Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681625,2040TC67.8% 1041.8 / inf 760H247R (CAC→CGC) JCVSYN2_00095ABC transporter ATP‑binding protein
Reads supporting (aligned to +/- strand):  ref base T (128/110);  new base C (269/233);  total (403/357)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 771 total aligned reads displayed.

TTCAAGAACTTTACGTCCCATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCAGTTAAATTAGTTAA  >  CP016816/25077‑25331
                                                                                                                               |                                                                                                                               
        cTTTACGTCCCATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGTatat                                                                                                                         >  1:643600/1‑128 (MQ=255)
        cTTTACGTCCCATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGatat                                                                                                                         <  2:1157747/128‑1 (MQ=255)
          ttACGTCCCAATTCAGCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATAttt                                                                                                                       <  1:1888875/128‑1 (MQ=255)
          atACGTCCCATATCATCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATAttt                                                                                                                       <  1:1668416/127‑1 (MQ=255)
           tACGTCCCATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGAGATTTGGTGAGGATATTTa                                                                                                                      >  1:816538/1‑128 (MQ=255)
           tACGTCCCATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTa                                                                                                                      <  1:202646/128‑1 (MQ=255)
            aCGTCCCATTTCTTGTTCTCATGCCCCTGTTGGTACATCAGCATATAAATTATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTAt                                                                                                                     <  2:779470/128‑1 (MQ=255)
             cGTCCCATTTCTTCATCTAATGCCCCAGGTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACTCGGTGGTGTTGTCCTCCTGACAGTTGGTGAGGAGATTTATg                                                                                                                    >  2:144604/1‑128 (MQ=255)
                cccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCag                                                                                                                 >  2:741285/1‑127 (MQ=255)
                 ccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAATTATAAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCATGACATTTGGCGAGGATATTTATGCAtt                                                                                                                >  1:1477710/1‑128 (MQ=255)
                 ccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGCGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGCCATTTGGCGAGGATATATATGCCtt                                                                                                                >  1:728976/1‑128 (MQ=255)
                 ccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCAtt                                                                                                                >  2:25369/1‑128 (MQ=255)
                 ccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCAtt                                                                                                                >  2:3587/1‑128 (MQ=255)
                 ccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATAGAAACACGTTGTTGTTGTCCTCCTTACAGTTGGTGAGGAGATTTAAGCAtt                                                                                                                >  1:1161999/1‑128 (MQ=255)
                 ccATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGATAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCAtt                                                                                                                >  1:1787418/1‑128 (MQ=255)
                     ttcttcATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGAt                                                                                                            <  1:999961/128‑1 (MQ=255)
                       cttcATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCt                                                                                                          >  2:651096/1‑128 (MQ=255)
                        ttcATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCtt                                                                                                         >  1:1957740/1‑128 (MQ=255)
                        ttcATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTACTGACATTAGGCGAGGATATTTATGCATTTTATCtt                                                                                                         >  2:269811/1‑128 (MQ=255)
                          cATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTc                                                                                                       >  2:1707043/1‑128 (MQ=255)
                           aTCTAATGCCCCAGTTTGTTCATCAGCATATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGTTATTTATGCATTTGATCTTTCa                                                                                                      <  1:1204067/128‑1 (MQ=255)
                           aTCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCa                                                                                                      >  1:959740/1‑128 (MQ=255)
                            tCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCAt                                                                                                     >  1:1285639/1‑128 (MQ=255)
                              tAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATAc                                                                                                   <  2:39000/128‑1 (MQ=255)
                               aaTGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGCAACACGTTGTTTTTGTCATCCTGACATTTGCCGAGGATATTTATGCATTTGATCTTTCATAcc                                                                                                  >  1:1259222/1‑128 (MQ=255)
                               aaTGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCAtt                                                                                                                >  1:397261/1‑114 (MQ=255)
                                  gCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATTCATTTTATATTTGATACCAAt                                                                                               >  1:1332454/1‑128 (MQ=255)
                                     ccAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGt                                                                                            <  1:1621311/128‑1 (MQ=255)
                                      cAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGtt                                                                                           >  1:1828296/1‑128 (MQ=255)
                                      cAGTTGGTTCATCAGCAAATAAAATATCAGGAATTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGAGATTTATGCATATGATCTTTCATACCAATTGtt                                                                                           >  2:458710/1‑128 (MQ=255)
                                         ttGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCa                                                                                        <  2:508768/128‑1 (MQ=255)
                                          tGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCaa                                                                                       >  2:430501/1‑128 (MQ=255)
