Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.73.8% 538.5 / inf 510intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (27/86);  new base . (133/186);  total (189/321)
Fisher's exact test for biased strand distribution p-value = 6.75e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-01

Only 100 of 579 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608
                                                                                                                                 |                                                                                                                           
aatatAGAGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAAAAATTCTTATAAAGTAGATCCTCGTGATCTATTTTTTTATTTGTTAATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCt                                                                                                                             <  1:4552705/124‑1 (MQ=255)
aaGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCt                                                                                                                             <  2:2693713/128‑1 (MQ=255)
  gttatggttaattatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATTTAATGTATTTCGTCGTGTTATATTTTTTTTTTTGGTTATCTTAACAAAT‑‑AAAAAAAAAACAATCCCCtta                                                                                                                           <  2:460112/119‑2 (MQ=255)
  attAGTGTAAATACTAGAGTTAATGTAATTTAAAATACTATAAAATTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTGTTTATCTTCACAAATA‑AAAAAAAAAACAATCCCCtt                                                                                                                            <  2:3062703/127‑1 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCAttaaaaattaaa                                                                                                                  >  2:6146546/1‑118 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCACCttaaaaattaaa                                                                                                                  >  1:5765348/1‑118 (MQ=255)
           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCCAttaaaaattaaa                                                                                                                  >  2:622203/1‑118 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTTATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑‑AAAATAAAAACAATCCCCTATaaaattatatcgta                                                                                                             >  1:1741397/1‑118 (MQ=255)
                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATtaaaaaaaa                                                                                                          >  2:843387/1‑128 (MQ=255)
                  gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaa                                                                                                         >  2:4477703/1‑128 (MQ=255)
                   agTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                       >  1:5018339/1‑128 (MQ=255)
                    gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATATATTTATCTTAACAAAT‑‑AAAAAAAAAACAAACAC‑‑AATAAAAATTaaaaaaaaaaaa                                                                                                       >  1:2479024/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATA‑AAAAAAAAAACAAACCCC‑‑TTAAAAAATaaaaaaaaaaaa                                                                                                       >  2:762688/1‑128 (MQ=255)
                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATATATATTAGATTATCTACACAAAT‑‑AAAAAAAAAACAATAAACTT‑‑‑AAAAATaaaaaaaaaaaaaa                                                                                                     >  1:2357986/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑‑AAAAAAAAAACAAAACAAATAaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:2186443/1‑128 (MQ=255)
                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATACCC‑‑TAAAAAAATaaaaaaaaaaaaaa                                                                                                     >  2:3232493/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑‑AAAAAAAAAAAAAT‑‑‑AAAATAAAAAATtaaaaaaaaaaaaaaa                                                                                                   >  1:4827751/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTAATTATATATATATTTATCTTAACAAAT‑‑AAAAAAAAAAAAA‑‑AAAAAATAAAAATTaaaaaaaaaaaaaaa                                                                                                    >  1:4454871/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaaa                                                                                                    >  1:3526138/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCAACTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                   >  1:2754513/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCAAC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                   >  2:1724734/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCC‑‑ATTAAAAATTaaaaaaaaaaaaaaa                                                                                                    >  2:5625146/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATATTTTAATTTGTTTATCTTCAAAAAT‑‑AAAAAAAAAAAAATCCAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:6496209/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTATTTTATTATATTCACAAAA‑‑AAAAAAAAAAAAAAAACCTAaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:6216187/1‑128 (MQ=255)
                       aaGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTATATCCTCGAAATCTAATTTTTAATATTTTAATCTTCACAAAA‑‑AAAAAAAAAAAAAACCACTAaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:6731972/1‑128 (MQ=255)
                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACACC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaa                                                                                                  >  2:3921465/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCTTTATCTATTTATTTAATTATTTATCTTCACAAAT‑‑AAAAAAAAAACAAAAAACTAaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:4204104/1‑128 (MQ=255)
                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCAACGTGATCTAATTTTAAATATATATATATTAACAAAT‑‑AAAAAAAAAAAAAT‑‑CCAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                  >  2:5365947/1‑128 (MQ=255)
                          gTTAATTAAAAAAACATAAAATTAAAAATTATTTTAATTTATTTTATATTTTTTTATTTTTTTATTTTTTTATATTTAAAAAT‑‑AAAAAAAAAAAAATACAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                 <  2:3529469/128‑1 (MQ=255)
                           ttaattaaAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTTATCTAATTTTTTATTTTTTTATCTTCACAAAT‑‑AAAAAAAAAAAAAACAAC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:6764707/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:799837/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:5195645/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:6076345/1‑128 (MQ=255)
