Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT51.1% 34.9 / 259.7 314intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (50/103);  new base T (51/109);  total (102/212)
Fisher's exact test for biased strand distribution p-value = 9.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-02

Only 100 of 357 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCCTTTTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202370‑202621
                                                                                                                               |                                                                                                                                  
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCC‑‑Ttaaaaatt‑‑aaaa                                                                                                                             >  1:3067349/1‑128 (MQ=255)
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑ATT‑CAAAAATAAAAAAAAAAAAATACCCtt‑‑‑aaaaat‑‑aaaaa                                                                                                                            >  1:2935883/1‑128 (MQ=255)
   ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGAGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCAAT‑‑‑AAAAAT‑‑aaaaaa‑aa                                                                                                                        >  2:2485768/1‑128 (MQ=255)
    tttattttattttaaataaAAAAACATAAACTTTATAATTTTTTAAATTTATATTCTTGTTTTATTTTTTTTTTTTTGTTT‑TT‑TTT‑AAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑aaaaaa‑aa                                                                                                                        <  1:1645505/117‑1 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑aaaaaa‑aaa                                                                                                                       >  1:3162948/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTTATCTATTATTTTATTTATTT‑AA‑CTT‑CACAAATAAAAAAAAAAAAAAACCC‑AAAAAAAAAT‑‑aaaaaa‑a                                                                                                                         >  1:1803456/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCAC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaa                                                                                                                   >  2:271236/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAATTTATATCATCTTTATCTAATTTATTATTTTTTT‑AT‑CTT‑CACAAATAAAAAAAAAAAAAAAAC‑‑‑ATAAAAAAT‑‑aaaaaa‑aaaaaaaa                                                                                                                  >  2:412607/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATTAAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑‑taaata‑aaaaaaaaaa                                                                                                                >  1:2728326/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaa                                                                                                                 >  1:3041010/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaa                                                                                                                 >  2:2539443/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAAACCCC‑‑ATAAAAAAT‑‑aaaaaa‑aaaaaaaaa                                                                                                                 >  1:2784375/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAAAACCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaa                                                                                                                 >  2:2410997/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAAAAAAACAATT‑‑‑AAAAAT‑‑aaaaaa‑aaaaaaaaaa                                                                                                                >  1:1007304/1‑128 (MQ=255)
             ttttaattaaAATAAAAAAAAAATAAAAAATAATATAATTTATATCCTCGTGAACTATTTTTTTATTTTTTT‑AT‑ATT‑AAAAAAAAAAAAAAAAACAATCCCC‑‑ATAAAAATT‑‑aaaaaa‑aaaaaaaaaaa                                                                                                               <  2:786421/126‑1 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCAC‑‑ATTAAAAATT‑‑aaaaaa‑aaaaaaaaaaa                                                                                                               >  2:3053629/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATAACCaaaaaaaaaaa‑‑aaaaaa‑aaaaaaaaa                                                                                                                 >  1:1487684/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTA‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAAAACCCaaaaaaaaaaa‑‑aaaaaa‑aaaaaaaaa                                                                                                                 >  1:2028399/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTAATTTTTTATTTATAT‑AT‑CAT‑CACAAATAAAAAAAAAAAAAACCCAAT‑‑‑AAAAAT‑‑aaaaaa‑aaaaaaaaaaaa                                                                                                              >  1:190036/1‑128 (MQ=255)
               ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCAC‑‑ATTAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaa                                                                                                             >  2:3155066/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑aaaaaa‑aaaaaaaaaaaaaaa                                                                                                           >  1:2734898/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCACATT‑‑‑AAAAAT‑‑aaaaaa‑aaaaaaaaaaaaaaa                                                                                                           >  1:685551/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaaa                                                                                                            >  2:2873612/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaac                                                                                                            >  1:761257/1‑127 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTATATATATATTA‑AT‑CTT‑CACAAAAAAAAAAAAAAAAATCAAC‑‑TTAAAAAAT‑‑aaaaaa‑aaaaaaaaaaaaaaa                                                                                                           >  1:928418/1‑128 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTATTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAAAAATCACCTTAAAAATAaa‑‑aaaaaa‑aaaaaaaaaaaaaa                                                                                                            >  1:1246750/1‑128 (MQ=255)
                    taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CAAAAATAAAAAAAAAACAATCCAC‑‑‑TAAAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAAATaa                                                                                                       >  1:1701413/1‑128 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCC‑‑ATTAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                       >  1:2561127/1‑124 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:732158/1‑123 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAAACCCC‑‑TTAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:1623399/1‑123 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CAAAAATAAAAAAAAAACAAT‑‑CAAATAAAAAATT‑‑aaaaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:46182/1‑123 (MQ=255)
                      aaaTAACATAAAATTAAAAATTATTATAATTTTTTACCTCGTGATTTTTTTTTTTATTTGTTT‑AT‑TTT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTaaa                                                                                                      <  2:2572776/128‑1 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑Aaaaaa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:2832231/1‑128 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATACCC‑‑TTAAAAATT‑‑Aaaaaa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:317193/1‑128 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATACTCGTTATCTATTTTTTTATTTTTTT‑AT‑CTT‑AACAAATAAAAAAAAAAAAATAAAC‑‑TTAAAAATT‑‑Aaaaaa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:32803/1‑128 (MQ=255)
                        aaaacataaacataaaAATTCTTAAAATTTAGATCATCTTTTTATATTTTTTTATTTTTTT‑AT‑CTT‑AAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTaaaaa                                                                                                    <  1:1104681/124‑1 (MQ=255)
                                 aattAATAATTAATATAATTTATATCCTCGTTATATATTTTTTTATTTTTTT‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  2:2827277/126‑1 (MQ=255)
                                 aCTTAATAATTATTATAAATTACATACTCGTTTTATATTTTTTTATTTTTTT‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  2:51903/128‑1 (MQ=255)
                                           tCTTATAATGTTGATCCTAGTTATCTATTTTTTTATTTTTTT‑AT‑ATT‑AACAAATAAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                                <  2:2904223/128‑1 (MQ=255)
                                                      ttaTCCTCGATATATTTTTTTTTATTTTTTT‑AA‑CTT‑AAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                      <  2:2672127/126‑1 (MQ=255)
                                                         tcctagtgtataaTTTTTTTAATTGTTT‑AT‑TTTACAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                    <  1:2678410/116‑1 (MQ=255)
                                                         accTCGTTATCATTTTTTTTATTTTTTT‑AT‑TTT‑CACAAAAAAAAAAAAAACAAACCCC‑TTAAAAATTA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                    <  2:118054/127‑1 (MQ=255)
                                                          actttttattattttttttattttttt‑aT‑ATT‑AAAAAATAAAAAAAAAAAAATACCC‑TTAAAAATTA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  1:344062/116‑1 (MQ=255)
                                                          aatctttatatatttttttattttttT‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:1357047/118‑1 (MQ=255)
                                                          aatatttatttatttttttattttttT‑AA‑AAT‑AAAAAATAAAAAAAAAAAAAAACCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  2:549285/118‑1 (MQ=255)
                                                          aatatttatatatttttttattttttT‑AT‑ATT‑CAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  2:495363/118‑1 (MQ=255)
                                                           tattttttttttttttttATTT‑TTT‑AT‑ATT‑AAAAAATAAAAAAAAAAAAATCACCTTAAAAATTAA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:2938804/117‑1 (MQ=255)
                                                           ctcgttttatATTTTTTTTTTTTTTT‑AT‑ATT‑AACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  2:3019596/119‑1 (MQ=255)
                                                            tatttttatatttttttattttttT‑AA‑ATT‑TAAAAATAAAAAAAAAAAAATTCCCTTAAAAATTAA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:2506308/120‑1 (MQ=255)
                                                            atgttatatATTTTTTTTTTTTTTT‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAAAACCCTTAAAAATAAA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:1512194/120‑1 (MQ=255)
