Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2520T.60.1% 106.9 / inf 345intergenic (+216/‑326)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (53/74);  new base . (148/43);  total (201/144)
Fisher's exact test for biased strand distribution p-value = 1.63e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 454 total aligned reads displayed.

AATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165125‑165378
                                                                                                                                 |                                                                                                                               
      tattttCAATAATTTATAGCACTTGTATTAATTAGTAATAAAATAAAAATATTATCTTTTTATA‑TAATTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttt                                                                                                                           <  2:2382626/125‑1 (MQ=255)
      tAGGTTCATTAATTTATCGCACTTGTATTTATTACTAATAAAATAATAATTATATATTTTTTTA‑TATTTTTTTTAAATTCAAA‑TTTTTAAAAAATTAATTTGCACTTGTAAAAAATACCttttttttt                                                                                                                           <  1:1001110/128‑1 (MQ=255)
        tttaaaTTAATTTTTCTCAATTTTATTAATTATTAACAAAAAAAAAATATTATATTTTTATA‑TATTTTTTTTATATGAAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCttttttttttt                                                                                                                         <  1:873459/123‑1 (MQ=255)
             ttttaattATTGCACTTTTATGTATTAGTAATAATATAAAACTATTATGTTTTTATA‑TATTTTTTGTATATTCAAA‑TTTTTAAAAAATTAAATTTAACTTGTAAAAAATAGCttttttttttttttta                                                                                                                    <  2:1365683/122‑2 (MQ=255)
             aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttt                                                                                                                    >  2:981985/1‑128 (MQ=255)
              tttaTTTATCGCACTTGTATGAATTAGTAACTAAATAAAACTATTATCTTTTTAGA‑TATTTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGGgttttttttttttttta                                                                                                                   <  2:3186953/125‑2 (MQ=255)
               tAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttt                                                                                                                  >  2:2614787/1‑128 (MQ=255)
               tAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttta                                                                                                                  >  1:650788/1‑127 (MQ=255)
                  tttATCTCAATTTTATTAATTATTAATAAAATAAAACTATTATCTTTTTATA‑AATTTTTTGTATATTCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtttttttttttttttataatg                                                                                                               <  2:2246823/128‑7 (MQ=255)
                  tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataat                                                                                                               >  2:2109351/1‑123 (MQ=255)
                  tttATAGAACTTTTATGAATTATTAATAAATTAAAACTATTATTTTTTTATT‑TATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTTAAATTGTTAAAAATACCtttttttttttttttataatg                                                                                                               <  1:1411016/128‑7 (MQ=255)
                   tttaagCACTTTTTTTAATTATTAAGAAAATAAAAATATTTTGTTTTTTTA‑TATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAAATTTAACTTTTAAAAAATAGCtttttttttttttttataatgg                                                                                                              <  1:1829843/123‑8 (MQ=255)
                   ttATTGCACTTGTATTAATTAGTAATTAACTAAAAAT‑TTATCTTTTTTTT‑TATTTTTTGTATATTCAAA‑TTTTTAAAAAATTAATTTTTACTTTTAAAAAATAGCtttttttttttttttataatgga                                                                                                             <  1:70276/128‑9 (MQ=255)
                    tataGCAATTGTTTGTATTATTAATAAAATATAAAAATTATATTTTTATA‑TATTTTTTTTATATTCAAA‑TTTTTAAAAAATTTATTTTTACTTTTTAAAAATAGCttttttttttttttttataatgg                                                                                                             <  1:1745169/128‑8 (MQ=255)
                     aTCGCCCTTGTATGAATTAGTAATAAAAAAAAAATATTATATTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAAATAATTTTAAATTTTAAAAAATATCttttttttttttttttataatgga                                                                                                            <  1:1696364/128‑9 (MQ=255)
                     aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTCTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttttttattgtat                                                                                                            >  1:635765/1‑121 (MQ=255)
