Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8952.T54.3% inf / inf 422intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (111/82);  new base T (191/38);  total (302/120)
Fisher's exact test for biased strand distribution p-value = 6.05e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 544 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021
                                                                                                                                            |                                                                                                                                       
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑Tg                                                                                                                                           >  2:2506894/1‑128 (MQ=255)
 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTGTCAACAT‑TACAACGCTTTCAAATTG‑GA‑TTTTTTA‑G‑G‑‑C‑‑T‑GG‑‑‑‑t                                                                                                                                      >  2:1631558/1‑128 (MQ=255)
 ttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑GTTTTTA‑G‑G‑‑C‑‑g‑tg‑‑‑‑t                                                                                                                                      >  1:1784822/1‑128 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTATCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑tt                                                                                                                                     >  2:226249/1‑128 (MQ=255)
   atttttttttAT‑AAAAAAAATAAAAATTTTTAT‑TTTAAAGCCATTTTTAAAAAATCCTTTTTTTTAGGCTTTTTTTTTTACTTATCAAAAT‑TACAACGCTTTCAAAGTT‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑tt‑‑‑‑ttt‑t                                                                                                                                  <  1:1478597/126‑1 (MQ=255)
    aatttttttATAAAAAAAAATAAAAATTTTTAA‑TTTAAATCCATTTGTAAAAAAGCCTATTTTTTATGTTTTTTTTTATAATTATCAAAAT‑TACAACGCTTTCAAATTG‑TT‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑t                                                                                                                                  <  1:304430/126‑1 (MQ=255)
     ttttttttATAAAAAAAAATTAAAATTTTTAA‑TTTAAAGCCATTTTTAAAAAAGCCTATTTTTTTGGGTTTTTTTTATACTTATCAACAT‑TACAACGCTTTAAAAGTG‑TT‑TTTTTTT‑G‑G‑‑C‑‑t‑tt‑‑‑‑ttt‑tt                                                                                                                                 <  1:1088221/128‑1 (MQ=255)
        tttttAT‑AAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttt                                                                                                                            >  1:936772/1‑128 (MQ=255)
         ttttATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑A‑‑T‑TG‑‑‑‑ttt‑tt‑tttt                                                                                                                            >  2:1366832/1‑128 (MQ=255)
             tataaaaaaaaTAAAAATTTTTCA‑TTTAAAGCCCTTTGTAAAAAAGCCGATGTTCTAGGATTTTTATTATACTTATCATCAT‑TACAACGCTTTCAAAGTG‑TA‑TTCTTTT‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttttttt                                                                                                                        >  1:2925522/4‑128 (MQ=255)
             ataAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttttttt                                                                                                                        >  2:1980113/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑ttttttttt                                                                                                                       >  1:2743793/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑ttttttttt                                                                                                                       >  1:2703499/1‑128 (MQ=255)
               aaaaaaaaaaaaaaATTTTTTATTTTAAATCAATTTTTAAAAAATCATTTGTTATTTTCTTTTTATTTTAATTATCAAATT‑TAAAACGTTTTTAAATTT‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑ttttttttt                                                                                                                       <  1:2350178/128‑1 (MQ=255)
               aaaaaaaaaTAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑tgt‑tt‑tttttttttt                                                                                                                      >  2:1582565/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTCA‑TTTACAGCCATTTGTAAAAAACCCTATGTTCTATGCTTTTTATTATAATTATCAACAT‑TACAACGCTTTAAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TT‑‑‑‑gtt‑tt‑ttttttttttt                                                                                                                     <  2:3033139/128‑1 (MQ=255)
