Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8930T.62.2% 166.8 / inf 685intergenic (‑142/+43)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (143/86);  new base . (173/203);  total (317/368)
Fisher's exact test for biased strand distribution p-value = 1.09e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.51e-03

Only 100 of 816 total aligned reads displayed.

AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020
                                                                                                                                    |                                                                                                                                
aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑t                                                                                                                                  >  2:679447/1‑128 (MQ=255)
     atatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑tttttt                                                                                                                             >  2:322379/1‑128 (MQ=255)
      tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑ttttttt                                                                                                                            >  1:966600/1‑128 (MQ=255)
         atatTATTGAAATTAATGATTTATAATAAAAATTAATAATAAATTTAAAACCCAAATTACCCTTTAAATTAAAATAAAATTATATAA‑ATTTAAATTTTTTAAA‑TAAAAATATT‑AC‑AAC‑tttttttttt                                                                                                                         <  1:46040/128‑1 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCATTAAATACAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑tttttttatt                                                                                                                         >  1:1211722/1‑128 (MQ=255)
          tatttttGAAATTAAGGAATTATAAAAAAAAATTATAATAACTGTACAACCCAAATTACCCTTTAAATTTAAAAAAAATTATAAAA‑ATAAAAATTTTTTAAA‑CAAAAATAAT‑AC‑ACC‑ttttttttttt                                                                                                                        <  1:832316/122‑1 (MQ=255)
           atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAA‑tttttttttttt                                                                                                                       >  1:1003099/1‑128 (MQ=255)
            ttAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑tttttattttttt                                                                                                                      >  1:1734534/1‑128 (MQ=255)
                  aaCTTAATGAAGTAAAATAAAAATTAATAAAAAATTTACAACCCAAATTCCCCTTTAAATTCAAATAAAATTATATAA‑AGATAAAATTTTTAAA‑TAAAAATATT‑AC‑AAC‑ttttttttttttttggaac                                                                                                                <  2:544286/128‑6 (MQ=255)
                   acatAAGGATTTAAAATAAAAATTAATAATAACTTTACAAACCAAATTCCCCTTTAAATTAAAATAAAATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑ttttttttttttttggaact                                                                                                               <  1:1517139/125‑7 (MQ=255)
                   aCTTAATGTTGTATAAAAAAAAATAATAATAAATCTACAAACCAAATTACCCTTTAAATTCAAAAAAAAATATATAA‑ATATAAATTTTTTAAA‑TAAAAAAATT‑AC‑AAA‑ttttttttttttttggaact                                                                                                               <  2:1482441/128‑7 (MQ=255)
                   aCTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCACCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTAATAAA‑TAAAAATATT‑AC‑ATC‑tattttttatattttgtaag                                                                                                               >  2:1203664/1‑123 (MQ=255)
                    attaattattaataataAAAATTAATAATAAATTTAAAACCAAAATTCACCTTTAAATTCAAATAAAATTATATAA‑ATATAAATTTTTTAAA‑TAAAAAAATT‑AC‑AAC‑‑ATTTTTTTTTTTTTTGGAACt                                                                                                             <  2:292191/117‑1 (MQ=255)
                     tttatgttttataATAAAAATTTAAAATAACTGTAAAACCAAAATTACCCTTTAAATTAAAATAAAATTTTATAA‑ATTAAAATTTTTTTAA‑TAAAAAAATT‑AA‑AAC‑TTTTTTTTTTTTTTTTGGAACt                                                                                                             <  1:1073468/119‑1 (MQ=255)
                     tttaGGATTTATAATACAAAATAAAAAAAACTTTTCAACCCAAATTTCCCTTTAAATTAAAATTAAAATTTTTAA‑AGATAAATTTTTTTAA‑TAAAAATATT‑AA‑AAA‑TTTTTTTTTTTTTTTTGGAACt                                                                                                             <  1:661496/125‑1 (MQ=255)
                        aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑tttttttttttttttttaaaaaaaa                                                                                                          >  1:633416/1‑119 (MQ=255)
                        aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTgagatagga                                                                                                          >  2:1667344/1‑120 (MQ=255)
                        aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAAATaaaa                                                                                                         >  1:542983/1‑126 (MQ=255)
