Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.59.8% 231.9 / inf 510intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (29/139);  new base . (112/138);  total (188/322)
Fisher's exact test for biased strand distribution p-value = 2.68e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.52e-03

Only 100 of 572 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAAT  >  CP016816/202359‑202610
                                                                                                                                   |                                                                                                                              
  ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAACAACAATCCCCttaa                                                                                                                              >  2:5817240/1‑126 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAttaaaaattaaa                                                                                                                      >  2:6146546/1‑118 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCAttaaaaattaaa                                                                                                                      >  2:622203/1‑118 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATATTCACAAAT‑AAAAAAAAAAAAATCCCCttaaaaataaaa                                                                                                                      >  2:3615035/1‑118 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaaaaat‑aaaa                                                                                                                  >  1:5642522/1‑128 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTAACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaaaaat‑aaaa                                                                                                                  >  2:5930808/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTATTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAACACC‑‑Ttaaaaatt‑aaaaaa                                                                                                                >  1:1229792/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATC‑TA‑TTTTTTTA‑TATTTTTATATTCACAAAT‑AAAAAAAAAAAAATCACAtt‑‑‑aaaaat‑aaaaaa                                                                                                                >  1:362022/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGAACCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑aaaaat‑aaaaaa                                                                                                                >  2:5294958/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAAC‑‑ATTAAAAAAT‑aaaaaaaa                                                                                                              >  1:37236/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAAT‑taaaaaaaa                                                                                                             >  2:843387/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAA‑‑AACAATTAAAAAAT‑aaaaaaaa                                                                                                              >  2:1526333/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGAACCTCGTGATC‑TA‑TTTTTTAA‑TTTTTTTATATTCACAAAT‑AAAAAAAAAACAAACACCAT‑‑‑AAAAAT‑aaaaaaaaaaaaa                                                                                                         >  2:3435922/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAATAAAAAAAAAAACAAACCCC‑‑TTAAAAAAT‑aaaaaaaaaaaa                                                                                                          >  2:762688/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTAACAAAT‑AAAAAAAAAACAATACAC‑‑TTAAAAATT‑aaaaaaaaaaaaa                                                                                                         >  2:458524/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaa                                                                                                        >  2:5663310/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTATATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAAAAT‑taaaaaaaaaaaaaa                                                                                                       >  2:2816427/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCGTGATC‑TA‑TTTTTTTA‑TTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAAAAAT‑taaaaaaaaaaaaaaa                                                                                                      >  1:4827751/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATC‑TA‑ATTATATA‑TATATTTATCTTAACAAAT‑AAAAAAAAAAAAA‑‑AAAAAATAAAAATT‑aaaaaaaaaaaaaaa                                                                                                       >  1:4454871/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATC‑TA‑TTATAATA‑TAAGATTAACTACACAAAT‑AAAAAAAAAACAAAACCCATaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                         >  2:3914047/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAAATT‑aaaaaaaaaaaaaaa                                                                                                       >  1:3526138/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACTT‑‑‑AAAAAT‑aaaaaaaaaaaaaaaa                                                                                                      >  2:2359763/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACACAT‑‑‑AAAAAT‑aaaaaaaaaaaaaaaa                                                                                                      >  2:1889932/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATA‑TA‑TATTTTAA‑TTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAATCCAATTaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                         >  2:6496209/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTATATCCTCGAAATC‑TA‑ATTTTTAA‑TATTTTAATCTTCACAAAA‑AAAAAAAAAAAAAACCACTAaaaaaaaaa‑aaaaaaaaaaaaa                                                                                                         >  2:6731972/1‑128 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaa                                                                                                      >  1:6120334/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TA‑TTTTTTTA‑TTTATTTATATTCAAAAAT‑AAAAAAAAAAAAAT‑‑‑AAAATAAAAAAT‑taaaaaaaaaaaaaaaaa                                                                                                    >  1:4119922/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:5605569/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAACCCC‑‑ATAAAAATT‑aaaaaaaaaaaaaaaaaa                                                                                                    >  2:2059072/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑ATTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAAC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaa                                                                                                     >  1:5206451/1‑128 (MQ=255)
                        ggTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCATT‑‑‑AAAAAT‑aaaaaaaaaaaaaaaaaa                                                                                                    >  2:1731165/1‑128 (MQ=255)
                          ttaattaaAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTTATC‑TA‑ATTTTTTA‑TTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAACAAC‑‑‑TAAAAAAT‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:6764707/1‑128 (MQ=255)
                          ttaaataaAAAAACAAAAAATAAATAAATATTATAATTTTTATACTCTTTTTT‑TA‑TTTTTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaa                                                                                                   <  2:5342521/128‑1 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:799837/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:6076345/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGACCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACAC‑‑TAAAAAAAT‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:1376819/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TAAAAAATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:634162/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:691651/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAATAaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:5122162/1‑128 (MQ=255)
                              ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:6673186/1‑125 (MQ=255)
                               taaAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTTATA‑TA‑TTTTTTTA‑TTTGAATATCTTCACAAAT‑AAAAAAAAAAAAATACAC‑‑TAAAAAATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:3201045/1‑125 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                                >  1:5462610/1‑96 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCATT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAAACa‑aaaaa                                                                                         >  2:6002586/1‑128 (MQ=255)
                                   aaaacaaaaaaTTAATAATTTTTAAAATTTATATACAAGTTTTT‑TT‑TTTTTTTT‑TTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAaaac                                                                                        <  1:5519145/121‑1 (MQ=255)
                                     taaaTAAAATTATAAATTTTTATAAATTATAACCTCGTTTTA‑TA‑TTTTTTTA‑TTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAaaaca                                                                                       <  1:2134414/125‑1 (MQ=255)
                                     aacttaaaaataaaaaTTCTTTAAATTTTTATCCTCGTTTTC‑TT‑TTTTTTTA‑TTTTTTTATATTAAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAaaacaa                                                                                      <  2:6610823/118‑1 (MQ=255)
                                         taaaaatattaatTTTTTAAATTTAGATCCTAGTGATA‑TA‑TTTTTTTT‑TTTGTTTTTTTTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTa                                                                                <  2:4732467/119‑1 (MQ=255)
                                          ataaataataaTTATTAAAATTTATCTACTCGTTATA‑TA‑TTTTTTTA‑TTTTTTTTTATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TTAAAAAAAAAAAAAAAAAAACT‑AAAAACAAActct                                                                                 <  2:5215104/123‑1 (MQ=255)
                                            acataataaTTCTTATAATTGTTCTCCTCGTGATCATA‑TTTTTTT‑‑TTTTTTTTTTTTACCAAAA‑AAAATAAAAAACATGCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTa                                                                                <  2:6797993/125‑1 (MQ=255)
                                             attAATAATTATTATAATTTATATACTCTTTATC‑AA‑TTTTTTTA‑TTTTTTTATATTAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTAtt                                                                              <  1:2317653/127‑1 (MQ=255)
                                               taataaTTATTATAATTTTAATAATCTTTATA‑TA‑TTTTTTTA‑TTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCt                                                                           <  1:2436391/128‑1 (MQ=255)
                                                    attattATAATTTATATACTATTTATT‑TA‑TTTTTTTA‑TTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTaa                                                                        <  1:5318764/128‑1 (MQ=255)
