Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4870T.38.4% 135.6 / 189.0 173intergenic (+265/‑410)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (39/51);  new base . (16/40);  total (67/106)
Fisher's exact test for biased strand distribution p-value = 8.15e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.48e-01

Only 100 of 181 total aligned reads displayed.

TAATAGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202371‑202612
                                                                                                                       |                                                                                                                                 
taataTACTTAAGGTTAATTAAAAAAACAAAAAA‑ATAAAAAATAAAATAAATTACAACCTCGTTATC‑TATTTTTTTATTTTTTTATCTTAACAAAA‑AAAAAAAAAACAATCCCC‑‑ttaaa‑‑aatt‑aaaaa                                                                                                                   <  2:274761/128‑1 (MQ=255)
  ataGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTAATC‑TATTTATTTATTTCTTTATATTCACAAAT‑AAAAAAAAAAAAAAACAC‑‑taaaa‑‑aaat‑aaaaaaa                                                                                                                 >  1:350486/1‑128 (MQ=255)
   taGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑‑AATT‑aaaaaaaa                                                                                                                >  2:1680811/1‑128 (MQ=255)
    atagTTAAGGTTAATTAAAATACCAAAAAA‑TTAATAAATCTTAAAATGTATAACCTCGTGATC‑TATTTTTTTAATTGTTTATCTTCAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑a                                                                                                              <  2:1371676/126‑1 (MQ=255)
      agTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaa                                                                                                            >  2:456729/1‑128 (MQ=255)
       ttttattttaattaaAAAAAAAAAAAA‑TTAATAATTATTATAAATTTTATCCTCGTGTTT‑TATTTTTTTTTTTTTTTATATTCACAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AAAT‑aaaaaaaa‑aaaa                                                                                                           <  1:1646678/121‑1 (MQ=255)
       gTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATAAC‑‑AATAAA‑‑AAAT‑aaaaaaaa‑aaaa                                                                                                           >  2:1843420/1‑128 (MQ=255)
       gTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaa                                                                                                           >  1:1666529/1‑128 (MQ=255)
        ttatagTTATTTAAATTAACATAAAA‑TTAAAAATTCATAAAATTTACTACCTCCTGTTA‑TATATTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaa                                                                                                          <  2:1014160/123‑1 (MQ=255)
        ttAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACAAC‑‑TTAAA‑‑AAAT‑aaaaaaaa‑aaaa                                                                                                           >  2:172456/1‑128 (MQ=255)
        ttAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAA‑‑AAAT‑aaaaaaaa‑aaaaa                                                                                                          >  1:1262028/1‑128 (MQ=255)
         taattttaattaaAAAAACAAAAAA‑TTAAAAAATATAAAAAATTATATACTAGTTATT‑TATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaa                                                                                                         <  2:1157315/123‑1 (MQ=255)
         tAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑AATAAA‑‑AATT‑aaaaaaaa‑aaaaaa                                                                                                         >  1:929048/1‑128 (MQ=255)
         tAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaa                                                                                                        >  2:1586800/1‑128 (MQ=255)
          aatgTTAATTAAAATACAATAAAT‑TTAATAATTCTTATAATGTATATCCTCGTTTTT‑TATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaa                                                                                                        <  1:1685004/125‑1 (MQ=255)
          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATATATTTATTTGTTAATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑AAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaa                                                                                                       >  2:1491770/1‑128 (MQ=255)
          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCAAT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaa                                                                                                       >  1:430000/1‑128 (MQ=255)
          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAATCAC‑‑CTAAA‑‑AAAT‑taaaaaaa‑aaaaaaa                                                                                                        >  1:703673/1‑128 (MQ=255)
          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAAAGTAGATCATCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TAAAA‑‑AAAT‑aaaaaaaa‑aaaaaaa                                                                                                        >  1:1516303/1‑128 (MQ=255)
           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑AATAAA‑‑AATT‑aaaaaaaa‑aaaaaaaa                                                                                                       >  1:227837/1‑128 (MQ=255)
           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAACAA‑‑ACAAATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaa                                                                                                       >  1:1372762/1‑128 (MQ=255)