                 aaaaaaaTAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑T‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttttttttttt                                                                                                                    >  1:395709/1‑127 (MQ=255)
                  aaaaaaTAATAATTTTTCA‑TTTAAAGCCATTTTTAAAAAATGCTATGTTCTAGGCTTTTTATTAAAATTATTAACAT‑TAAAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑tt‑‑‑‑ttt‑tt‑ttttttttttttg                                                                                                                   <  1:155124/128‑3 (MQ=255)
                   aaaaataaaaatTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTATGCTTTTTATTATACTTATCAACAT‑TACAACGCATTCAAAGTG‑TA‑TTTTATA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttttttttttttt                                                                                                                  >  1:518604/1‑125 (MQ=255)
                    aaaataaaaatTTATAA‑TTTAAAGCCAATTTTAAAAAACCCTATTTTCTACGCTTTTTATTATACTTTACAAAAT‑TACAACCCATTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttttttttttttgt                                                                                                                 <  2:3151555/128‑5 (MQ=255)
                          aaaatTTTTTA‑TTTAAATCCATTTTTAAAAAAGCCTATTTTTTATGCTTTTTTTTATACTTATAAAAAA‑TAAAACCCTTTAAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAt                                                                                                           <  2:3082796/128‑1 (MQ=255)
                          aaaatTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑tttttttttttttttttaata                                                                                                           >  1:2995408/1‑118 (MQ=255)
                          aaaatTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑ttt‑tt‑ttttttttttttttttaaaat                                                                                                           >  2:2090818/1‑118 (MQ=255)
                          aaaaaTTTTAA‑ATTAAATCCATTTTTAAAAAATCCTATGTTCTATGCTTTTTATTATAATTATCAACAT‑TAAAACTCTTTAAAATTG‑TT‑TTTTTTA‑T‑G‑‑CTTT‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAt                                                                                                           <  2:2721337/128‑1 (MQ=255)
                            attttttAT‑TTTAAATCCAATTTTAAAAAATACTTTGTTATAGGTTTTTTATTATAATTATAAAAAT‑TAAAACGATTTAAAAGTG‑TA‑TTTTTTT‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATaaa                                                                                                        <  2:919087/126‑1 (MQ=255)
                            aatTTTTTA‑TTTAAATCAATTTGTAAAAAATACTTTGTTCTTTGATTTTTTTTTTAATTATAAAAAT‑TATAAATCTTTCAAATTG‑TA‑TTTTTTT‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATaaa                                                                                                        <  2:1318175/128‑1 (MQ=255)
                            aatTTTTAA‑TTTAAATCATTTTTTTAAAATGCCTTTGTTGTATGATTTTTATTTTAATTATATAAAT‑TACAACTTTTTCAAATTT‑TT‑TTTTTTA‑T‑G‑‑T‑‑T‑TG‑‑‑‑ttt‑tt‑ttttttttttttttgtaaaaata                                                                                                         <  1:2456531/128‑13 (MQ=255)
                             atTTTTAA‑TTTAAATCAATTTTTAAAAAAGAGTATTTTCTAGTTTTTTTATTATACTTATCAAAAA‑TACAACTCTTTAAAATTT‑TA‑TTTTTTT‑T‑G‑‑C‑‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAg                                                                                                      <  1:2157824/128‑1 (MQ=255)
                              tttttCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATaaaa                                                                                                       >  2:51264/1‑128 (MQ=255)
                               ttttTA‑TTTAAAGACATTTGTAAAAAATACTTTTTTTTATGGTTTTTATTATAATTATAAAAAT‑TACAACCCTTTAAAATTG‑TT‑TTTTTTA‑G‑G‑‑CT‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGt                                                                                                     <  2:780390/128‑1 (MQ=255)
                               ttttCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATaaaat                                                                                                      >  2:1037981/1‑127 (MQ=255)
                                tttaa‑tttaaATCCATTTTTAAAAAAGCCTATGTTCATTGCTTTTTATTATAATTATCAACAT‑TACCACGCTTTAAAATTGTTT‑TTTTTTT‑G‑GT‑T‑‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGt                                                                                                     <  2:2640749/128‑1 (MQ=255)