                       cGCACTTGTATGAATTAGTAAGAAACTAAAAATATTATATTTTTAGA‑TATTTTTTTTATATCCAAA‑TTTTAAAAAAATTAATTTGAAATTTTAAAAAATAGAttattttattatttaataatttaata                                                                                                          >  2:559890/1‑116 (MQ=255)
                            ttGTATTAATTAGTAATTAAATTAAAATTTTATATTTTTATT‑TATTTTTTTTTTATGAAAT‑TTTTTAAAAAATTTATTTTATATTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:1783996/128‑1 (MQ=255)
                             tttattaattattaatAAACTAAATATATTATCTTTTTTTA‑TATTTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:835946/126‑1 (MQ=255)
                             tgttttaaTTAGTTAGAAAATAAAAATATTTTCTTTTTATT‑TTTTTTTTGTATTTGTAAA‑TTTTTAAAAAATTAATTTGTACTTGTATAAAA‑‑‑‑‑TTGGTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  2:1305089/122‑1 (MQ=255)
                             tGTTTGAATTTTTAATTAAATAAAACTATTATATTTTTATT‑TATTTTTTGTATATGAAAA‑TTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:578191/128‑1 (MQ=255)
                              tttttaaTTATTAATTAAATAAAACTTTTTACTTTTTATT‑TATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:785937/123‑1 (MQ=255)
                              tttttaaTTATTAATAAAATAAAAATTTTATATTTTTATA‑TATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  1:116541/123‑1 (MQ=255)
                              ttATGAATAAGATAGTAAATAAAACTATATACTTTTTTTA‑TAATTTTTTTAAATGCAAA‑ATTTTAAAAAATTTATTTTAACTTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  2:1676936/127‑1 (MQ=255)
                              gtttttattattAATAAAATAAAAATATTATTTTTTTAGA‑TTTTTTTTTTATATTTAAA‑TTTTTAAAAAATTTATTTTTACTTGTTAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:2527050/122‑1 (MQ=255)
                               tttttattattAATTAAATAAAACTTTTATATTTTTATT‑TTTTTTTTTTATATTCAAA‑TTTTTAAAAAAATAATTTTAAATTTTTAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:3183336/123‑1 (MQ=255)
                                 ttaatttttAAGAAAAAAAAAATTTTTTTTTTTTATA‑TTTTTTTTGTATTTTCAAA‑TTTTTAAAAAATTAATTTGAAATTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTa                                                                                            <  1:2105554/120‑1 (MQ=255)
                                 tGAATTATTAATAAACAAAAAATATTATATTTTTATA‑TATTTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtttt                                                                                             <  1:2974994/128‑1 (MQ=255)
                                 agtaTTAGTAATAAACTACAACTTAAATATTTTTAGA‑TAATTTTTGTATTTTAAAA‑ATTTTAAAAAATTAAAATTAACTTTGAAAAAATA‑‑‑‑TCCTTTTTTTTTTTTTTATAATGGAAATATAAATTTTa                                                                                            <  2:827626/125‑1 (MQ=255)
                                    attattAATAAACTAAAACATTTATCTTTTTTTA‑TATTTTTTGTATATTCAAA‑TTTTTAAAAAAATAATTTTAACTTGTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  1:419775/128‑1 (MQ=255)
                                     ttACTAATAAATAAAAACTATTATTTTTTTAGA‑TATTTTTTGTATATGTATT‑TTTTTAAAAATTTAATTTTAAATTTTAAAAA‑‑‑‑‑TTATCCTTTTTTTTTTTTTATAATGGTAATATAAATTTTAGGTAt                                                                                       <  2:773405/128‑1 (MQ=255)
                                      tAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGATAATTAAAtttttgtt                                                                                         >  1:2120916/1‑124 (MQ=255)
                                         tAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTatttttt                                                                                      >  1:2543549/1‑122 (MQ=255)
                                           tgAAACATAAACTTTTATATTTTTAGT‑ATTTTTTTTTATTTTGAAA‑TTTTTAAATAATTAATTTTTAATTGTTAAAAAT‑‑‑TTGTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:1225313/127‑1 (MQ=255)
                                           ataaaataaaattaTTTTTTTTTTTTA‑TATTTTTTTTATATTAAAA‑TTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:953944/126‑1 (MQ=255)
                                           ataaaaaaaaaataTTTTATTTTTATA‑TATTTTTT‑TAAATTTAAATTTTTTATAAAAATTATTTTAAATTGTAAAAAATA‑‑‑ATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:895724/121‑1 (MQ=255)
                                                  taaacatatttttttttATT‑TATTTTTTTTTTATTTAAATTTTTAAAAAAATAAATTTTAA‑TTTTAAAAAATAG‑‑‑GTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTCGTTGT‑CTa                                                                           <  1:1347285/116‑1 (MQ=255)
                                                    aaaattttattttttATATTATTTTTTTTATATTCAAA‑TTTTTTAAAAATTAATTTTTAATTTTAAAAAATTGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAg                                                                         <  1:527494/118‑1 (MQ=255)
                                                     aatattttatttTTATA‑TTTTTTTTTGTTATGCAAA‑TTTTTTAAAAATTAATTTTAAATTTTAAAATATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTa                                                                       <  1:1617777/126‑1 (MQ=255)