                          gATTTAAAATACAAATTAATAATAAATTTACAACCCAAATTCCCCTTTAAATTCAAATAAAATTATATAA‑ACATAAAATTTTTAAA‑TAAAAATATT‑AA‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACata                                                                                                       <  2:1622195/128‑1 (MQ=255)
                          gATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑tatattttattttttgaaaaaaaaata                                                                                                        >  2:1422020/1‑116 (MQ=255)
                           aTGTATAATACAAATTAATAATAAATGTAAAACCCAAATACACCTTTAAATTCAAATAAAATTATATAA‑ATATAAATTTTTTAAA‑TAAAAATATT‑AA‑AAC‑TTTTTTTTTTTTTTTTGGAACTAACata                                                                                                       <  2:269037/128‑1 (MQ=255)
                            tGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAAAAAAAAtata                                                                                                     >  1:1892345/1‑128 (MQ=255)
                             gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGTAAATAAAAtata                                                                                                     >  1:20545/1‑128 (MQ=255)
                             gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                                   <  2:880526/128‑1 (MQ=255)
                                     aaaaTTAATAATAACTGTACAAACCAAAATCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAa‑t                                                                                         <  1:1437184/127‑1 (MQ=255)
                                      aaaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAAATTTTTAAA‑GAAAAATATT‑AC‑AAA‑TTTTTTTTTATTTTTTGCAAAAAAAAAATAATTTAAcaa                                                                                            >  2:1028119/1‑126 (MQ=255)
                                       aaTTAATAATAACATTACAAACAAAATTCACATTTAAATTAAAATAACATTATATTA‑ATATTAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAa‑tt                                                                                        <  1:1545292/128‑1 (MQ=255)
                                       aaTTAAAAATAACTGTTAAACACAAATTATCCTATAAATTTTAATAAAATTATATAT‑ATATAAATTTTTTATA‑TAAAAATATT‑TC‑AA‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAa‑tt                                                                                        <  1:493440/128‑1 (MQ=255)
                                        aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGAAAATATCATATAATTTTaaaaat                                                                                          >  1:617675/1‑123 (MQ=255)
                                         ttAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGTAACTAAAATATAATTTTACAAa‑tta                                                                                       >  2:525010/1‑128 (MQ=255)
                                           aataataatTTTAAAAACAAAATT‑CCCTTTAAAATAAAATAAAAATATATAA‑ATTTAAAATTTTTAAA‑TAAAAAAATT‑‑T‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑ttatta                                                                                    <  1:899591/128‑1 (MQ=255)
                                           aaaaataaATTTACAACCCAAATTACCCTTTAAAATAAAATAACATTAATTAA‑AGATAAATTTTTTAAA‑TAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑ttatta                                                                                    <  2:1707240/125‑1 (MQ=255)
                                            ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTATAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTATTTAAGAAAATAACATATAAATATACAAA‑ttatta                                                                                    >  2:791735/1‑128 (MQ=255)
                                             taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AACTTTTTTTTTTTTTTTTTTTAAATAAAATAAAATTTTACAAa‑taatt                                                                                     >  2:401154/1‑128 (MQ=255)
                                             taataaCTGTACAACACAAATTCCCCTTTAAATTCAAATAAAATAATATAA‑ATATAAATTTTTTAAA‑TAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAg                                                                                   <  2:1528807/128‑1 (MQ=255)
                                              aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACACATAATTTTACCAA‑TTATTAGa                                                                                  >  2:1826374/1‑128 (MQ=255)
                                              aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGTAACTAAAATATAATTTTACCAA‑TTATTATaa                                                                                 >  2:1560144/1‑128 (MQ=255)
                                               ataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGTAAATAACATATAATTTAACAAa‑ttataaaaa                                                                                 >  1:425385/1‑123 (MQ=255)
                                               ataaCTGTACAAACCAAATTCCACTTTAAATTCAAATAACATTATATAA‑ATATAAATTTTTTAAA‑TAAAAATATT‑AC‑AAC‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGaatt                                                                               <  1:1598335/128‑1 (MQ=255)