                                tttCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑T‑Aaaaaaaaactta                                                                                                   >  1:282482/1‑124 (MQ=255)
                                 ttaa‑TTTAACGCCATTTGTAAAAAAGCCTATGTGCTAGGCTTTTTATTTTACTTTTCAACAT‑TACACCGCTTTTAAATGG‑TA‑TTTTTTT‑G‑G‑‑G‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTa                                                                                                    <  1:3180700/125‑1 (MQ=255)
                                      tttAAAGCCATTTGTAAAAAAGCCTATGATCTAGGCTTTTTATTAAACTTATCAACAT‑TACAACGCATTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTTATTATTTTTTTTTTTGT‑A‑AAAATAAAAGAAAGA‑t                                                                                               >  1:2607429/1‑128 (MQ=255)
                                         aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAATAAAATAATA‑ttttt                                                                                           >  2:408281/1‑126 (MQ=255)
                                         aaaCCCATTTTTAAAACAGCGTTTGTTATTTGCTTTTTATTATAATTATCAAAAT‑TAAAAAGGTTTCAAAGTG‑GT‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑ttt                                                                                             <  2:2389995/128‑1 (MQ=255)
                                          aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAATA‑TTTTGAt                                                                                         >  2:1786663/1‑128 (MQ=255)
                                           tgCCATTTTTAAAAAATCCTATGTTATTGGCTTTTTATTTTACTAATAAACAT‑TAAAACGCTTTCAATTTG‑TA‑TTTTTTT‑T‑GTTT‑‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGa                                                                                          <  1:2797453/127‑1 (MQ=255)
                                               aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAATTAAAA‑tttttaaaaaa                                                                                     >  2:856992/1‑120 (MQ=255)
                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAATT‑TTTTGAACa‑agaaaa                                                                                >  1:1614087/1‑123 (MQ=255)
                                                     aaaaaaGACTATTGTGTAGGTTTTTTTTTATAATTATAAAAATATAC‑ACGATATCAAAGTT‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCaaaa                                                                               <  2:1656276/128‑1 (MQ=255)
                                                      aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAATGTATTA‑TTTTGAAAA‑ACCaaaaa                                                                              >  2:1226057/1‑127 (MQ=255)
                                                      aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTTTGATAAAAAAAAAGAAAAA‑TTTTGATCA‑ACCaaaaa                                                                              >  2:2814818/1‑127 (MQ=255)
                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAATTATGA‑TTTGGA‑AA‑ACCaaaaaaa                                                                            >  2:2981845/1‑125 (MQ=255)
                                                       aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAAGTAATT‑TTTTGATAA‑ACCAAAACta                                                                            >  1:363085/1‑128 (MQ=255)
                                                        aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑T‑AATATATAATTAATA‑TTTGGTTAA‑AACaaaaaaa                                                                            >  2:2688086/1‑125 (MQ=255)
                                                         aaGCCTATGTTATATGCTTTTTATTTTACTTATTAACAT‑TAAAACGCTTTCAAATTG‑TT‑TTTTTTT‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACtat                                                                           <  2:2655755/128‑1 (MQ=255)
                                                              tagaacatAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAATA‑TTTCTTGAA‑ACCAAAACTATATCaa                                                                      >  2:2527236/8‑128 (MQ=255)
                                                                ttttctttgtttttttttATACTTTTCAAAAA‑TAAAACCCTTTAAAATTT‑TA‑TTTTTTA‑G‑G‑‑G‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCaaa                                                                     <  1:3133757/118‑1 (MQ=255)
                                                                 gTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑T‑AAAATAAAAGTAAGA‑TTTGGTTGA‑ACCAAAAACTTATCaaaaa                                                                   >  2:2590460/1‑128 (MQ=255)