                                                      ctaTTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTTAAATATAAATTTTAGTTATttttttttatattt                                                                         >  2:187016/1‑120 (MQ=255)
                                                       tattatCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTAGTTATTTTTTTTT‑ATAATTa                                                                       >  2:1740386/1‑128 (MQ=255)
                                                       tattatCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTTTTTTTTTTT‑ATAATTaaat                                                                    >  1:285960/1‑125 (MQ=255)
                                                       tattatATTTTTATA‑TATTTTTTTTTTTTTAAAA‑TTTTTAAAAAATTAAATTTAAAATTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATc                                                                     <  2:2190739/128‑1 (MQ=255)
                                                         ttatCTTTTTGGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTAATAATTGAAATTTAAATTTTAGGTATTTTGTTTT‑ATAATTTTCTaa                                                                  >  2:694240/1‑128 (MQ=255)
                                                              tttttATA‑TATTTTTTTTTTATTAAAA‑TTTTTAAAAAATTAATTTTAAATTTTTAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTaaaaaaa                                                             <  1:3096888/128‑1 (MQ=255)
                                                               ttttATA‑AATTTTTGTTAT‑TGAAAA‑TTTTTAAAAAATAAAATTGAAATTTTAAAAATAAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATa                                                           <  2:2930538/128‑1 (MQ=255)
                                                                tttAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTAGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTAATAATTGAAATATAAATTTTAGATAATTTGTTGT‑ATAAATATATaaaaataa                                                            >  1:1443285/1‑125 (MQ=255)
                                                                 tttattttttatttGTATATTCAAA‑ATTATATAAATTTATTTTTCTCTTGTAAAAAATTAC‑‑‑TTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGTTATTTTGTTGT‑CTAAGTATCTaaaaaaa                                                             <  1:2376972/117‑1 (MQ=255)
                                                                 ttAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTT‑‑‑‑‑TAATGTAAATAAAAAATTTATTTATTTTTTTTT‑ATAATTATATAAAAAAATat                                                          >  1:1725977/1‑127 (MQ=255)
                                                                  tAGA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATTTATTTTTTTTT‑ATAATTTTATAAAAAAATat                                                          >  2:1141539/1‑127 (MQ=255)
                                                                   tagtaatTTTTTTTATATTGAAA‑TTTTTAAAAAATTAATTTTAAATTGTTAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATa                                                           <  2:1521848/123‑1 (MQ=255)
                                                                    gA‑TATTTTTTGTTTTTTCAAA‑TTTTTTAAAAATTAATTTGTAATTTTAAAAAA‑A‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGa                                                         <  1:2611392/128‑1 (MQ=255)
                                                                    gA‑TATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTT‑ATAATTATATaaaaaaaaata                                                         >  2:2773409/1‑124 (MQ=255)
                                                                      ttatTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAg                                                      <  2:412444/127‑1 (MQ=255)
                                                                        tttttttttttATTAAAA‑TTTTTAAAAAATTAATTTTTATTTTTAAAAAA‑A‑‑‑TTTTTTTTTTTTTTTTTTATAATTTAAATATAATTTTTTGTTTTTTTTTTGT‑TTAATTATATAAAAAATTATaatga                                                     <  1:163382/127‑4 (MQ=255)
                                                                        atTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATTAAAATATAAATTTAAGTAATTTTTTTTT‑ATAATTATATAAAAAAATATaaataa                                                    >  2:2038549/1‑125 (MQ=255)
                                                                           ttttttttATGTAAA‑TTTTTAAAAAATTTTTTTTAAATTTTAAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAGTTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:1537178/128‑1 (MQ=255)
                                                                           ttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGGTATTTTTTTTT‑ATAATTATATAAAAAAATATaaatta                                                    >  2:1995777/1‑125 (MQ=255)
                                                                           ttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTATTTATTTTTTTTT‑ATAATTTTATAAAAAAAAATAAAGaaaa                                                  >  1:2225253/1‑128 (MQ=255)