           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATACTCTTGATC‑TATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaa                                                                                                       >  1:1156134/1‑128 (MQ=255)
            ggTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaa                                                                                                     >  1:840035/1‑128 (MQ=255)
            ggTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAAT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaaac                                                                                                     >  2:1285010/1‑127 (MQ=255)
             ttactataaAATACCAAAAAA‑TTTATAAATGTTATTATCTCTCTCCCCG‑GTTCTTATTTTTTTTATTTTTTTTCTTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaa                                                                                                     <  1:1011096/122‑1 (MQ=255)
             gTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaa                                                                                                     >  1:247072/1‑128 (MQ=255)
              ttttataaAATAACATAAAT‑TTATAAATTCTTATAAAGTATATCCTTGTGATT‑TATTTTTTTTTTTTTTTTAATTTACAAAA‑AAAAAAAAAAAAATCCCCTTT‑‑AA‑‑AATT‑aaaaaaaa‑aaaaaaaaact                                                                                                    <  1:1374934/123‑3 (MQ=255)
              ttaattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaa                                                                                                    >  2:1815945/1‑128 (MQ=255)
              ttaattaaAATAACATAAACATTATTATTTATTTTATTTTTGAT‑ATCTTGTTT‑TATTTTTTTATTTGTTTTTTTTTAAAAAA‑AAAAAAAAAACAAACCCCTTATAAA‑‑TTAa‑aaaaaaaa‑aaaaaaaaa                                                                                                      <  2:1640717/128‑1 (MQ=255)
              ttaattaaAAAAAAATAAAA‑TAAATAAATTTTATAAATTATATACACGTGTTT‑TATTTTTTTTTTTTTTTAAATTAACAAAA‑AAAAAAAAAAAAAATCCC‑CTTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaa                                                                                                     <  2:1645825/128‑1 (MQ=255)
               taattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACCTT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                  >  1:610438/1‑128 (MQ=255)
               taattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑‑TAAA‑‑AAAT‑taaaaaaa‑aaaaaaaaaaaaa                                                                                                  >  1:416823/1‑128 (MQ=255)
               taattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                   >  2:1561882/1‑128 (MQ=255)
               taattaaAATACCAAAAAC‑TTAATAATTATTATAATGTAGATCCTCTTGATC‑TATTTTATTATATTATTATCTTAAAAAAT‑AAAAAAAAAAAAATAAAC‑‑TTAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                   >  2:438691/1‑128 (MQ=255)
               taaataaaATAACATAAAA‑TTTAAAATTTTTATAATGGTCTTCCTCCTGTTG‑ATTTTTTTTTTTTTTTTATCTTAACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                   <  1:204829/128‑1 (MQ=255)
                aattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑Taaa‑aaaaaaaa‑aaaaaaaaaaa                                                                                                    >  1:225618/1‑128 (MQ=255)
                aattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACC‑‑ATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                  >  1:968105/1‑128 (MQ=255)
                aattaaAATACCATAAAC‑TTAAAAATTCTTAAAATGTAGATCCTCGTTATC‑TATTTAATTATATGAATAACTTCACAAAA‑AAAAAAAAAACAAAACC‑‑AAAAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaacaa                                                                                                  >  1:1403072/1‑128 (MQ=255)
                 attaaAATACCATAAAC‑TTAATAATTCTTATAATGTATATCCTCTTGATC‑TATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                 >  2:1179874/1‑127 (MQ=255)
                 attaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAACAATACC‑‑ATAAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                 >  1:559386/1‑127 (MQ=255)
                  ttaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAATAAAAACAATCCCCTTAAAAA‑‑TTAT‑aaaaaaaa‑aaaaaaaaaaata                                                                                                  >  1:1831909/1‑126 (MQ=255)
                    aaaaaaACATAAAA‑ATTATAATTATTATAATTTATATACTTTTGTTA‑TATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                              <  2:1797177/128‑1 (MQ=255)
                    aaaaTACAAAAAAC‑TTATAATTTATTATTAAGAATATCCTCTTGATA‑TATTTTTTTATTTGTTTATAATCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaactaaaaac                                                                                              <  2:631363/128‑9 (MQ=255)
                    aaaaTAACATAAAA‑TTAATAATTAATATAATTTATAACATATTTATA‑TATTTTTTTTTTTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaactaaaaaca                                                                                              <  2:243308/128‑10 (MQ=255)
                     aattACCATAAAA‑TATATAATTATTATAATGTATATCATCTTTATT‑TATTTTTTTATTTTTTATTTTTAAAAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                              <  2:1624467/125‑1 (MQ=255)
                     aaaTACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAT‑‑CCAAATAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                             >  2:219543/1‑123 (MQ=255)
                     aaaTACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCAC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                             >  1:1522230/1‑123 (MQ=255)
                     aaaTAACATAAAA‑TTAAAAATAATTAAAATTTAGAACCTCGTTATC‑TATTTTTTTATTTTTTTAACTTCAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaactaaaaa                                                                                             <  2:234050/128‑8 (MQ=255)