                                                             aTGTAGAACCTCTTTATA‑TA‑TTTTTTTA‑TTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑‑‑‑TAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                           <  1:1499750/128‑1 (MQ=255)
                                                              tGTATATCCTAGTTTTA‑TA‑TTTTTTTA‑TTTGTTTATCTTCAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                             <  1:6470038/128‑1 (MQ=255)
                                                               gtatataaacGTGATC‑TT‑TTTTTTTA‑TTTGTTTTTATTTACAAAT‑AAAAAAAAAAAAATACCC‑‑ATAAAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                             <  1:5294958/119‑1 (MQ=255)
                                                                ttaatacTCGTTATC‑TT‑TTTTTTTT‑ATTTTTTATATTTACAAAA‑AAAAAAAAAACAAACACCTTTTAATTTA‑‑AAAATATAAAAAAAAAAAAAACT‑AATAACAAACTCTATTTCTTAAAATTCCCtatt                                                             <  1:3909445/122‑1 (MQ=255)
                                                                 acatacacGTTATC‑TA‑TTTTTTTT‑ATTGTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                           <  1:5698135/121‑1 (MQ=255)
                                                                  tatactagtttac‑TA‑TTTTTTTA‑TTTGTTTATAATAAAAAAA‑AAAAAAAAAAAAAATCCCATT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                          <  1:1350904/116‑1 (MQ=255)
                                                                  ataacTCGTTATT‑TA‑TTTTTTTT‑ATTTTTTATATTAAAAAAT‑AAAAAAAAAACAATACCCTTT‑‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                          <  1:6538370/124‑1 (MQ=255)
                                                                    tttatttttttata‑ttttttta‑ttttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                         <  2:5767536/116‑1 (MQ=255)
                                                                     acTCGTTATA‑TA‑TTTTTTTA‑ATTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAATACC‑AATAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                        <  1:5878935/127‑1 (MQ=255)
                                                                     acTCGTGTTT‑TATTTTTTTTA‑TTTTTTAATATAAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑‑TAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                       <  1:5858835/127‑1 (MQ=255)
                                                                     aatattttatatA‑TTTTTTTA‑TTTTTATAATTAAAAAAAA‑TAAAAAAAAAAAATACCATTT‑‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAATCTCTATTTCTTAAAATTCCCTATTATAcc                                                        <  1:1728174/117‑1 (MQ=255)
                                                                      actctttttata‑ttttttta‑ttttttTATATTAAAAAAA‑AAAAAAAAAAAAATACCCTTTAAAATTAA‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                         <  1:2369581/118‑1 (MQ=255)
                                                                       ctagtttttaa‑ttttttta‑tttttttATAATAAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAAATT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                      <  1:5025930/118‑1 (MQ=255)
                                                                          tttttata‑ttttttta‑ttttttTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                   <  1:919291/122‑1 (MQ=255)
                                                                          gataataa‑TTTTTTTA‑ATTTTTAATATTAAAAAAT‑AAAAAAAAA‑‑AATAACCCATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                   <  1:2605687/121‑1 (MQ=255)
                                                                            tatata‑ttttttta‑ttttttTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                 <  1:6641004/124‑1 (MQ=255)
                                                                            gtttaa‑tttttttatttttttTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                  <  2:5457250/123‑1 (MQ=255)
                                                                            aTC‑TA‑TTTTTTTA‑TTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                <  1:5732900/128‑1 (MQ=255)
                                                                                 a‑TTTTTTTA‑TTTTTATATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                            <  1:310917/128‑1 (MQ=255)
                                                                                   ttttttta‑ttttttttatATAAAAAAA‑AAAAAAAAAAAAATACC‑‑AATAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                           <  1:3065034/128‑1 (MQ=255)
                                                                                   ttttttta‑tttttttaTAATAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                           <  1:2955353/128‑1 (MQ=255)
                                                                                   tttttttA‑ATTTTTTAAATAAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                           <  1:3397723/128‑1 (MQ=255)
                                                                                   ttattttt‑tttttttATAATAAAAAAA‑AAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                         <  1:3216145/125‑1 (MQ=255)
                                                                                    ttttttt‑tttttttATATTTAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                          <  2:1221390/128‑1 (MQ=255)
                                                                                    ttttttA‑TTTTTTTAAAATAACAAAT‑AAAAAAAAAAAAATACAC‑TTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                           <  1:1053686/128‑1 (MQ=255)
                                                                                     tttttA‑TTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                         <  1:5605569/128‑1 (MQ=255)
