Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,3030CA33.4% 4331.2 / inf 2468intergenic (+267/‑275)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base C (517/1063);  new base A (665/127);  total (1277/1191)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2496 total aligned reads displayed.

CTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGT‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430
                                                                                                                                       |                                                                                                                                 
    aaattttttattttttTATTTTTTTTTTTTATTTAAA‑TTTTTAAAAAATTAATTTTAAATTTT‑TAAAAATA‑TC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                                                                                 <  1:3330868/118‑1 (MQ=255)
     aaaattatGTTTTTTTATATTTTTTTTTTATGTAAATTTTTAAAAAAATTAATTTTAA‑TTTT‑AAAAAA‑A‑TT‑CTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                                                                                <  1:3444575/125‑1 (MQ=255)
          tttCTTTTTATTTATTTTTTTTATATGCAAA‑TTTTTAAAAAAATAATTTTAAATTTT‑AAAAAATT‑TC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑Tc                                                                                                                          <  2:4762492/126‑1 (MQ=255)
           attttttttGTTATTTTTTTTTTATTAAAA‑TTTTTTAAAAATTAATTTTAAATTGT‑TAAAAATA‑TC‑TTTTTTTTTTTTTTTTTAT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑Tc                                                                                                                          <  1:4864841/125‑1 (MQ=255)
              tttttAGATATTTTTTTTAAATTCAAA‑TTTTTAAAAAATTAATTTTTAATTGT‑AAAAAATT‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATTTAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTaaa                                                                                                                      <  2:5129101/128‑1 (MQ=255)
               ttttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATTTAAATAAAAATTTTATTAATTTTTTTTTATAATTA‑TATaaaa                                                                                                                     >  1:1001558/1‑128 (MQ=255)
                tttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTTAATAATGTAAATAAAATTTTTAGTTATTTTTTTGTATAATTA‑taaaaa                                                                                                                      >  2:5271217/1‑123 (MQ=255)
                  tAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATTTAAATATAAATTTTATTTATTTTTTTTTATAATTA‑TATaaaaaaa                                                                                                                  >  1:2085497/1‑128 (MQ=255)
                    tatatTTTTTTTTTATTATAA‑TTTTTTAAAAATTTATTTTAAATTTT‑TAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAg                                                                                                               <  1:2957505/127‑1 (MQ=255)
                       atTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑AAAATTAAAAATTAAATTTTAGTTTTTTTTTTTTATAAGTA‑TATAAAAAAATaaaa                                                                                                             >  2:4347075/1‑128 (MQ=255)
                        ttttttttATTTTCAAA‑TTTTTAAAAAATTAATTTTAAATTTT‑AAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAg                                                                                                           <  1:409203/128‑1 (MQ=255)
                         tttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATAAAAATTTTAATTTTTTTTTTTTAAAATTA‑TAAAAAAAAAAAAAAAg                                                                                                           >  2:6476323/1‑128 (MQ=255)
                          ttttttttttttaaa‑TTTTTAAAAAATTTATTTTAAATTTT‑TAAAAATT‑TT‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAg                                                                                                           <  2:6350705/116‑1 (MQ=255)
                          ttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GCTTTTTTTTTTTTTTTTTTTT‑TTTATTTAAAAATAAATTTTATTTTTTTTTTTTTAAAATTA‑TAaaaaaaaaaaaaaa                                                                                                            >  2:4237980/1‑128 (MQ=255)
                          ttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATATTGGAAATATAAATTTTAGTTATTTTTTTTTATATTTA‑TATaaaaaatattaaagt                                                                                                          >  1:5790234/1‑119 (MQ=255)
                           tttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATGTAAATATAAATTTTAGGTTTTTTTTTGTATAATTA‑TATAAAAAAATAGAAAGTaa                                                                                                        >  1:6551115/1‑128 (MQ=255)
                             tGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑AAAATGGAAAAATAAATTTTATTTATTTTTTTTTCTAATTA‑TAAAAAAAAATAAAAAGTaaa                                                                                                       >  2:3442602/1‑128 (MQ=255)
                               tataTGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑AAAATTTAAAT‑TAAAATTTATTTTTTTTTTTTTTTTATTT‑TTAAAAAAAATTAAAATGaaaaaa                                                                                                    >  1:2804995/1‑128 (MQ=255)