                                                             tgtgttatATTTTTTTATTTGTTT‑AT‑ATT‑AACAAA‑AAAAAAAAAA‑AATACCC‑‑TTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:2623042/121‑1 (MQ=255)
                                                              tttttatATTTTTTTTTTTTTTT‑AT‑ATT‑TAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  2:1936362/122‑1 (MQ=255)
                                                              tttattatattttttattttttt‑at‑TAT‑AAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  2:1101097/119‑1 (MQ=255)
                                                              tgttatatttttttttttttttT‑AT‑TTA‑TAAAAATAAAAAATATA‑AATTACC‑‑TTAAAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:1713310/120‑1 (MQ=255)
                                                              gttttatATTTTTTTAATTTTTA‑AT‑ATT‑TAAAAATAAAAAAAAAACAAAACCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:275613/122‑1 (MQ=255)
                                                                 attttttttttttATTGTTT‑AT‑AAT‑AAAAAAAAAATAAAAAAAAAACCCCTAAAAAATTAA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:2055350/123‑1 (MQ=255)
                                                                 atatatttttttattttttT‑AT‑ATA‑AAAAAATAAAAAAAAAAAAATAACC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  2:1454284/125‑1 (MQ=255)
                                                                   caatttttttattttttt‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:2196565/126‑1 (MQ=255)
                                                                    tttttttttattttttt‑tt‑att‑AAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑‑‑TAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCGCATTTTAttttt                                                      <  1:826260/126‑1 (MQ=255)
                                                                    atatttttttttttttt‑AT‑‑TT‑AAAAAATAAAAAAAAAAAAAAACCC‑‑TAAAAAAAT‑‑‑AAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  2:1267747/125‑1 (MQ=255)
                                                                     atttttttattttttt‑AT‑ATT‑AACAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:389630/128‑1 (MQ=255)
                                                                     aTTTTTTTATTTTTTA‑AT‑ATA‑CAAAAAAAAAAAAAAAAAAAACCC‑‑‑TTAAAAATA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:242051/128‑1 (MQ=255)
                                                                      tttttttattttttt‑aT‑ATT‑AAAAAAAAAAAAAAAAAAAATCCCCTTT‑‑AAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  2:2095933/128‑1 (MQ=255)
                                                                       tttttttttttttt‑AT‑ATT‑CAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                    <  1:2528358/128‑1 (MQ=255)
                                                                       tttttttttttttt‑AA‑TTT‑AAAAAAAAAAAAAAAAAAAATACAC‑TTAAAAATTA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:32803/128‑1 (MQ=255)
                                                                       ttttttattttttt‑at‑TTT‑TAAAAAAAAAAAAAAAAAAAATCCC‑‑ATAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  2:2446671/128‑1 (MQ=255)
                                                                       ttttttattttttt‑at‑TAT‑AAAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                   <  2:2147505/128‑1 (MQ=255)
                                                                       ttttttATTTGTTTAAT‑TTA‑AAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  2:910056/128‑1 (MQ=255)
                                                                       ttttttAATTTTTT‑AT‑TAT‑AAAAAATAAAAAAAAAAAAATACCCAT‑‑‑ATAAAT‑‑TTAAAA‑AAAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                    <  1:2569432/128‑1 (MQ=255)
                                                                        ttttttttttttT‑ATAATT‑AAAAAAAAAAAAAAAAACACTACCC‑‑AAAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTAAACCACATTTTATTTTTa                                                     <  1:2898329/128‑1 (MQ=255)
                                                                        ttttttttttttT‑AT‑TTT‑AAAAAATAAAAAAAAAACAAAAACC‑‑TTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                    <  2:1465762/128‑1 (MQ=255)
                                                                           tttttttttt‑tT‑CTT‑TAAAAATAAAAAAAAAAAAATACCCTT‑‑‑ATAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                <  1:379006/125‑1 (MQ=255)
                                                                           tttttttttT‑AT‑TTT‑TAAAAATAAAAAAAAAAAAATAAAC‑TTAAAAATTA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                                  <  1:1550188/125‑1 (MQ=255)
                                                                            tttattttt‑AT‑ATT‑AACAAATAAAAAAAAAACAAAACCCAT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  2:623100/122‑1 (MQ=255)
                                                                            tATTTTTTT‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                <  2:175905/128‑1 (MQ=255)
                                                                             tttttttT‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAAT‑CCCATTAAAAATTA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                <  2:3073258/127‑1 (MQ=255)
                                                                             aTTTTTTT‑AT‑TTT‑AAAAAAAAAAAAAAAAAAAATTCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  2:1550622/128‑1 (MQ=255)
                                                                             aTTTTTTT‑AT‑TAT‑AAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  2:2329949/128‑1 (MQ=255)
