  2:2930867/3‑128 (MQ=255)

                                    catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGTTAAAAC‑AAAAATATAT‑aaaaaaaa                                                                                               >  1:2314515/3‑128 (MQ=255)

                                    catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑TAAAAT‑AAAATTTATTATTTGGATAAACC‑AAAAATTTTT‑Aaaaaaat                                                                                               >  1:5044867/3‑127 (MQ=255)

                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATTTTTTTATAAACC‑AAAAATATAT‑aaaaaaaa                                                                                               >  1:2617060/1‑128 (MQ=255)

                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑ATAAAATTTGGCTCAACC‑AAAAAAATATACaaaaaaa                                                                                               >  1:2211882/1‑128 (MQ=255)

                                      tAGGCTTTTTATTATACTTATCAACATAACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTTTTATTTT‑‑‑TTTTTTT‑‑‑‑AATAAT‑AAAA‑GAAATATTTTAATAAAAC‑AAAAATATAT‑AAAAAAAAt                                                                                              >  2:30792/1‑128 (MQ=255)

                                        tttttttttttATAATTATAAAAATTTAAACGCTTTTAAATTGTTTTTTTTTGG‑‑‑CTTT‑TTT‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTa                                                                                            <  2:1068555/125‑1 (MQ=255)

                                          cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATATTTTTATAAACC‑AAAAATATAA‑AAAAAAAATTaa                                                                                           >  1:1857111/1‑128 (MQ=255)

                                             tttattttatTTTTTAATATTACAACTCTTTAAAAGTGTTTTTTTTTGG‑‑‑CTTT‑TTT‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTaaaaaa                                                                                       <  1:704882/128‑1 (MQ=255)

                                             tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AATAAA‑TAAA‑TTAATATTTTATACAACA‑AAAACATTAT‑AAAAAAAATTataaaaaa                                                                                     >  2:4428763/1‑128 (MQ=255)

                                              ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑ATAAGTTTTGGATATACC‑AAAACTATAT‑GAAAAAAATTaaataa                                                                                       >  1:4378213/1‑128 (MQ=255)

                                              ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAAATTTTTGTAAAACCAAAAAGTAT‑T‑AAAAAAAAATaaaaaaa                                                                                      >  2:1540414/1‑128 (MQ=255)

                                               tattatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATATTTTTATCAACA‑AAAACTATAT‑AAAAAAAATTaaaaaaaa                                                                                     >  2:5262602/1‑128 (MQ=255)

                                                     cgatATCAAATTTAAAACTCTTTAAAATTTTTTTTTTTATG‑‑‑T‑‑‑‑TTT‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAAta‑gtttagt                                                                           <  2:5843841/125‑1 (MQ=255)

                                                     aCTTATTATAATTAAAACTGTTTCAAATTGTTTTTTTTTGG‑‑‑T‑‑‑‑TTG‑‑‑‑‑TTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAAta‑gtttagtt                                                                          <  2:2269599/128‑1 (MQ=255)

                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAT‑TTAATATTTGGTTAAAAA‑AAAAATTAAT‑AAAAAAAATAAAAAAAAAta‑tttt                                                                              >  1:6674161/1‑128 (MQ=255)

                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTTTTATTTTTTT‑‑‑‑AAAAAA‑AAAA‑TTAATTTTTGGATAAACC‑AAAAATATTT‑AAAAAAAATTaaaaaaataaattt                                                                               >  1:4178212/1‑121 (MQ=255)

                                                      cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAA‑AAAA‑ATAATTATTTGATCAACC‑AAAAATTAAT‑AAAAAAAAAAAAAAAAAAaa‑atttt                                                                             >  1:6181000/1‑127 (MQ=255)

                                                      cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑TTAATATTTTGATAAAAA‑AAAAATATAT‑AAAAAAAATTAAAAAAAAtatatta                                                                              >  1:136412/1‑123 (MQ=255)

                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTTTA‑‑AAAAAT‑AAAA‑TTAAAATTT‑TAACAACC‑ATAA‑AAAAT‑AAAAAAAATAAAAAAAAAaa‑attttttttgat                                                                      >  2:2004224/1‑120 (MQ=255)

                                                           cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAA‑AAAA‑TTAAGATTTTTATCAACC‑AAAAATATAT‑AAAAAAAATTAAAAAAAAta‑ttatagtta                                                                         >  1:6109657/1‑127 (MQ=255)

                                                               aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAA‑AAAA‑TTAATATTTGGATAAACC‑AAAATTATAT‑AAAAAAAATTAAAAAAATTA‑GTTTAGTTGTTTTTc                                                                   >  1:2979106/1‑128 (MQ=255)