                                 tatGTAAA‑TTTTTAAAAAATTAATTTTCACTTGT‑TAAAAAAA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAat                                                                                                   <  1:6131912/128‑1 (MQ=255)
                                 tatGCAAA‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGTTATTTTTTTTTATAATTA‑AATAAAAAAATTAAAAGCAAAAAaaat                                                                                                 >  2:6713505/1‑128 (MQ=255)
                                    tccaa‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAAATG‑GT‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAata                                                                                                  <  2:6134835/125‑1 (MQ=255)
                                      aaa‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATTTAAAAATAAATTTTTTGTATTTTGTTGAATAATTA‑ACAAAAAAAATATAATGAAAAAAATAtttt                                                                                              >  1:3625703/1‑126 (MQ=255)
                                        a‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTT‑ATAATTTAAATATAAATTTTATGTTTTTTTTTTTATAATTT‑TATAAAAAATTAAAATTTaaaaaaatttttt                                                                                             >  1:1478022/1‑121 (MQ=255)
                                        a‑TTTTTAAAAAATTAATTTGAACTTGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATGTAAATATAAATTTTAGGTTTTTTGTTTTATAATAT‑TATAAAAAAATATAAAGTAAAAAATATTTTTaa                                                                                           >  1:716589/1‑128 (MQ=255)
                                           tttttaaaaattaattTTTAATTTT‑AAAAAATATTT‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                                                                            <  2:858003/120‑1 (MQ=255)
                                             ttaaaatattaattTGAACTTGT‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑‑‑TAATGATATAAAAAATTTTAGTTATAGTGTTGTCTAACTC‑AGAAAAAAATTTTAAAGGAAAAATTTTTGTTataatt                                                                                       >  2:334477/8‑126 (MQ=255)
                                                 aaaattatttTTAAATTTT‑AAAAAATA‑G‑‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                                                                                   <  2:1609866/126‑1 (MQ=255)
                                                   aattaattTTAAATTTT‑AAAAAATA‑‑‑‑TTGTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACt                                                                                 <  1:602464/128‑1 (MQ=255)
                                                   aattaattTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGTAATTATAAATTTTATGTATTTTTTTGTCTAATTA‑TGTAAAAAATTTGAAATGAAAAAATATTTTTAAAATTAATaa                                                                                  >  1:2334629/1‑127 (MQ=255)
                                                   aattaattTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑AAAATTTAAAAAAAAATTTTAGTTATTTTTTTTAATAATTA‑AATAAAAAAATAAAAAGTAAAAAAAATTTTTaaaaaaaaaaa                                                                                  >  2:5989507/1‑121 (MQ=255)
                                                    attaattTGAACTTGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATTTAATTATAAATTTTAGTTATTTTGTTTTATATTTA‑TAAAAAAAAATAGATATTAAAAAATATTTTTAAAAGTAATACT‑a                                                                               >  1:2568540/1‑128 (MQ=255)
                                                     ttaattTGAACTTGT‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTT‑ATAATTGAAATATAAATTTTAGTTATTTTGTTGTGAAAGTA‑TCTAAAAAAAAAGAAATTAAAAAATTTTTATAAAATTAATaat                                                                                 >  1:1121113/1‑126 (MQ=255)
                                                     ttaattTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGTAATTTTAAATTTTTGGTTTTTTTTTTTATAATTA‑TATAAAAAAATATAAAGTAAAAATTTTTTTTAAAATTTataat‑a                                                                               >  1:5692365/1‑128 (MQ=255)
                                                     ttaattTGAACTTGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATGTAAATATAAATTTTAGGTATTTTTTTGTATAAGTA‑TATAAAAAAATATAAAGGAAAAAATATTGTTAAAAGTTATACT‑aa                                                                              >  1:3741305/1‑128 (MQ=255)
                                                     ttaattTGAACTTGT‑AAAAAATA‑GC‑‑‑‑TTTTTTTTTTTTTTTT‑ATAATGGAAAATTAAATTTTTGTTATTTTTTTTTATAATTA‑TATAAAAAAATAGAAAGGAAAAAATATTGTTAAAATTAATAAT‑aaa                                                                             >  1:5358119/1‑128 (MQ=255)
                                                      taattTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGTAAATATAAATTTTAGTTATTTTTTTGTATAATTA‑TATAAAAAAAAAAAAATAAAAAAATTTTTTAAAAATTAAAAAT‑aa                                                                              >  2:5502561/1‑128 (MQ=255)
                                                        attTGAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAATTATAAATTTTAGGTTTTTTTTTGTCTAATTA‑AGTAAAAAAATTGAATGTAAAAAATATTTTTAAAATTATTACT‑aaaa                                                                            >  1:4440992/1‑128 (MQ=255)