                                                                  ttCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAATATAAAA‑TTTTGATAA‑ACCAAAATTA‑ATAaaaaaa                                                                  >  2:1542133/1‑128 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑T‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑ATAATAATATTAAAT‑TTTGTAAAA‑ACCAAAAATA‑ATaaaaaaaaat                                                               >  2:1693815/3‑126 (MQ=255)
                                                                   catAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTT‑‑‑T‑A‑AAAATAAAAGTAATA‑TTTTGAAAA‑ACAAAAATTATAAAAAAAAAAAT‑aaa                                                           >  1:645062/3‑128 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAT‑TTTGTTTAA‑ACCAAAAAAATATCAAAAAAAAT‑a                                                             >  1:810827/1‑128 (MQ=255)
                                                                      aGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAATTAAGT‑TTTGGTTAA‑ACCAAAAGATTTTAAAAAAAATT‑aaa                                                           >  2:2613898/1‑128 (MQ=255)
                                                                           ttttATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAA‑TTTGTATCA‑ACCAAAAAAATATAAAAAAAATT‑aaaaaa                                                        >  1:2865017/1‑128 (MQ=255)
                                                                            tttATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTTTAA‑AAAATAAAATTAAAA‑TTTGTATCA‑ACCAAAACAAAAAAAAAAAAATG‑aaaaaaaa                                                      >  1:2632373/1‑128 (MQ=255)
                                                                               attatAATTATCAAAAT‑AACAACGCTTTCAAATTT‑TA‑TTTTTTATG‑G‑‑G‑‑TGTT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAAta                                                    <  1:2519003/128‑1 (MQ=255)
                                                                                ttatACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAAATAAAA‑TTTTGATAA‑ACCAAAAAAATAtaaaaaaaatt‑aaaaaaaatt                                                    >  2:936073/1‑127 (MQ=255)
                                                                                ttatACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAATA‑TTTGTAAAA‑AACAAAAATATATAAAAAAAATT‑AAAAAAAAtat                                                   >  2:2035525/1‑127 (MQ=255)
                                                                                ttatACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAATTAAAA‑TTTTTTTAA‑AACAAAAATAAAAAAAAAAAATT‑AAAAAAAAtat                                                   >  2:1720759/1‑127 (MQ=255)
                                                                                 tataCTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAAGTAATA‑TTTTGATAA‑ACCAAAACTATATCAAAAAAATT‑aaaaaaaaata                                                   >  2:2909878/1‑125 (MQ=255)
                                                                                   taCTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAAAAAAAATTTTGAAAAA‑ACAAAAACTAAAAAAAAAAAATT‑AAAAAAAAtattt                                                 >  2:714739/1‑128 (MQ=255)
                                                                                    aCTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAATTTAATA‑TTTTGTTAA‑AAAAAAAATATATAAAAAAAATT‑AAAAAAAAaattttt                                               >  2:1850445/1‑127 (MQ=255)
                                                                                     cTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAAATAATT‑TTTTGAAAA‑AACAAAAAAAATAAAAAAAAATT‑aaaaaaaaaatttaa                                               >  1:3094788/1‑121 (MQ=255)
                                                                                     cTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTATA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAATTAAGT‑TTTGGATCA‑ACCAACACTATTTAAAAAAAATT‑AAAAAAAAtatttat                                               >  1:2482832/1‑126 (MQ=255)
                                                                                        aTCAACAT‑TACAACGCTTTCAAAGTA‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAATA‑TTTTGTTAA‑AACAAAACTATATAAAAAAAAAT‑AAAAAAAAtattttagttt                                           >  2:353584/1‑127 (MQ=255)
                                                                                         tCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑T‑AAAAAAAAATTATGA‑TTTGGATAA‑ACCAAAACTATAAAAAAAAAAAT‑AAAAAAAAtagtttatatta                                          >  2:569022/1‑123 (MQ=255)