                                                               aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGT‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑TTAAGTTTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTTGTGTAGtttaa                                                                  >  2:5183933/1‑126 (MQ=255)

                                                                ttACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAAGATTTGGATCACCC‑AAAAATATA‑‑AAAAAAAATTTAAAAAAATATGTTAAGTTTAGttac                                                                   >  1:6539371/1‑126 (MQ=255)

                                                                ttACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTTTTTAAAAAAT‑AAAA‑ATAATATTTGTTAAAACA‑AAAAATATAT‑AAAAAAAATTAAAAAAAAaa‑gttatttttatttt                                                                    >  2:400776/1‑117 (MQ=255)

                                                                 tACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATTTTTGGATAAACA‑AAAACTATAT‑CAAAAAAATTAAAAAAAATT‑TTTTAGTTTATTTTaaa                                                                 >  1:3088587/1‑128 (MQ=255)

                                                                  aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑AAAAAATTTTGATCAAAC‑AAAACAATTA‑GAATAAAATAAAAAAAAAaa‑atttagataaataaaaa                                                                 >  2:337547/1‑117 (MQ=255)

                                                                     aCGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATATTTGGATCAACC‑AAAACTTTAT‑AAAAAAAATTAAAAAAAAAA‑TTTTATTTAATTTTAAAAta                                                              >  1:5262960/1‑127 (MQ=255)

                                                                        gattttttgtgtTTTTTTTATG‑‑‑T‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTTTG‑‑TAAAAT‑AAAA‑GTAAGATTTGGATGAACC‑AAAACTATAT‑CAAAAAAATTAAATAAAATA‑GTTTAGTTGAGTTTCAAATCTGCa                                                          <  2:6259007/120‑1 (MQ=255)

                                                                        cTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAATATTTGGATAAAAA‑AAAAATATAT‑AAAAAAAATTAAAAAAAATA‑TTTTATTTTATTTTaaaaaattaa                                                          >  1:2420584/1‑122 (MQ=255)

                                                                          ttCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑TAAAAA‑AAAA‑TTAAAATTTTGATAAAAC‑AAAAAAAATT‑AAAAAAAAATAAAAAAAATA‑TTTTTTTTGTATTTTAAAtaatcat                                                         >  1:2798103/1‑122 (MQ=255)

                                                                           taaaaTTGTATTTTTTAGG‑‑‑T‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCatat                                                       <  1:6262153/126‑1 (MQ=255)

                                                                           tCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAAGAAAGGGAAACACC‑AAAAAATAAA‑AAAAAAAAATAAAAAAAATA‑TTTTTGTTGATGTTAAAATATgaaa                                                         >  2:5489507/1‑125 (MQ=255)

                                                                           tCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAA‑AAAA‑TTAATATTTTGAAAAACC‑AAAAAAAAAA‑AAAAAAAATTAAAAAAAAAA‑TTTTTTTTAATTTTCatatattata                                                         >  2:2600833/1‑122 (MQ=255)

                                                                            cAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAAGATTTGGATAAACC‑AAAACTATAT‑AAAAAAAATTAAAAAAAATA‑TTTTATTTTATTTTCAAATATGAAtatata                                                    >  1:5752906/1‑128 (MQ=255)

                                                                              aaGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAA‑AAAA‑TTAAGATTTGGATAAACA‑AAAAATTTAT‑CAAAAAAATTAAAAAAAATA‑TTTTATTTTAGTTTAAAATCTGCaaatat                                                     >  1:4708832/1‑128 (MQ=255)

                                                                                  gtATTTTTTAGG‑‑‑C‑‑‑‑TTGTTTTTTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAA‑AAAA‑TTAATTTTTTGATAAACC‑AAAAATATAA‑AAAAAAAATTAAAAAAAATA‑TTTTTTTTTATTTTAAAAAATGAatataatat                                                  >  1:1737640/1‑124 (MQ=255)

                                                                                   tATTTTTTAGG‑‑‑C‑‑‑‑TTGTT‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAATAAAAA‑TTAATATTTGTATAACAC‑AAAAATAATA‑AAAAAAAATAAAAAAAAATA‑TTTTATTTTATTTAAAAATCTAAAAATATATTaa                                                >  2:2488252/1‑127 (MQ=255)

                                                                                     ttttttttG‑‑‑T‑‑‑‑TTT‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAgg                                           <  2:1635994/128‑1 (MQ=255)

                                                                                       ttttAGG‑‑‑C‑‑‑‑TTGTTT‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTTT‑‑‑‑AAAAAT‑AAAA‑TTAAGATTTGGATCAACC‑AAAAATTTAT‑AAAAAAAATTAAAAAAAATT‑TTTTTTTTTAGTTTAAAATCTGAATATTTATTAaaaat                                            >  1:1568406/1‑127 (MQ=255)