                                                        attTGAACTTGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTTTTTTAAAAGTA‑TCTAAAAAAATAGAAAAGAAAAAAAATTTTTAAAAGTAATAAA‑AAAat                                                                           >  2:486696/1‑128 (MQ=255)
                                                         tttGAACTTGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATTTAAATATAAATTTTTTGTTTTTTTTTTTATAATTA‑TATAAAAAAATATAAAGTAAAAAATTTTTTTAAATGTAAAAAT‑AAAttt                                                                          >  1:223806/1‑128 (MQ=255)
                                                            gAACTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑AAATTTTAAATATAAATTTTTGTTTTTTTGTTTTATAATTA‑TATAAAAAAATATAAAGTTAAAAATATTTTTAAAATTAATAAT‑AAAattat                                                                        >  1:43090/1‑128 (MQ=255)
                                                             aaCTTGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGTAAATATAAATTTTAGGTTTTTTTTTGTATAATTA‑AATAAAAAAAATAAAATTAAAAAAAATTTTTAAATTTTATAAT‑AAAattatt                                                                       >  2:733608/1‑128 (MQ=255)
                                                              aattGT‑TAAAATTA‑G‑‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTAttt                                                                      <  1:2662016/126‑1 (MQ=255)
                                                                ttGT‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATGGAAATAAAAATTTTACGTTTTTTTTTGTATAAGTA‑TATAAAAAAAAATAAAGGAAAAAATTTTTTTAAAATTAATAAA‑AAAATTATTTatt                                                                   >  2:1345235/1‑126 (MQ=255)
                                                                 tGT‑AAAAAATA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTA‑TATAAAAAAATAGAAAGGAAAAAATATTTTTAAAAGTAATACT‑AAAATTTTTTAAt                                                                   >  1:5465103/1‑128 (MQ=255)
                                                                   t‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTT‑‑‑TAATTTAAATATAAATTTTATGTATTTTTTTGAAAAATTA‑TAAAAAAAAAAATAAATGAAAAAATATTTTTAAAATAAATAAA‑AAAATTATTTAAtttt                                                                >  2:2680457/1‑128 (MQ=255)
                                                                   t‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATTTAAAAATAAATTTTAGGTATTTTTTTTTATATTTT‑TATAAAAAATTATAAAGTAAAAAATTTTTTTAAAATTAATTCT‑AAATATATTTAAtttt                                                                >  1:3065513/1‑128 (MQ=255)
                                                                   t‑AAAAAATA‑GC‑‑‑TTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTTTTGTCTAATTA‑TCTAAAAAAATATAAAGGAAAAAATATTTTTAAAAGTAATAAT‑AAAATTATTTAATGtt                                                                >  1:2446904/1‑128 (MQ=255)
                                                                        aaaTA‑GC‑TTTTTTTTTTTTTTTTTTT‑‑TAATGGAATTATAAATTTTAGGTATTTTGTTTTCTAATTA‑GATAAAAAAATTTAAAGGAAAATATATTTTTTAAAGTAATATA‑AAATTTATTTAATGttatt                                                             >  1:6816585/1‑126 (MQ=255)
                                                                        aaaTA‑GC‑‑TTTTTTTTTTTTTTTTTT‑ATAATGTAAAAAAAAATTTTAGGTATTTTTTTTTGAAATTT‑TATAAAAAAATATAAAGGAAAAAATATTTTTAAAATTAATAAT‑AAAATTTTTTATTTttaat                                                             >  1:943459/1‑128 (MQ=255)
                                                                          aTA‑GC‑ATTTTTTTTTTTTTTTTTT‑TAAATGGAAAAAAAAATTTTAGGT‑TTTTTTTTTAAAAATATTGAAAAAAAATTAAAAATAAAAAAAATTTTTAAAAATAAAAATAAAAATTATTATATTttaat                                                             >  2:4602045/1‑128 (MQ=255)
                                                                            tttttttttttttttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGttaatt                                                            <  2:1060670/123‑1 (MQ=255)
                                                                            aaatagcttttttttttttttttt‑ATAATGGAAATAAAAATTTTAGGTTTTTTTTTTTGTAATTA‑TCCAAAAAAATATAATGTAAAAAATATTTTTAAAATTAATAAT‑AAAAATATTTAATTtaaatt                                                            >  1:669337/8‑128 (MQ=255)
                                                                             ttttttttttttttttttttttt‑ATAATGGTAATATAAATTTTATTTATTTTGTTTTATAATTA‑TATAAAAAAATAGAAATGAAAAAATATTTTTAAAAGTAATACT‑AAAATTATTTAATGttaatta                                                           <  1:1567262/124‑1 (MQ=255)
                                                                             atttttttttttttttttttttt‑ATAATTGAAATATAAATTTTAGTTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGttaatta                                                           <  1:3198014/124‑1 (MQ=255)
                                                                             atagtattttttttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGttaatta                                                           <  1:1721882/122‑1 (MQ=255)
                                                                             aattttttttttttttttttttt‑ATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGttaatta                                                           <  1:1815079/124‑1 (MQ=255)