                                                                                      ttttA‑TTTTTTTATAAAAAAAAAA‑AAAAAAAAAACAATCCACTTT‑‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                        <  1:2796166/128‑1 (MQ=255)
                                                                                        ttA‑TTTTTTTATCTTAAAAAAA‑AAAAAAAAAAAAATAACC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                     <  1:4581216/128‑1 (MQ=255)
                                                                                         tA‑TTTTTTAATATTCACAAA‑‑AAAAAAAAAAAAATACAC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                    <  1:1780943/128‑1 (MQ=255)
                                                                                          ttttttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                    <  2:246375/126‑1 (MQ=255)
                                                                                             tttttttTCTTTAAAAAT‑AAAAAAAAAAAAAATACCCTTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                    <  1:6238522/125‑1 (MQ=255)
                                                                                             ttttttATCATAAAAAAT‑AAAAAAAAAAAAAT‑CCCTTTT‑‑AAAAT‑‑TAAAAAAAAAAAAAAAAAAACT‑TAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                <  2:798671/125‑1 (MQ=255)
                                                                                               ttttatataaaaaaaT‑AAAAAAAAAAAAATGCC‑‑ATTATAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                <  1:4319261/116‑1 (MQ=255)
                                                                                               ttttataataaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                <  1:1965319/116‑1 (MQ=255)
                                                                                                tttATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatat                               <  1:1918938/128‑1 (MQ=255)
                                                                                                 tttttttaaaaaaT‑AAAAAAAAAAAAATTACATTT‑‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                              <  1:5378434/118‑1 (MQ=255)
                                                                                                  tttttataaaaaa‑aaaaaaaaaaaaaaaaCCATATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                              <  1:1617914/119‑1 (MQ=255)
                                                                                                  tATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAAAT‑AAAAAAAAACTAAATTTAATATAAATAAAAATTAAACCACATTTTATTTTTAAAATaaaaatttg                             >  1:617950/1‑121 (MQ=255)
                                                                                                       tCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑‑‑AAAAACAAAATATATTTTTTAAAATACCATATTAAACCAAATTTTATTTTTAAAATAAAAATTTGAAataa                       >  2:6294963/1‑128 (MQ=255)
                                                                                                              t‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAAAT‑AAAAAAAAACACTATTTATTAAAATTACCAATTATAACACATTTTATTTTTAAAATAATATATTTAAatataattaa                 >  1:5813790/1‑121 (MQ=255)
                                                                                                              aaaaaaaaaaaaaaATACCC‑ATAAAAATTA‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                   <  1:5994530/126‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaaaATACCC‑‑TTAAAAAAT‑‑‑‑AAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc               <  2:4119922/126‑1 (MQ=255)
                                                                                                               aaaaaaaaaaaaaATCCCCTTT‑‑AAAATT‑AAAAAAAAAAAAAAAAAAAAACT‑AATATCAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                 <  1:6027720/127‑1 (MQ=255)
                                                                                                                  aaaaaaaaCAAACCC‑‑ATAAAAAATTAAAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc               <  2:5712189/128‑1 (MQ=255)
                                                                                                                     aaaaaCAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata          <  1:2234500/128‑1 (MQ=255)
                                                                                                                       aaaCAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAA‑A‑AAAAACAAAATCAATTACTTAAAATACCATATTATAACAAAATTATATTTTAAAATAATATATTAAAATAATATATATAAAatata        >  1:6345556/1‑128 (MQ=255)
                                                                                                                         aCAATCCCC‑‑TTAAAAATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAAACAACAAAAATTTATTAAAAAAACATAATATACAAAATTTTTTTTTTAAAAAAAAATATTGACTTAaaatataaaaaaaaat        >  2:4468272/1‑119 (MQ=255)
                                                                                                                           aaataacatttaaaattt‑aaaaAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat       <  1:5921300/120‑1 (MQ=255)
                                                                                                                                   |                                                                                                                              
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TA‑TTTTTTTA‑TTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAAAAAAAAAAAAAACT‑AAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAAT  >  CP016816/202359‑202610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