                                                taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGTAAATAAAATAAAATTTTCACAA‑TAAATATaat                                                                                >  1:1348796/1‑128 (MQ=255)
                                                taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAAATAAAATAAAATTTTACCAA‑TTATTATaat                                                                                >  1:222916/1‑128 (MQ=255)
                                                taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGTAAAAAAAATATAATTTTACCAA‑TTATTACaatt                                                                               >  2:601698/1‑128 (MQ=255)
                                                 aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGTAAATAAAATATAATTTAAAAAA‑TTATTAAaat                                                                                >  2:952685/1‑128 (MQ=255)
                                                  aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTATAAAATAAAATATAAATATACAAA‑TTATTATaatt                                                                               >  2:1158239/1‑128 (MQ=255)
                                                   atGTAAAACCCAAATTACACTTTAAATTAAAATAAAATTATATAA‑ATATAAATTTTTTAAA‑TAAAAATATTAAA‑AAT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGaatt                                                                               <  1:401154/127‑1 (MQ=255)
                                                    tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTT‑‑GAACTAACATATAATTTTACAAA‑TTATTATaatttcaa                                                                           >  2:1640673/1‑128 (MQ=255)
                                                    tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑‑TTTTTTTTTTTTTGGAACTAACTTATAATTTTAACAT‑TTATTAGaatttcatt                                                                          >  1:1569605/1‑126 (MQ=255)
                                                    tGTACAAACATAATTAACATTTAAATTAAAATAAAATTATATAA‑AGATAAATTTTTTAAA‑TAAAAAAATT‑A‑‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGaatttca                                                                            <  2:425385/128‑1 (MQ=255)
                                                       aCAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTATGGAAAAAACAAATAATTTTACCAA‑TTATTATaattacaatt                                                                         >  1:1370775/1‑128 (MQ=255)
                                                          aCCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATTTATTTTTACCAA‑TTATTAGAATTTCAATTTcac                                                                     >  1:1800877/1‑128 (MQ=255)
                                                            ccAAATTCCCCTTTAAATTCAAATAACATTATAAAA‑AGATAAAATTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTcaca                                                                    <  2:1891668/128‑1 (MQ=255)
                                                             aaatttcacatttAAATT‑AAATAAAAATTTATAA‑ATATTAATTTTTTTAA‑ATAAAATAAT‑A‑‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGa                                                                  <  1:1839672/118‑1 (MQ=255)
                                                              aaaTTACACTTTAAATTAAAATAAAATTATTTAA‑AGATAAATTTTTTAAA‑TAAAAATATT‑AA‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGAt                                                                 <  2:456161/128‑1 (MQ=255)
                                                               tttattctttttAATTAAAATTAAATTTTTTAA‑ATAAAAATTTTTTTAA‑TTAAAATTTT‑A‑‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGAt                                                                 <  2:1272520/120‑1 (MQ=255)
                                                               aaTTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGTAAATAAAATAAAATTTTACCAA‑TTATTAAAATTTAAATATAACatat                                                                 >  2:1977504/1‑128 (MQ=255)
                                                                   acacTTTAAATTAAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAAAATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAAtt                                                            <  2:769710/125‑1 (MQ=255)
                                                                    cccTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGTAAGTAAAATTTAATTTTACAAA‑TTTTTATTATTTAAATATCACAGTTGTAt                                                             >  1:346411/1‑128 (MQ=255)
                                                                     aatttAAATAAAAATTAAATTTAATAA‑ATTTAAATTTTTTAAA‑TAAAAAAATT‑A‑‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTg                                                           <  2:738015/126‑1 (MQ=255)
                                                                        ttAAATTCAAATAACATTATATAA‑ATATAAATTTTTTAAA‑TAAAAATATT‑AA‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                        <  2:918762/128‑1 (MQ=255)