                                                                                                  taggcttgtttttttttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAA‑AAAA‑TTAAGATTTTGATAAACC‑AAAAATATAT‑AAAAAAAATTAAAAAAAATA‑TTTTATTTTTTTTTAAAATCTGAAAATATATTAAAAAGGaa                                         >  2:2131810/12‑128 (MQ=255)

                                                                                                    tttttttttttttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑TATATT‑AAAA‑TTTAGATTTGGTTTAAAC‑ATAAATATAT‑TAATTAAATTTAAATTAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                       <  2:1267121/119‑1 (MQ=255)

                                                                                                     ttctttgtttttttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                      <  2:674929/120‑1 (MQ=255)

                                                                                                      tttttttttttttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑ATAAAT‑AAAA‑GTATGATTTGGTTCAACC‑AATACTATAT‑ATAATTAATTAAAAAATATA‑GTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTa                                     <  2:6143858/121‑1 (MQ=255)

                                                                                                      ttgttttttttttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAT‑AAAA‑TTAAGATTTGGATAAACC‑CAAACTTTAT‑CAAAAAAATTAAAAAAAAAT‑TTTTAGTTGATTTTAAAATCTGCATATAAAGTAAAAAAGAAtttt                                     >  1:771395/8‑127 (MQ=255)

                                                                                                       ttttttttttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTTTAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                    <  2:5135349/122‑1 (MQ=255)

                                                                                                       ttttttttttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                    <  2:1701513/122‑1 (MQ=255)

                                                                                                        tttttttttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATAAACC‑AAAACTATAT‑AAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                                   <  1:5213023/123‑1 (MQ=255)

                                                                                                         ttttttttttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAT‑AAAA‑TTTATATTTTGATAAACC‑AAAAAATTAT‑AAAAAAAATTAAAAAAAATA‑TTTTATTTTATTTTAAAAAATGAATTTATATTAAAAAGTAAttattta                                  >  2:5979163/5‑123 (MQ=255)

                                                                                                         ttttttttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                  <  2:468151/124‑1 (MQ=255)

                                                                                                            tttttttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAT‑AAAA‑GTAAGTTTTGGATCAACC‑AAAAATATAT‑AAAAAAAATTAAAAAAAATA‑TTTTATTTGTGTTTCAAATATTCATATTTATTAAAAAGGAATTTaatatta                               >  1:1012791/2‑122 (MQ=255)

                                                                                                              tttttt‑‑‑tttt‑‑‑ttttttT‑‑‑‑AAAAAT‑AATA‑GTAAGATTTGGATCAACA‑TAAAATATAT‑AAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  1:3574831/128‑1 (MQ=255)

                                                                                                              tttttt‑‑‑tttt‑‑‑ttttttT‑‑‑‑AAAAAT‑AAAA‑GTAAGTTTTTGATCAAAA‑ATATCTATTT‑CATAAAATTTAAAAAAAATA‑GTTTAGTTGAGTTTCTAATCTGCATTTATAGTACAAAGGAATTTATGATAGaa                             <  1:4263072/128‑1 (MQ=255)

                                                                                                              tttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑TAAATT‑AAAA‑TTTATATTTTGTTTAAAC‑AAAAATTTAT‑TAAAAAAATTTAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  2:3831640/128‑1 (MQ=255)

                                                                                                              tttttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGTATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGaa                             <  1:6347433/128‑1 (MQ=255)

                                                                                                                 ttt‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAT‑AAAA‑TTAAGATTTTGATCAACA‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  2:5328460/128‑1 (MQ=255)

                                                                                                                 ttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑TATATT‑AAAA‑GTAAGATTTGGATCATCC‑AAAAATATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  1:547939/128‑1 (MQ=255)

                                                                                                                 ttt‑‑‑tttt‑‑‑tttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  2:5580268/128‑1 (MQ=255)

                                                                                                                   t‑‑‑tttt‑‑‑ttttttt‑‑‑‑AAAAAT‑AAAA‑GTAATATTTTGATCAATA‑AAATCTATAT‑TAAAAATATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                        <  1:1665701/128‑1 (MQ=255)

                                                                                                                          t‑‑‑ttttttt‑‑‑‑AATATT‑AAAA‑GTATGATTTTGATAAATT‑AAAACTATAT‑TAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                    <  2:3647508/128‑1 (MQ=255)

                                                                                                                          t‑‑‑ttttttt‑‑‑‑AATAAT‑TTAA‑GTAAGATTTGGATCAACA‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                    <  2:6555745/128‑1 (MQ=255)