                      aaaaCCAAAAAA‑TTAAAAATATATAAAATTTATATCCTCCGTCTC‑TATTTTTTTTTTTTTTTTTATTTACAAAA‑AAAAAAAAAAAAATTCCCCTT‑‑AA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTaaaa                                                                                            <  2:1198401/125‑1 (MQ=255)
                          aaaaaaaaaaaaataaaTCTTATAAATTATATCATCTTTATA‑TATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAaaacaaa                                                                                       <  2:693429/117‑1 (MQ=255)
                           cATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAACaaaaaaaaaaaaaa                                                                                       >  1:183768/1‑128 (MQ=255)
                             tAAAC‑ATTATAAATTTTTTAATTTTCATACTCGGTATC‑TATTTTTTTATTTTTTTATCTTCAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:1564429/128‑1 (MQ=255)
                             tAAAA‑TTAATAATTCTTATAATTTTTATAAAAGTTATA‑TTTTTTTTTTTTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TTAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                   <  2:232710/128‑1 (MQ=255)
                               aaaatataaaatTATTATAATTTATATCCACGTGTTA‑TATTTTTTTTTTTTTTTATATT‑AAAAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:1739898/119‑1 (MQ=255)
                                aC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑AAAaaacaaacacaat                                                                                 >  1:1768285/1‑123 (MQ=255)
                                 aattAATAAATCTTATAATTTATAACCTAGTTATT‑TATTTTTTTATTTTTTTATTTTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  2:1597478/126‑1 (MQ=255)
                                   ttAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑AAAAAACAAACTATAtta                                                                               >  2:205763/1‑127 (MQ=255)
                                     aataaattataaaaTTTATATCCACGTTTTA‑TATTTTTTTATTTTTTTAACTACAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                            <  2:1666529/116‑1 (MQ=255)
                                                   tttataTCCTCGTTATA‑TATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAA‑AATACCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                            <  2:1670407/123‑1 (MQ=255)
                                                    gtacatacgagTGATA‑TAATTTTTTATTTTTTTATCATAAAAAAA‑AAAAAAAAAACAATCCCC‑‑ATAAA‑‑AAAT‑‑‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                            <  2:1275591/118‑1 (MQ=255)
                                                      atatacTCGTTATA‑TATTTTTTTATTTTTTTATATTTAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                             <  2:523266/123‑1 (MQ=255)
                                                      ataacatagTGATA‑TATTTTTTTATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAATCCCCTTT‑‑‑A‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                           <  2:1522230/120‑1 (MQ=255)
                                                              ttttatttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATCCCATT‑‑‑AA‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:1357327/121‑1 (MQ=255)
                                                               ttatttatttttttttttttttttTATTAAAAAAT‑AAAAAAAAAA‑AATACCCATT‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:956414/120‑1 (MQ=255)
                                                                ttttatATTTTTTTTTTTTTTTATATTTAAAAAT‑AAAAAAAAAAAAAAACACTT‑‑‑AA‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  2:1503473/123‑1 (MQ=255)
                                                                ttaaatatttttttattttttTATAAT‑AAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                <  2:386644/123‑1 (MQ=255)
                                                                taattattttttttATTT‑TTTAAATAAAAAAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  2:1884591/121‑1 (MQ=255)
                                                                attaatatttttttattttttTTTATTAAAAAAA‑AAAAAAAAAAAAAACCAC‑‑ATAAA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  2:919537/123‑1 (MQ=255)
                                                                   c‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAATAA‑‑AAAAAAAAA‑‑ATATTTATTAAAATTACATATTAAAACACATTTTATTTTTa                                            >  2:1526049/1‑128 (MQ=255)
                                                                    tttttttttttttttttTAACTTAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAA‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                                 <  2:1328869/125‑1 (MQ=255)
                                                                    atatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACCCAT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  2:180226/127‑1 (MQ=255)
                                                                     tttttttttatttttttaAATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  1:1843420/126‑1 (MQ=255)
                                                                     tATTTTTTTTTTTTTTTATATTCACAAAA‑AAAAAAAAAACAAACTCATT‑‑‑AA‑‑AAAT‑TTAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAACTTCCCTATTATACCACattttatttt                                              <  2:641055/128‑1 (MQ=255)
                                                                      tttttttttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAAACCCCATAAAAATTAAAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                  <  1:1179874/127‑1 (MQ=255)
                                                                      ttttttttatttttttaTTTTCA‑AAAA‑AAAAAAAAAAAAATACCC‑‑ATAAA‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:1505827/127‑1 (MQ=255)