                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTATTTTATTAGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCAC‑‑AAAAAAAATaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:2402263/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  2:634162/1‑128 (MQ=255)
                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:691651/1‑128 (MQ=255)
                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:5851251/1‑127 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:6783577/1‑126 (MQ=255)
                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:6673186/1‑125 (MQ=255)
                                taaAAAACAAAAAAATTAAAAAATATTAAAATTTATATCCTCGTTATATTTTTTTTTTTTTGTTTATCTTCAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTa                                                                                           <  2:5950397/128‑1 (MQ=255)
                                 aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCtt                                                                                                                            <  2:5462610/96‑1 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:6120405/1‑123 (MQ=255)
                                  aaaTACCATAAACTTAATAATTCTAATAATGAAGATCATCGTGAACAAAAATTATATTTTATTAACAAAAAAAAT‑‑AAAAAAAAAACAATACCCTAAAAAATTATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:4781031/1‑125 (MQ=255)
                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAAACCCATT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACaaaaaa                                                                                       >  2:6002586/1‑128 (MQ=255)
                                     ttacATAAACTTAAAAATTATTATTATTTTGAAACTATTTTTCTAATTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                      <  1:2378977/125‑1 (MQ=255)
                                     tACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAAaaaca                                                                                     >  2:5683152/1‑128 (MQ=255)
                                      aacttaaaaataaaaaTTCTTTAAATTTTTATCCTCGTTTTCTTTTTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                    <  2:6610823/118‑1 (MQ=255)
                                      aaaaTAAAATTAATAATTTTTAAAATTTTTTTAATCGTTTTATTTTTTTTTTTTTTTTTTTTTTAAAAAAA‑‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                     <  2:203375/125‑1 (MQ=255)
                                        aataaaaataaaaATTATTATAATTTATAAACTATTTATATATTTTTTTATTTTTTTAAAATCAAAAAA‑‑AAAAAAAAAAAAAACCCCTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                   <  1:526157/127‑1 (MQ=255)
                                         aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAATaaaaaaaaaaa                                                                                  >  2:1879856/1‑127 (MQ=255)
                                         aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCAC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAATAaaaaaaaa                                                                                   >  1:1362468/1‑128 (MQ=255)
                                            taattAATAATTAAAATAATGTACATCATCTTGTTATATTTTTTTATTTTTTTATCTTAAAAAAA‑‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  2:3737121/125‑1 (MQ=255)
                                            aaattAAAAATTATTATAATGTACATCCTCGTTATATATTTTTTTTTTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:5683152/125‑1 (MQ=255)
                                             aCTTAAAAATTATTTAAATTTATATCCATCTTATATATTTTTTTATTTTTTTATATTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:5920782/128‑1 (MQ=255)
                                              atttaaaatTCTTAAAATTTATTTACTCTTTATATATTTTTTTTTTTTTTTATTTTAAAAAAT‑‑AAAAAAAAAA‑AAACCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                             <  2:1229792/122‑1 (MQ=255)
                                                 aataatTCTTATAATGTAGATACACTTTATCTATTTTTTTATTTTTTTATATTCAAAAAT‑‑‑AAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  1:305371/128‑1 (MQ=255)
                                                     attattATAATTTATATACTATTTATTTATTTTTTTATTTTTTTATTTTAAAAAAT‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                      <  1:5318764/128‑1 (MQ=255)
                                                               tGTATATCCTAGTTTTATATTTTTTTATTTGTTTATCTTCAAAAAA‑‑AAAAAAAAAAAAATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                           <  1:6470038/128‑1 (MQ=255)
                                                               attaattactctTGATATATTTTTTTTATTTTTAAATTTAAAAAAA‑‑AAAAAAAAAACAATAACC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTTAAATTCCCtat                                                            <  1:1635235/120‑1 (MQ=255)
                                                                 tttatatagctGATTTATTTTTTTATTTTTTTTTTTTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                          <  2:5778969/118‑1 (MQ=255)
                                                                 ttaatacTCGTTATCTTTTTTTTTTATTTTTTATATTTACAAAA‑‑AAAAAAAAAACAAACACCTTTTAATTTA‑AAAATATAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCtatt                                                           <  1:3909445/122‑1 (MQ=255)
                                                                   ataacTCGTTATTTATTTTTTTTATTTTTTATATTAAAAAAT‑‑AAAAAAAAAACAATACCCTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                        <  1:6538370/124‑1 (MQ=255)
                                                                      acTCGTTATATATTTTTTTAATTTTTTATATTAAAAAAT‑‑AAAAAAAAAAAAAATACC‑AATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                      <  1:5878935/127‑1 (MQ=255)
                                                                        ttttttatttttttttttttttttTAAATAAAAAAAA‑‑AAAAAAAAAAAAATCCCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  1:1553964/118‑1 (MQ=255)
                                                                        tgtttgttttattttttttttttttATTAAAAAAAAA‑‑AAAAAAAAAAAAATAACC‑‑TTATAAAAT‑TAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTACTTAAAATTCCCTATTATACCACat                                                  <  2:1371796/117‑1 (MQ=255)
                                                                        tatttaTCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                    <  1:5556619/123‑1 (MQ=255)
                                                                        tCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACACATTTTTGTAAATTTCACTATTTTAcgaaa                                                   >  2:6296551/1‑124 (MQ=255)
                                                                         ctttaTCTATTTTATTATTTTTTTATATTAAAAAAT‑‑TAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:3092052/124‑1 (MQ=255)
                                                                         cGTTATATATTTTTTTATTTGTTTATCTTCAAAAAA‑‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                  <  1:227348/128‑1 (MQ=255)