                                                                                                                              tttttGT‑‑‑‑AAAAAT‑AATA‑GTAAGATTTGTATCAACA‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                   <  2:5743008/128‑1 (MQ=255)

                                                                                                                               ttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGTATAAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                  <  2:541672/128‑1 (MQ=255)

                                                                                                                               ttttGT‑‑‑‑AAAAAT‑AAAA‑GTAAGAATTGGATCAACA‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                  <  1:854602/128‑1 (MQ=255)

                                                                                                                                 ttGT‑‑‑‑TAAAAT‑AAAA‑TTAATATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  1:3628016/128‑1 (MQ=255)

                                                                                                                                  ttt‑‑‑‑AAAAAT‑AAAT‑TTAAGATTTTGATCAAAC‑AAAAGTATAT‑AAAAAATATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAATGGAATTTATGATAGAAAAAAATGGATTAGt               <  1:5835049/126‑1 (MQ=255)

                                                                                                                                   gT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTTGATAAATT‑ATATCTATAT‑CTAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca              <  1:5647638/128‑4 (MQ=255)

                                                                                                                                        gtattatttata‑GTAAGATTTGGATTAAAT‑AAAAATATAT‑CAAATATATTAAATATAATA‑GTTTAGTTGAGTTTTATATCTTCATATATATTACAAATGAATTTATGATAGAAAAAAATGGATTAGtt              <  2:82847/117‑1 (MQ=255)

                                                                                                                                         aaaatt‑aaaa‑ttAAGATTTGTATTAAAT‑AAAACTATAT‑AAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa            <  1:1948619/128‑1 (MQ=255)

                                                                                                                                         aaaaaT‑ATAA‑GTAAGATTTGGATATACT‑AAAACTATAT‑AAAAAAAATTAAAAAATATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac            <  1:3417693/128‑6 (MQ=255)

                                                                                                                                          aaaaT‑AAAA‑GTAAGATTTGGATCAATC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAGTTGAt           <  1:4043129/128‑1 (MQ=255)

                                                                                                                                             aT‑AAAT‑GTAAGATTTTGATCAATA‑AAAAATATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTatcaactaat        <  1:4556858/128‑10 (MQ=255)

                                                                                                                                             aT‑AAAA‑TTAAGATTTGGATCAAAC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt        <  1:1465585/128‑1 (MQ=255)

                                                                                                                                             aT‑AAAA‑GTAAGATTTGGATAAACC‑TAAATTATAT‑CTAATAATTTAAATAAAATT‑TTTTATTTGAGTTTCATATCTGCATATATAGTTCAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt        <  2:3523592/128‑1 (MQ=255)

                                                                                                                                                taaa‑GTAAGATTTTGATAAATC‑AATAATATAT‑TAAATATATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:5936683/127‑1 (MQ=255)

                                                                                                                                                aaaa‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTTATAAtac      >  2:239900/1‑126 (MQ=255)

                                                                                                                                                aaaa‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      >  1:6457548/1‑128 (MQ=255)

                                                                                                                                                 aaa‑GTAATATTTTTATAAAAA‑AAAACTATAT‑AAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     <  1:3252909/128‑1 (MQ=255)

                                                                                                                                                 aaa‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa     >  1:382970/1‑128 (MQ=255)

                                                                                                                                                  aa‑GTAAGATTTGTATCAAAA‑TAATATATAT‑CAAAAAAATTAAATAAAATT‑GTTTAGTTGAGTTTCAAATATGCATATTTAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  2:6089604/128‑1 (MQ=255)

                                                                                                                                                  aa‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    >  2:6427509/1‑128 (MQ=255)

                                                                                                                                                  aa‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAATAGTTGATAATCCAt    >  1:6036611/1‑128 (MQ=255)

                                                                                                                                                  aa‑GTAAGATTTGGATCAACA‑AAAACTATAT‑CAATATAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  1:975624/128‑1 (MQ=255)

                                                                                                                                                   a‑GTAAGTTTTGTTTAAAAC‑AAAAATATAT‑TAAAAAAATTTAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt   <  2:1862019/128‑1 (MQ=255)

                                                                                                                                                   a‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt   <  1:5395786/128‑1 (MQ=255)

                                                                                                                                                   a‑GTAAGATTTGGATATAAA‑AAATCTATAT‑CTATAAATTTAAATAAAATA‑TTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtt   <  1:2059161/128‑1 (MQ=255)

TTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑‑C‑‑‑‑TTG‑‑‑‑TTTTTTT‑‑‑TTTT‑‑‑TTTTTGT‑‑‑‑AAAAAT‑AAAA‑GTAAGATTTGGATCAACC‑AAAACTATAT‑CAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203798‑204051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`