                                                                       tttttttATTTTTTAATATAAAAAAAA‑AAAAAAAAAAAAAAACC‑‑TTT‑AA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:1656391/128‑1 (MQ=255)
                                                                        ttttttatttttttatAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  2:1885193/128‑1 (MQ=255)
                                                                        ttttttATT‑‑TTTATTATTACAAAA‑AAAAATAAAAAAAAACCC‑TTTAAA‑‑ATAT‑AAAAAAAATAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTa                                            <  2:1299179/128‑1 (MQ=255)
                                                                          ttttATTTTTTTATCTTAAAAAAA‑AAAAAAAAAACAATCCACTT‑‑‑AA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                       <  2:1782623/128‑1 (MQ=255)
                                                                           tttATTTTGTTTTATTCAAAAAT‑AAAAAAAAAAAAAT‑‑ACATTT‑AA‑‑AATT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                        <  1:1705168/128‑1 (MQ=255)
                                                                           tttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAA‑‑TAAAAAAAAAATATTTTTATTAAAAATAAATATTATAAAAAATTTTATTTTTAaaaaaa                                      >  2:111847/1‑128 (MQ=255)
                                                                            ttATTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAAATCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                       <  2:1837148/128‑1 (MQ=255)
                                                                            ttATTTTTTTAACTTAAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:1484980/128‑1 (MQ=255)
                                                                             ttttttttTATCTTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                    <  2:1403072/126‑1 (MQ=255)
                                                                              tttttttTATTTTAAAAAAT‑AAAAAAAAAAAAATTCAATT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACATTTTATTTTTAAAATAAg                                     <  1:1667920/127‑1 (MQ=255)
                                                                              aTTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  2:1699675/128‑1 (MQ=255)
                                                                               ttttttattCTTCA‑AAAT‑AAAAAAAAAATAAATACC‑CTTAAA‑‑AAAT‑‑‑‑AAAAA‑AAAAAAAAAAAAACTATAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                  <  2:1037822/120‑1 (MQ=255)
                                                                                  ttttttaaaaaaaaaa‑aaaaaaaaaaaaATCCC‑‑‑TT‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  1:1022345/116‑1 (MQ=255)
                                                                                   tttATATTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  2:417857/128‑1 (MQ=255)
                                                                                    ttaatttaaaaaaa‑aaaaaaaaaaaaATCCC‑‑TTT‑‑A‑‑AAAT‑T‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                             <  2:510963/118‑1 (MQ=255)
                                                                                    ttaattaaaaaaaa‑aaaaaaaaaaaaATCCC‑‑TTT‑AA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                               <  2:1436132/118‑1 (MQ=255)
                                                                                      atattaaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                              <  1:234450/120‑1 (MQ=255)
                                                                                       ttataaaaaaT‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                             <  2:1763014/121‑1 (MQ=255)
                                                                                          ttaaaaaa‑aaaaaaaaaaaaaaACCCCTTAAAA‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:1589698/124‑1 (MQ=255)
                                                                                           aaaaaaT‑AAAAAAAAAAAAAAAACCA‑‑TAAA‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  2:1950753/125‑1 (MQ=255)
                                                                                            aaaaaa‑aaaaaaaaaaaaATCCCATT‑‑‑AA‑‑AAAT‑T‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATACCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                     <  2:105607/126‑1 (MQ=255)
                                                                                                 aaaaaaaaaaaaCAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                   <  2:1932995/126‑1 (MQ=255)
                                                                                                             cAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAACACAATTTATTAAAATTCACTATTATACCAAATTTTTTTTTTAAAAAAAGATATTTAAATAAAATATAAATAAtatatata      >  1:1915794/1‑128 (MQ=255)
                                                                                                                   aactttAAA‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa     <  2:830069/125‑1 (MQ=255)
                                                                                                                     ctttaaa‑‑attt‑aaaaAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc  <  2:1516303/127‑1 (MQ=255)
                                                                                                                       |                                                                                                                                 
TAATAGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202371‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