                                                                             aattttttttttttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGttaatta                                                           <  1:3970553/124‑1 (MQ=255)
                                                                              tagctttttttttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAATTA‑TATAAATAAATATAAAGTAAAAAATTTTTTTAAAAGTAATAAT‑AAAATTATTTAATTttatttaa                                                          >  1:1288194/5‑128 (MQ=255)
                                                                               agctttttttttttttttttt‑ATAATGGAATTTAAAATTTTAGTTTTTTTTTTGTATAAGTT‑TATAAAAAAATATAAATTAAAAAATTTTTTTAATTTTAAAAAA‑AAATTTTTTTAAT‑TTTATTaaaa                                                        >  1:4594187/4‑128 (MQ=255)
                                                                                agcttttttttttttttttt‑ATAATTTAAATATAAATTTTTGTTATTTTTTTTTATAATTT‑TAAAAAAAAATAAAAAGTAAAAAAAATTTTTAAATTAAAAAAT‑AAAATTTTTAATTTTTAATTaaaa                                                        >  2:2411923/4‑128 (MQ=255)
                                                                                 agctttttttttttttttt‑ATAATGTAAAAAAAAATTTTATGTAATTTGTTGTATAAGTA‑AAAAAAAAAATAAAAAGAAAAAAATATTTTTAAAATAAATTAT‑AAAATTATTTAATTTTAATTaaaaa                                                       >  2:4118252/4‑127 (MQ=255)
                                                                                  tttttttttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACt                                                      <  2:2518113/128‑1 (MQ=255)
                                                                                  cttttttttttttttttt‑AAAATGGAAATATAAATTTTAGGTATTTTTTTTTAAAAGTA‑TCTAAAAAAATATAAAGTAAAAAATTTTTTTAAATTTATTAAT‑AAAATTTTTTAATTTTAATTaaaaat                                                      >  1:5897158/2‑126 (MQ=255)
                                                                                   ttttttttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTTTTGTATAAGTT‑TATAAAAAAATATAAAGTAAAAAATATTTTTAAATTTAATAAT‑AAAATTATTTAATTTTAATTAAAAAtt                                                     >  1:196779/1‑128 (MQ=255)
                                                                                        tttttttttttt‑ATAATGTAAATATAAATTTTATTTATTTTGTTGTATAAGTA‑TCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTtaaata                                                <  2:3106716/128‑1 (MQ=255)
                                                                                        tttttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTtaaata                                                <  2:2323447/128‑1 (MQ=255)
                                                                                           ttttttttt‑ATAATGGTAATTTAAATTTTATGTATTTTGTTGGCTAATTA‑ACTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATaaaa                                             <  2:5737634/128‑1 (MQ=255)
                                                                                           ttttttttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATaaaa                                             <  2:6590256/128‑1 (MQ=255)
                                                                                                tttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATaa                                        <  2:5624945/128‑1 (MQ=255)
                                                                                                tttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATaa                                        <  2:1219680/128‑1 (MQ=255)
                                                                                                 ttt‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATaaa                                       <  1:5269362/128‑1 (MQ=255)
                                                                                                   t‑ataATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAAt                                     <  1:5569760/128‑1 (MQ=255)
                                                                                                          ggATATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATtaataa                               <  2:3825997/128‑1 (MQ=255)
                                                                                                           gAAATATAAATTTTATTTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  1:5017791/128‑1 (MQ=255)
                                                                                                           gAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATaaa                              <  2:6827088/128‑1 (MQ=255)
                                                                                                            aaaTATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAAT‑AAAATTATTTAATTTTAATTAAAACTTAAATAAAACATAAAATTAATaaaa                             >  1:627859/1‑128 (MQ=255)
                                                                                                             attataAATTTTAGGTATTTTGTTTTCTAAGGA‑TCTAAAAAAAGAGAAAGGATAAAATATAGTTAACAGAAATAAT‑AAAATTATTTAAATTTAATTAAAACATAAATAAAACATAAAATTAATacaaa                            >  2:2231897/3‑128 (MQ=255)
                                                                                                              atatAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAAt                           <  2:4465455/128‑1 (MQ=255)