                                                                                         tCAAAAT‑TACAACGGTTTAAAAGTG‑TATTTTTTTG‑G‑G‑‑T‑‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAg                                         <  1:2758364/128‑1 (MQ=255)
                                                                                          cAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTTTGA‑AAAAAAAAATTTAAA‑TTTTTAAAACACCAAAAATAATTAAAAAAATTT‑AAAAAAAAttatttatttatg                                         >  2:2871028/1‑125 (MQ=255)
                                                                                           aaCAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTTATT‑TTTTGATAA‑ACAAAAAATATATAAAAAAAATT‑AAAAAAATTATTTTATTTGatt                                        >  2:627610/1‑126 (MQ=255)
                                                                                            aCAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAA‑TTTGGATAA‑ACCAAAAATATAAAAAAAAAATT‑AAAAAAAAtattttattttattt                                       >  2:1160918/1‑123 (MQ=255)
                                                                                               t‑tACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAAATTATA‑TTTTGATAA‑ACAAAAAATATATAAAAAAAATT‑AAAAAAAAATTTTTAATTGATTTTaaa                                   >  2:2202522/1‑128 (MQ=255)
                                                                                                  taaaCGTTTTTAAATTG‑TTTTTTTTTG‑G‑G‑‑T‑‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAAt                                 <  1:2037904/126‑1 (MQ=255)
                                                                                                  aataCGCTTTCAAATTG‑TA‑TTTTTTT‑GTG‑‑T‑‑T‑TT‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAAt                                 <  1:1709105/125‑1 (MQ=255)
                                                                                                   taaatattttAAAGTG‑TT‑TTTTTTT‑G‑G‑‑T‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAAAATAGTAATA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAAt                                 <  1:2669622/122‑1 (MQ=255)
                                                                                                   cAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAAGTTAAT‑TTTTTTTAA‑ACAAAAAAAAAAAAAAAAAAATT‑AAAAAAAAAATTTTATTTGATTTTaaaa                                  >  1:870046/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAA‑TTTTGAACA‑ACAAAAAATATATAAAAAAAATT‑AAAAAAAAAATTTTATTTTATTTTAAAAACt                               >  2:24792/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑T‑AAAATAAAATTTATT‑TTTTGAAAA‑ACAAAAACATTATAAAAAAAAAT‑TAAAAAAATATTTTATTTGTTTTTaaaaaatg                              >  1:101139/1‑124 (MQ=255)
                                                                                                     aCGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAATA‑TTTGGATCA‑ACCAAAAAATTATAAAAAAAATT‑AAAAAAAAAAGTTTTTTTGAATTTAAAATATg                              >  1:1316306/1‑128 (MQ=255)
                                                                                                     aCGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAATTAAAA‑TTTGGAACA‑ACAAAAAAT‑TATAAAAAAAATTAAAAAAAAAAATTTTAGTTGATGTTAAAATATg                              >  2:3169364/1‑128 (MQ=255)
                                                                                                      cGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAA‑TTTGTATAA‑ACCAAAAATATATAAAAAAAATT‑AAAAAAAATTTTTTATTTAATTTTaaaaaat                               >  2:1935321/1‑125 (MQ=255)
                                                                                                         tttCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTTTTTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAA‑TTTTGTTAA‑AAAAAAAATATAAAAAAAAAAAT‑AAAAAAAATAATTTATTTTAATTTAAAAtatag                             >  1:1136345/1‑124 (MQ=255)
                                                                                                         tttCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAAAAAAATAAGA‑TTTGGATAC‑ACCAAAAAAATATAAAAAAAAAT‑AAAAAAAAAATTTTAATTGATGTTCATATCTgaaaat                         >  1:2978247/1‑123 (MQ=255)
                                                                                                          ttCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTTAAA‑TTTGTAAAA‑CAAAAAAATAATAAAAAAAAATT‑AAAAAAAATAGTTAATTTTATTTTaaaaatttaat                           >  2:2559028/1‑121 (MQ=255)