                                                                             aTTTTTTT‑AT‑ATT‑TAAAAATAAAAAAAAAAAAAACACC‑‑TTAAAAAAT‑‑‑AAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                              <  2:601305/128‑1 (MQ=255)
                                                                               tttttt‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  2:357453/125‑1 (MQ=255)
                                                                                 tttt‑AT‑ATT‑AAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAAT‑‑‑TAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  2:2733835/127‑1 (MQ=255)
                                                                                    t‑AT‑CTA‑CACAAATAAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAAACAAAAAACAAAATATATTATATAAAATAAAATATTTTAAAACTTTTAATTTTTAAAATAATAAAttat                                       >  1:2455517/1‑126 (MQ=255)
                                                                                     ttttaattaaaaaaaaaaaaaaaaaaaATTCCCTTAAAAATTAA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                            <  2:731451/117‑1 (MQ=255)
                                                                                     atatatttaaaaaaTAAAAAAAAAA‑AATAACCTAT‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  2:2009687/117‑1 (MQ=255)
                                                                                      ttatataaaaaaaaaaaaaaaaaaaaaaACCCTT‑‑‑AAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                        <  2:2838841/118‑1 (MQ=255)
                                                                                      taaaaataaaaaaaaaaaaaaaaaCAATACC‑‑ATTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                         <  1:1210251/118‑1 (MQ=255)
                                                                                             aaaaaaaaaaaaaaaaaaaATAACCTTAAAAATAAA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCAAATTTTATTTTTAAAATAAGATATTGACat                                    <  2:190269/125‑1 (MQ=255)
                                                                                               caAATAAAAAAAAAACAATCCCC‑‑TTAAAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAA‑AAAAAACAAACACTATTTATTAAAAATCCAAATTTAACAACATTTTATTTTAAAAATAAAATATTTAAAAAatat                               >  1:2752206/1‑128 (MQ=255)
                                                                                               aaaaaaaaaaaaaaaaaATACCC‑‑ATAAAAAAT‑‑‑‑AAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                              <  2:3202686/127‑1 (MQ=255)
                                                                                                   tAAAAAAAAAACAAACCCC‑‑ATAAAAATA‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                            <  1:263808/128‑1 (MQ=255)
                                                                                                            aaaaaaataacattaaaaatt‑‑aaaaaA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata                     <  2:838882/116‑1 (MQ=255)
                                                                                                               aaaataaaattAAAAATT‑‑ATAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  2:1385238/119‑1 (MQ=255)
                                                                                                                  aatcaaattaaaaat‑‑taaaaa‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata               <  2:2796132/119‑1 (MQ=255)
                                                                                                                  aatatatttaaaatt‑‑aaaaaa‑AAAAAAAAAAAAATACTAAAAACAAACTCTATTTCTTATAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatataaa               <  2:1051297/119‑3 (MQ=255)
                                                                                                                   aaaaattaaaaaattaaaaaaA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  2:756949/123‑1 (MQ=255)
                                                                                                                      ttaaaaataaa‑‑aaaaaa‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:1161800/124‑1 (MQ=255)
                                                                                                                      cccttaaaaat‑‑taaaaa‑AAAAAAAAAAAAAAACTAAAAACAAAGTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:2962533/123‑1 (MQ=255)
                                                                                                                      aatttaaaaat‑‑aaaaaa‑AAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:1645183/123‑1 (MQ=255)
                                                                                                                       attaaaaatt‑‑aaaaaATAAAAAAAAAAAAATACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:2253361/127‑1 (MQ=255)
                                                                                                                          taaaaat‑‑taaaaa‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata       <  2:1833793/127‑1 (MQ=255)
                                                                                                                               |                                                                                                                                  
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AT‑CTT‑CACAAATAAAAAAAAAACAATCCCCTTTTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202370‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