                                                                         tAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAA‑TTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                       >  2:624027/1‑128 (MQ=255)
                                                                          taaTTTAAATAAAATTATATAA‑ATTTAAATTTTTTAAATTAAAATTTTT‑AA‑AAT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                        <  1:71946/127‑1 (MQ=255)
                                                                          taaTTAAAATAAAATTTTATAA‑ATATAAATTTTTTAAA‑TAAAAATATT‑‑T‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  1:260888/127‑1 (MQ=255)
                                                                          aaaataaaaaaaaaTTATATAA‑ATAAAAATTTTTATAA‑TAAAAATATT‑ACAAAT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGAta                                                        <  1:506471/122‑2 (MQ=255)
                                                                          aaaTTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTT‑TAAATAAAATATAATTTTACCAA‑TTATTAAAATTAAAATTTAACATATTAatttattta                                                      >  1:801996/1‑127 (MQ=255)
                                                                          aaaTTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTT‑TAAATAAAATATAATTTTACAAA‑TTATTATAATTTAAATTTAAAAAATAAATTTAttaa                                                      >  2:697413/1‑126 (MQ=255)
                                                                          aaaTTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAA‑TTATAAGAATTTCAATTTCAAAGATGAATTTATttct                                                     >  2:1394222/1‑128 (MQ=255)
                                                                           atttCAAAAAACA‑TATATAATATATAAATTTTTATAA‑CAAAAATTTT‑AT‑AA‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                    <  1:1415935/126‑1 (MQ=255)
                                                                            aTTCAAATTAAATTATTTAA‑ATTTAAATTTTTTAAA‑GAAAATTATT‑AA‑AA‑‑‑‑ATTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTtcttct                                                  <  2:1732211/128‑1 (MQ=255)
                                                                                  aTAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAA‑TTATTAGAATTTAAATTTCACAGAGTAATTTATTTATTataata                                              >  2:1579671/1‑128 (MQ=255)
                                                                                    aaCATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAAAATATATTTTTACCAA‑TTATTAAATTTTAAATTTAAAAGATGAATTGATTTATTATAATAAtt                                           >  2:367846/1‑128 (MQ=255)
                                                                                      cATTATTAAA‑ATATAAAATTTTTAAA‑TAAAAATATT‑AC‑AAC‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGt                                        <  2:833385/128‑1 (MQ=255)
                                                                                          aaaaaa‑aTATAAATTTTTTAAA‑TAAAAAATAT‑AC‑AA‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                      <  1:366768/124‑1 (MQ=255)
                                                                                            ataA‑AGATAAATTTTTTAAA‑TAAAAAAATT‑AA‑AAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                     <  2:217892/128‑1 (MQ=255)
                                                                                            ataA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGTAAAAAAAATATAATTTTAACAA‑TTATTAAAATTTAAATTTAAAATATGAATTGTTTTATTCTTATAttttttata                                     >  1:1310333/1‑123 (MQ=255)
                                                                                             taA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTACAATTACCCATATGAATTGATTTATTAAAATAATTTTTCtatat                                  >  1:770557/1‑128 (MQ=255)
                                                                                             aataataTAAATTTTTTATA‑TAATAATTTT‑TA‑AAA‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                                     <  2:1859295/122‑1 (MQ=255)
                                                                                              tatatattaaTTTTTTAAA‑TAAAAATATT‑AA‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                   <  1:1276109/120‑1 (MQ=255)
                                                                                              aa‑aGATAAATTTTTTAAA‑TAAAAATATT‑AA‑AA‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                                 <  2:1778219/128‑1 (MQ=255)
                                                                                               a‑aGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGTAA‑GAAAAAAAAATTTTAACAATTTATTAGAATTTCAATTAAAAATTTAAATTTATTTCTAAAAATAATTATtatatata                                 >  1:684977/1‑128 (MQ=255)
                                                                                                  taTAAATTTTTTAAA‑TAAAAATAAT‑A‑‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                               <  2:10884/127‑1 (MQ=255)