                                                                                                          ttCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAAGAAAAA‑TTTGGAACA‑CCCAAAACTATATCAAAAAAATT‑AAAAAAAA‑ATTTTAATTAATTTTCAAATCTTCata                          >  2:2456211/1‑128 (MQ=255)
                                                                                                           tCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAATTAATA‑TTTGGATCA‑ACAAAAAAATTATCAAAAAAATT‑AAAAAAAAAATTTTATTTGAATTTAAAATATgaaata                         >  2:454064/1‑123 (MQ=255)
                                                                                                            cAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAAAAAAGTAAGA‑TTTGGATTA‑ACCAAAACTATATAAAAAAAATT‑AAAAAAAATATTTTAGTTTAGTTTAAAATATGCatatat                       >  2:1014587/1‑128 (MQ=255)
                                                                                                             tttattttttttttttT‑G‑C‑‑T‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATAA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                       <  2:2763333/118‑1 (MQ=255)
                                                                                                             aaaGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAATT‑TTTGGTACA‑ACAAAAAATATATAAAAAAAATT‑AAAAAAAATATTTTTTTTGATTGTCaaaatgcaataat                        >  2:1398126/1‑118 (MQ=255)
                                                                                                             aaaGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAGA‑TTTGGAAAA‑ACAAAAACTAATACAAAAAAATT‑AAAAAAAAAATTTTATTTTATTTTAAAAAATGAAtatata                      >  2:2311545/1‑128 (MQ=255)
                                                                                                              aaGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAAAA‑TTTTTATAA‑AAAAAAAAAAATAAAAAAAAATT‑AAAAAAAAAATTTTATTTTATTTTAAAAAATGCAtatata                      >  1:1223576/1‑128 (MQ=255)
                                                                                                                    tA‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAAAAAAATAACA‑TTTGGAACA‑ACCAAAACATTATAAAAAAAATA‑TAAAAAAATAGTTTATTTGTCTTTAAAATATGAaaataaataaca                 >  1:33435/1‑121 (MQ=255)
                                                                                                                     a‑TTTTTTA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAAAAAATTAATA‑TTTGTATCA‑CCCAAAAATTTAAAAAAAAAATT‑AAAAAAAA‑AGTTAATATTAGTTTAAATTATGCATATATAGAACaat               >  1:2884315/1‑127 (MQ=255)
                                                                                                                       ttttttA‑G‑G‑‑C‑‑T‑TGTTT‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAATA‑TTTGGATAA‑AACAAAACTATTAAAAAAAAATT‑AAAAAAAATATTTTTGTTTTGTTTAAAATATGCattttatttaaaa                >  1:3077109/1‑117 (MQ=255)
                                                                                                                       ttttttA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAAAAAAAGAAAGA‑TTTCTAACA‑ACCAAAACTAAAACAAAAAAAAT‑AAAAAAAAATATTAATTTGAGATTAAAAACTGCAATTTTTTTACAAAgg             >  1:2425183/1‑128 (MQ=255)
                                                                                                                          tttA‑G‑G‑‑C‑‑T‑TGTT‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAAAAAAAGTAAGT‑TTTTTATAA‑ACCAAAAATATAAAAAAAAAATT‑AAAAAAATAAATTTATTTTATTTTCAAAAAAGAATATATATTAaaaaata            >  2:1472986/1‑125 (MQ=255)
                                                                                                                          tttA‑G‑G‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAATTAATA‑TTTTGAAAA‑AACAAAAATATAAAAAAAAAATT‑AAAAAAAAAATTTTAATATCTTTTAAAATAAGAATATATAGTAaaaaatca           >  1:2541324/1‑124 (MQ=255)
                                                                                                                                 g‑‑C‑‑T‑TGT‑‑‑TTT‑TT‑TTTTTTTTTTTTT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTTTATCAAAAAAATT‑AAAAAAAAAAGTTTAGTTGAGTTTCAAATCTGCTTTTAAAGTACAAAGTAAttttt      >  2:1079598/1‑126 (MQ=255)
                                                                                                                                            |                                                                                                                                       
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCA‑TTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACAT‑TACAACGCTTTCAAAGTG‑TA‑TTTTTTA‑G‑G‑‑C‑‑T‑TG‑‑‑‑TTT‑TT‑TTTTTTTTTTTGT‑A‑AAAATAAAAGTAAGA‑TTTGGATCA‑ACCAAAACTATATCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATA  >  CP016816/203768‑204021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