                                          tGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCaa                                                                                       >  2:1769459/1‑128 (MQ=255)
                                          tGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATGTGGCGAGGATATTTATGCATTTGATCTTTCATACCATTTGGTTCaa                                                                                       >  2:1259698/1‑128 (MQ=255)
                                            gTTCATCAGCAAATAAAAAATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACTTTGTTCTTGTCCTCCTGACATTTGGCGAGGATATTTATGCACTTGATCTTACATCCCAATTGATTCaaaa                                                                                     >  2:1023524/1‑128 (MQ=255)
                                             ttCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCaaaaa                                                                                    >  2:1899449/1‑128 (MQ=255)
                                                 tcaGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTtc                                                                                >  1:445053/1‑128 (MQ=255)
                                                     cAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTtcatca                                                                            >  2:1487857/1‑128 (MQ=255)
                                                      aaataaaataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATA‑TTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAAt                                                                          <  1:1419493/128‑1 (MQ=255)
                                                      aaataaaataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTAGTTGTTGTCCTCATTACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATaaa                                                                           >  1:1001994/1‑128 (MQ=255)
                                                       aataaaataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAAt                                                                          >  1:1070601/1‑128 (MQ=255)
                                                        ataaaatcTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGGTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAAtt                                                                         <  2:1126839/128‑1 (MQ=255)
                                                        ataaaataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAAtt                                                                         <  1:1542501/128‑1 (MQ=255)
                                                         taaaataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTg                                                                        <  2:688240/128‑1 (MQ=255)
                                                          aaaataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGa                                                                       <  2:715278/128‑1 (MQ=255)
                                                            aataTCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACa                                                                     <  2:230540/128‑1 (MQ=255)
                                                            aataTCAGGATTTTTAGCAAGAGCTCTTGATATTGAAACACGTTGATGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACa                                                                     <  1:191970/128‑1 (MQ=255)
                                                            aataTAAGGATTTTTAGCTAGAGCTCTTGCTATTGTAACATGTTGTTTTTGTACTCCTGACATTTTGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACa                                                                     <  2:30597/128‑1 (MQ=255)
                                                             atatCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACAt                                                                    <  1:1460320/128‑1 (MQ=255)
                                                             atatCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACAt                                                                    >  1:1580118/1‑128 (MQ=255)
                                                               atCAGGATTTTTAGCTAGAGCTCTTTCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTc                                                                  <  2:485611/128‑1 (MQ=255)
                                                               atCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTc                                                                  >  2:878028/1‑128 (MQ=255)
                                                               atCAGGATTTTTAGCTAGAGCTCTTGAAATTGATACACGTTGTTGTTGTCGTACTGACAGTTGTAGAGGAAATTAATGAATTTGATCTTTCATAACAATTGTTTAAAAAAATTCAGAAATTGACATTc                                                                  >  1:873602/1‑128 (MQ=255)
                                                                tCAGGATTTGTAGCTAGCGCTCTTGCTATTGAAACACGTTGGTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTcc                                                                 <  1:425254/128‑1 (MQ=255)
                                                                 cAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCa                                                                >  2:1628580/1‑128 (MQ=255)
                                                                   ggATTTTTAGCTAGAGGTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCAtt                                                              <  1:521245/128‑1 (MQ=255)
                                                                   ggATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACAGTTGGCGAGGAGATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACAGTCCAtt                                                              >  2:1853396/1‑128 (MQ=255)
                                                                       ttttAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCAtttttt                                                          <  2:1828296/128‑1 (MQ=255)
                                                                        gttAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGGGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCActttttt                                                         <  1:489511/127‑1 (MQ=255)
                                                                         ttAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCAtttttttt                                                        >  2:576875/1‑128 (MQ=255)
                                                                          tAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCAttttttttt                                                       <  1:1707043/128‑2 (MQ=255)
                                                                          tAGCTAGAGCTCTAGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTa                                                       <  2:1797391/128‑1 (MQ=255)
                                                                             cTAGAGCTCTTGCTATTGAAACACGTTGGGGTTGTCCTCCTGACATTTG‑‑GAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGa                                                  <  2:968079/128‑1 (MQ=255)
                                                                             cTAGAGCTCGTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACtt                                                    <  1:842646/128‑1 (MQ=255)
                                                                               agagCTCTTGCTATTGAAACACGTTGTTGATGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGa                                                  <  1:1178270/128‑1 (MQ=255)
                                                                                gagCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTTACATTCCTTTTTTTTTACTTGaa                                                 >  1:609058/1‑128 (MQ=255)
                                                                                gagCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGaa                                                 >  1:1356952/1‑128 (MQ=255)