                                                                          tttttatatttttttattttttTTTATTAAAAAAA‑‑AAAAAAAAAACAATACCCTT‑‑‑AAAAATTATAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:1795169/122‑1 (MQ=255)
                                                                          tttttatatttttttattttttTATATTAAAAAAA‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                 <  1:919291/122‑1 (MQ=255)
                                                                          cttatatATTTTTTTTATTGTTTAATATAACAAAA‑‑AAAAAAAAAACAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                 <  1:1920948/122‑1 (MQ=255)
                                                                           ttatatATTTTTTTAATTTTTTATATTTAAAAAT‑‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:2079310/123‑1 (MQ=255)
                                                                            tatatatttttttattttttTAAATTAAAAAAA‑‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                               <  1:6641004/124‑1 (MQ=255)
                                                                                 aTTTTTTTTTTTTTTTTTATTAAAAAAA‑‑AAAAAAAAAAAAATCCCC‑‑ATAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:5712441/128‑1 (MQ=255)
                                                                                  tttttttatttttttaT‑TTAAAAAAA‑‑AAAAAAAAAAAAATCCCC‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                         <  2:5245815/128‑1 (MQ=255)
                                                                                  ttattttttttttttATAATAAAAAAA‑‑AAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                       <  1:3216145/125‑1 (MQ=255)
                                                                                   ttttttATTTTTTTAAATTAACAAAT‑‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                      <  2:5194082/128‑1 (MQ=255)
                                                                                   ttttttATTTTTTTAAAATAACAAAT‑‑AAAAAAAAAAAAATACAC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                         <  1:1053686/128‑1 (MQ=255)
                                                                                     ttttttttttttttATTAAAAAAT‑‑AAAAAAAAAA‑AAAATCCACTAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                       <  1:5511926/128‑1 (MQ=255)
                                                                                     ttttATTTTTTTATAATTAAAAAA‑‑AAAAAAAAAAAAAACCCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                       <  1:3488936/128‑1 (MQ=255)
                                                                                        ttttttttTATCATCACAAAA‑‑TAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:374226/126‑1 (MQ=255)
                                                                                          ttttttTATATTAAAAAAA‑‑AAAAAAAAAAAAAAAACCA‑‑TAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                 <  1:3625839/128‑1 (MQ=255)
                                                                                           ttttttATCATAAAAAAT‑‑AAAAAAAAAAAAAT‑CCCTTTT‑‑AAAAT‑TAAAAAAAAAAAAAAAAAAACTTAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  2:798671/125‑1 (MQ=255)
                                                                                             ttttatataaaaaaaT‑‑AAAAAAAAAAAAATGCC‑‑ATTATAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  1:4319261/116‑1 (MQ=255)
                                                                                              tttttttttaaaaaa‑‑aaaaaaaaaaCAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:4061998/117‑1 (MQ=255)
                                                                                              tttATATTAAAAAAA‑‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:5630837/128‑1 (MQ=255)
                                                                                               tttttttaaaaaaT‑‑AAAAAAAAAAAAATTACATTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:5378434/118‑1 (MQ=255)
                                                                                               ttATATTAAAAAAA‑‑AAAAAAAAAAAAATACAA‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:634162/128‑1 (MQ=255)
                                                                                                tATCTTCACAAAT‑‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAACTAAATTTAATATAAATAAAAATTAAACCACATTTTATTTTTAAAATaaaaatttg                           >  1:617950/1‑121 (MQ=255)
                                                                                                  tctaaacaAAT‑‑AAAAAAAAAACAATACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                         <  1:2929285/123‑1 (MQ=255)
                                                                                                  tattaacaAAA‑‑AAAAAAAAAAAAATACACTTT‑‑‑AAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                        <  1:5726635/123‑1 (MQ=255)
                                                                                                      aaaaaaT‑‑AAAAAAAAAAAAATACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                     <  1:5851251/125‑1 (MQ=255)
                                                                                                       tcaAAT‑‑AAAAAAAAAAAAAAACAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                    <  1:2193543/127‑1 (MQ=255)
                                                                                                         aaaa‑‑aaaaaaaaaaaaaaaaCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                    <  1:5434052/128‑1 (MQ=255)
                                                                                                            ataaaaaaaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAAAAACAAACAAAATGAATTAAAATTCCCAAATAAACAAAATTTTATTTTAAAAAAAAAAAATTAACaaataaaat                >  2:5296926/4‑120 (MQ=255)
                                                                                                             aaaaaaaaaaaaaaATACCC‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                 <  1:5994530/126‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaaATCCCCTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAATATCAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata               <  1:6027720/127‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaaATCCCC‑‑TTAAAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata               <  1:1264875/127‑1 (MQ=255)
                                                                                                               aaaaaaaaaaaaaaCACC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc             <  2:1513772/128‑1 (MQ=255)
                                                                                                                                 |                                                                                                                           
AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