                                                                                                   aTAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTATAATTTCAATTTCACAAATTAATTGATTTATTATAAAAATTTTTCTATATAGAtt                             >  1:1116523/1‑127 (MQ=255)
                                                                                                    tAAATTTTTTTAA‑TAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGt                            <  2:129726/128‑1 (MQ=255)
                                                                                                     aaaTTTTTTAAA‑GAAAAATATT‑TA‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtt                           <  1:1868573/128‑1 (MQ=255)
                                                                                                      aaTTTTTTAAA‑GAAAAATATT‑AC‑AAC‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTAAATTTCACAGATAAATTGATTTATTCTAATAATTTGTCTATATAGAtttttt                         >  1:1458093/1‑128 (MQ=255)
                                                                                                          ttttTAA‑TAAAAATTTT‑AT‑AA‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                       <  1:931239/128‑1 (MQ=255)
                                                                                                          ttttAAA‑TAAAAATATTAAA‑AAT‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt                         <  2:65669/128‑1 (MQ=255)
                                                                                                           tttAAA‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATTAATTGATTTCTTCTAATAATTTGTATATATATATGTTTTTta                      >  2:485969/1‑128 (MQ=255)
                                                                                                            ttttaattaaaaTATT‑TT‑TAT‑TTTTTTTTTTTTTTTTGGAACTAATATATAATTTTAATAA‑TTATTAGTATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                       <  1:1192521/120‑1 (MQ=255)
                                                                                                            ttAAA‑GAAAAATATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAA‑TTATTAGAATTTAAATTTCAAATATGAATTTATTTCTTCTAATAATTTTTATATATATATTTTTTTtata                    >  1:1958070/1‑128 (MQ=255)
                                                                                                             taaa‑taaaAATATT‑A‑‑ATA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata                    <  2:1370775/128‑1 (MQ=255)
                                                                                                              aaa‑GAAAAATATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAAAATTTAATTTAACCAA‑TTATTATAATTTCAATTTCAAATATTAATTGATTTGTTATAATAATTTGTATATATATATGTTTTTTatat                   >  2:1454877/1‑128 (MQ=255)
                                                                                                                   aaaaaTATT‑AC‑AAC‑‑‑TTTTTTTTTTTTTTGGAACTAAAATTTAATTTAACCAA‑TTATTAGAATTTCAATTTAAAATATGAATTGATTTATTGTATTAATTTTTATTTATATATGTTTTTTATAACTaaa              >  2:1327339/1‑128 (MQ=255)
                                                                                                                    aaaaTATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACATATGAATTGATTTATTATAATAATTTGTATATATAAATGTTTTTTATATATaa               >  1:1645983/1‑128 (MQ=255)
                                                                                                                     taaTATT‑AA‑ATC‑TTTTTTTTTTTTTTTT‑GAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAt             <  1:292134/127‑1 (MQ=255)
                                                                                                                      aaTATT‑AC‑AAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATc            <  1:1677822/128‑1 (MQ=255)
                                                                                                                        aatatttaatttttttttttatttttttGGAAATAACATATATTTTTACCAA‑TTATTAGAATTTCATTTTCACAGATGAATTGATTTCTTATAATAATTTGTCTATATAGATGTTTTTTATATCTaaa              <  2:1937355/116‑1 (MQ=255)
                                                                                                                                taatttttttttttttttttTGAACTAATATATAATTTTACAAT‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGAt      <  1:1158239/124‑1 (MQ=255)
                                                                                                                                 aC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATct    <  2:1600126/128‑1 (MQ=255)
                                                                                                                                   tttttttttttttttttGGAAATAAAAATTAATTTTACAAA‑TTATTTAAATTTAAATTTAAAAAAAGAATTTTTTTATTCTAATAATTTTTCTAAATAAATTTTTTTTATATATTAATCAATGaatat   >  1:1707368/2‑124 (MQ=255)
                                                                                                                                    ttttttttttttttttGGAACTAACATATAATTTTAACAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATcttt  <  2:111987/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                
AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAA‑AGATAAATTTTTTAAA‑GAAAAATATT‑AC‑AAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAA‑TTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