                                                                                 agCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGaaa                                                <  2:1172313/128‑1 (MQ=255)
                                                                                  gCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAg                                               >  1:571998/1‑128 (MQ=255)
                                                                                  gCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAg                                               <  1:102395/128‑1 (MQ=255)
                                                                                   ctctTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGa                                              <  2:1668501/128‑1 (MQ=255)
                                                                                         cTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTtct                                        <  1:67745/128‑1 (MQ=255)
                                                                                           aTTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCTAAAATTTAATCAATTTCAATTGCATTTTTTGTACTTGAAAGCtttaatca                                      >  2:1411982/1‑123 (MQ=255)
                                                                                            ttGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGATGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTACATTTTTTTTACTTGAAAGATTTTCTCCa                                     <  1:16925/128‑1 (MQ=255)
                                                                                            ttGAAACACGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTACATTTTTTTTACTTGAAAGATTTTCTCCa                                     >  2:1281893/1‑128 (MQ=255)
                                                                                                aaCACGTTGTTGTTGTCCTCCTGACATTTGGAGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACtt                                 <  2:620111/128‑1 (MQ=255)
                                                                                                 acacGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTc                                <  2:824312/128‑1 (MQ=255)
                                                                                                   acggtggggttggCCTCCTGCCATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAg                              <  1:1860782/120‑1 (MQ=255)
                                                                                                   acGTTGTTGTTGTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAg                              >  2:1366097/1‑128 (MQ=255)
                                                                                                    cGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGc                             >  1:1500055/1‑128 (MQ=255)
                                                                                                      ttgttgttgTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGt                           <  2:1565466/128‑1 (MQ=255)
                                                                                                      ttgttgttgTCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGt                           >  2:1872956/1‑128 (MQ=255)
                                                                                                      gtgttgttgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGt                           <  1:260746/127‑1 (MQ=255)
                                                                                                       tgttgttgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTATTTTACTTGAAAGATATTCTCCAACTTCAGCGtt                          >  2:1210882/1‑128 (MQ=255)
                                                                                                          tgttgtCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTc                       >  2:105193/1‑128 (MQ=255)
                                                                                                           gttgtCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTTTTTCAAAAATTTCATAAATTGACATTACATTTTTTTTACTTGAAAGATTTTATCCAACTTCAGCGTTTTCt                      >  1:351802/1‑128 (MQ=255)
                                                                                                            ttgtGCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCtt                     <  1:231736/128‑1 (MQ=255)
                                                                                                            ttgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCtt                     <  2:1308606/128‑1 (MQ=255)
                                                                                                            ttgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCtt                     >  2:923765/1‑128 (MQ=255)
                                                                                                            ttgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCtt                     <  1:778081/128‑1 (MQ=255)
                                                                                                             tgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTc                                >  2:528352/1‑116 (MQ=255)
                                                                                                             tgtCCTCCTGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTACTCCAACTTCAGCGTTTTCttt                    >  1:1100950/1‑128 (MQ=255)
                                                                                                                 ctcctGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCa                <  2:1096690/128‑1 (MQ=255)
                                                                                                                   cctGACATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTATACTTGaa                                                 <  2:1963848/93‑1 (MQ=255)
                                                                                                                      gACATTTGTCGAGGATATTTAAGCATTTGATCTATCATACCAATTGTTTCAAAAATTGCCTCACTTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCAGTTaa           <  1:1133986/128‑1 (MQ=255)
                                                                                                                       aCATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCATTTaaa          >  1:27428/1‑128 (MQ=255)
                                                                                                                       aCATTTGGCGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCAGTTaaa          <  2:1928030/128‑1 (MQ=255)
                                                                                                                          tttGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCAttttttt                                                         >  1:310831/1‑78 (MQ=255)
                                                                                                                          tttGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCAGTTAAATTa       <  2:1537156/128‑1 (MQ=255)
                                                                                                                               tGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCAGTTAAATTAGTTaa  <  1:462388/128‑1 (MQ=255)
                                                                                                                               |                                                                                                                               
TTCAAGAACTTTACGTCCCATTTCTTCATCTAATGCCCCAGTTGGTTCATCAGCAAATAAAATATCAGGATTTTTAGCTAGAGCTCTTGCTATTGAAACACGTTGTTGTTGTCCTCCTGACATTTGGTGAGGATATTTATGCATTTGATCTTTCATACCAATTGTTTCAAAAATTTCATCAATTGACATTCCATTTTTTTTACTTGAAAGATTTTCTCCAACTTCAGCGTTTTCTTTAGCAGTTAAATTAGTTAA  >  CP016816/25077‑25331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