                                                                                                              atatAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAAt                           <  2:5370004/128‑1 (MQ=255)
                                                                                                                ataAATTTTAGTTATTTTGTTGTATAAGTA‑TATAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAg                         <  2:5030760/128‑1 (MQ=255)
                                                                                                                   aaTTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      <  2:3926888/128‑1 (MQ=255)
                                                                                                                   aaTTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGttt                      >  2:201132/1‑128 (MQ=255)
                                                                                                                    aTTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTtta                     <  2:2104867/128‑1 (MQ=255)
                                                                                                                     ttttAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                    >  2:6234756/1‑128 (MQ=255)
                                                                                                                     ttttAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttat                    <  1:831596/128‑1 (MQ=255)
                                                                                                                      tttttgTATTTTGTTGTATAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   <  2:2822179/123‑1 (MQ=255)
                                                                                                                      tttAGGTTTTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATAAT‑AAAATTATTTAATGTTAATTAAAACTTAATTAAAACATAAAATTAATAAAAATAGTttatt                   <  2:3220195/128‑1 (MQ=255)
                                                                                                                      tttAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTttatt                   >  2:1897809/1‑128 (MQ=255)
                                                                                                                        tAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  1:385258/1‑128 (MQ=255)
                                                                                                                        tAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaa                 >  2:5857600/1‑128 (MQ=255)
                                                                                                                         aGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTaaa                >  1:1395402/1‑128 (MQ=255)
                                                                                                                              ttttGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAt           >  1:5133691/1‑128 (MQ=255)
                                                                                                                               tttGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGTAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          <  1:4696873/128‑1 (MQ=255)
                                                                                                                               tttGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTTTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          >  2:3692119/1‑128 (MQ=255)
                                                                                                                               tttGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAtt          >  1:6431569/1‑128 (MQ=255)
                                                                                                                                ttgtttTCTAAGTA‑TATAAAAAAATAGAAATGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         <  1:4192074/128‑1 (MQ=255)
                                                                                                                                ttgttgTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAAttt         >  2:3541555/1‑128 (MQ=255)
                                                                                                                                  gttgtATAAGTA‑TATAAAAAAATAGAAAGGAAAAAATATTGTTAATAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCg       <  2:2990635/128‑1 (MQ=255)
                                                                                                                                   ttgtCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGt      <  2:1749782/128‑1 (MQ=255)
                                                                                                                                       cTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGa  >  2:1466199/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                 
CTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGT‑AAAAAATA‑GC‑TTTTTTTTTTTTTTTTTTT‑ATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTA‑TCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACT‑AAAATTATTTAATGTTAATTAAAACTTAAATAAAACATAAAATTAATAAAAATAGTTTATTAAACTAATTTCGTTTGA  >  CP016816/165173‑165430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