                                                                            tttttttatTCAAA‑TTTTTTAAAAATTAATTTTTAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:2826815/122‑1 (MQ=255)
                                                                            tttGTATTTTAAAA‑TTTTTAAAAAATTAATTTTTAATTTTAAAAAAT‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  2:162308/128‑1 (MQ=255)
                                                                             ttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTGT‑CTAATTTAAAAAAAAAATAAAAAGGaaaa                                                 >  1:2683794/1‑128 (MQ=255)
                                                                              tGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTT‑‑‑‑‑‑TAATGTAAATAAAAATTTTAGTTTTTTTTTTTA‑AAAATAAACTAAAAAAATAAAAAGAaaaaaaaa                                             >  1:1588983/1‑126 (MQ=255)
                                                                              tGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATAAAATTTTTATTTATTTTTTTTT‑AAAATTATATAAAAAAATAAAATATaaaaaa                                               >  2:2339608/1‑128 (MQ=255)
                                                                               gTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGTAAATATAAATTTTAGGTATTTTGTTGA‑TAAATTATTAAAAAAAATTAAAAGTaaaaaa                                               >  1:3211547/1‑128 (MQ=255)
                                                                                tataTGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTAAAATTTAATTATAAATTTTAGTTATTTTTTTTT‑AAAATTATATAAAAAAATAAAAATAAAAAAatat                                            >  2:1916273/1‑128 (MQ=255)
                                                                                   atGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTGT‑ATAATTATATAAAAAAATATAAAGGAAAAAAtttttt                                         >  1:276101/1‑126 (MQ=255)
                                                                                    tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTT‑‑‑‑TAATGGAATTATAAATTTTATTTATTTTTTTTT‑ATAATTTTCTAAAAAAATAAAAAGTAAAAAATAtttt                                         >  1:2155526/1‑126 (MQ=255)
                                                                                    tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTTT‑CTAATTTAATAAAAAAATATAAATAaaaaaaattttt                                         >  2:644359/1‑122 (MQ=255)
                                                                                    tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTAAAATTTAAAATA‑AAATTTTAAGTATTTTGTTGA‑AAAATTATATAAAAAAATAAATAGAAAAAAattattta                                        >  1:2180273/1‑122 (MQ=255)
                                                                                    tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTAAAATGTAAATTTAAATTTTAGTTTTTTTTTTGA‑ATAATTATATAAAAAATTATAAAGTAAAAAATATtttt                                        >  2:1813214/1‑128 (MQ=255)
                                                                                     gCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATATATTTTTTTTA‑ATAAGTTAATAAAAAAATAAAAAATAAAAAATATtttt                                        >  2:1196768/1‑128 (MQ=255)
                                                                                       aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTT‑‑‑‑TAATGGTAATTTTAATTTTTTGTATTTTGTTGT‑ATAATTTTTTAAAAAAATATAAATGAAAAAAAATTGTTaa                                      >  2:287793/1‑128 (MQ=255)
                                                                                       aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTAAGTTATTTTGTTTT‑ATAATTATCAAAAAAAAAATAATGTAAAAAAAATTATTaa                                      >  1:1186826/1‑128 (MQ=255)
                                                                                       aaa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTAAAATTGAAATATAAATTTTAGGAATTTTTTTGT‑AAAATTATAAAAAAAAAAATAAAGGAAAAATAATTGTTaa                                      >  1:1958461/1‑128 (MQ=255)
                                                                                              ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGGTATTTTGTTGT‑ATATTTTTATAAAAAAATAAAAAGTTAAAAATATTGTTTAAATTat                                >  2:246551/3‑127 (MQ=255)
                                                                                               taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTATTTATTTTTTTTT‑ATAATTATATAAAAAAATTAAAAGTAAAAAATATTTTTAAAATTaa                                >  2:1248356/2‑128 (MQ=255)
                                                                                                   aaattaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAATTATAAATTTTATGTTTTTTTTTGT‑ATATTTATGTAAAAAAATATAAATGAAAAAAAAATGTTAAAAGTataaatta                          >  1:2355838/2‑121 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTAT‑‑TAATGTAAA‑ATAATTTTTAATTATTTTATTTT‑TTAATTTATTTAAAAAATA‑AAATAAAAAAATAATATTaataattataaaaa                          >  1:1390802/1‑116 (MQ=255)
                                                                                                    aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTAATAATGTAAATAAAAATTTAAGTTATTTTGTTTT‑ATAATTATAAAAAAAATAAAAAAGTAAAAAATATTTTTAAAATAAataata                           >  2:1555296/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGT‑ATAAGTATATAAAAAAATATAAATGAAAAAATATTGTTAAAATTAATACTa                           >  2:1069838/1‑128 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATGTATTTTTTTTA‑ATAAGTAAATAAAAAAATAGAAAGGAAAAAATATTTTTaaaataaaaaataaa                         >  1:728464/1‑117 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATTAAAATTTAAGTTATTTTTTTGA‑CAATATAACTAAAAAAAAAAAAAGTAAAAAATATTATaaaatatataaataaa                         >  1:2039925/1‑116 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTATTATTTTTGTTGT‑ATAATTATATAAAAAAATAAAAAGTAAAAAAAATTTTTAAaataaataaaaaa                         >  1:2900794/1‑123 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAATAATAAATTTTTGTTATTTTGTTTT‑ATAATTATATAAAAAAAAATAAAGGAAAAAATATTTTTTAAATTAATaattaa                         >  1:2251867/1‑123 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAAATTTTAGTTATTTTTTTTA‑ATATTTTTATAAAAAAATTTAATGGAAAAAATATTTTTAAATTTATTACTaaa                         >  2:455268/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTA‑AATGGAAATTTAATTTTAAGGTATTTTTTTTA‑ATATGTATATAAAAAAATTTAATGGAAAAAATTTTTTTAAAAGTAATATTaaa                         >  2:886141/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTA‑AATTAAAAAAAAAATTTTTGGT‑TTTTTTTGTAATAAGAAAATAAAAAAA‑ATAAATCAAAAAAAATTTGTAAAAGTTATACTAAAat                       >  1:2007166/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTATGTATTTTTTTGT‑ATAAATATATAAAAAAAAAAAAATGAAAAAATATTTTTAAAATTAAAAATaaaa                        >  1:3021243/1‑128 (MQ=255)
                                                                                                                   aatttttaaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAAt               <  1:490397/116‑1 (MQ=255)
                                                                                                                    tttttaaaaattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATTGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg              <  1:1248356/117‑1 (MQ=255)
                                                                                                                    aattttaaaaaatttgttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg              <  1:1065882/116‑1 (MQ=255)
                                                                                                                         aaatatattttttttttttttttttATAATGGAAATATAAATTTTATGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat         <  2:1429834/121‑1 (MQ=255)
                                                                                                                         aaaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaat         <  2:3057595/122‑1 (MQ=255)
                                                                                                                          aaaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt        <  1:2469979/123‑1 (MQ=255)
                                                                                                                           aatttatttttttttttttttttATTATTGAAATATATATTTTAGGTATTTTGTTGT‑ATAAGTTTCTAAAAAAATAGAAAGGAAATAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  1:2261941/122‑1 (MQ=255)
                                                                                                                           aaaatttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑ATAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  1:1906048/124‑1 (MQ=255)
                                                                                                                            atagctttttttttttttttttA‑ATTGTAAATTAAAATTTTAGGTTTTTTTTTTT‑ATAATAAAATAAAAAAAAATAATGTAAAAAATTTTTTTAAATTTAATAATAAATTATTTTAATTTTATTTaaa     >  2:169968/6‑128 (MQ=255)
                                                                                                                             tttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTaaa     <  2:2819309/126‑1 (MQ=255)
                                                                                                                              ttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTaaaa    <  2:3023300/127‑1 (MQ=255)
                                                                                                                                 |                                                                                                                               
AATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGA‑TATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGT‑CTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165125‑165378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