BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	439 (0.380)	313 (0.220) +ATAT	73/188	12.1	35.0%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	637 (0.430)	313 (0.220) +ATAT	73/188	12.1	35.0%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 973 total aligned reads displayed.

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑a                                                                                                                                 >  2:1928070/1‑128 (MQ=255)

gAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑a                                                                                                                                 >  2:2911960/1‑128 (MQ=255)

 aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑at                                                                                                                                >  2:1489208/1‑128 (MQ=255)

  aaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAATCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ata                                                                                                                               >  2:2771937/1‑128 (MQ=255)

    cTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atata                                                                                                                             >  1:1026073/1‑128 (MQ=255)

      tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatata                                                                                                                           >  2:2680089/1‑128 (MQ=255)

            tGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatata                                                                                                                     >  2:728533/1‑128 (MQ=255)

             gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatat                                                                                                                    >  2:1418902/1‑128 (MQ=255)

              tAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatata                                                                                                                   >  2:318142/1‑128 (MQ=255)

               attttttatttttATTTTTAATAAAAAATTTTAATAAAAATTTTTTTTTTAAAAAAAATATTTTATGAAATTAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatat                                                                                                                  <  1:872640/119‑1 (MQ=255)

                 ttttAAGTTTAATTTTTAATAAATATTATATATAAAAATTTTATTTTTAAAATAAATATTTTAGTAAATGAATCAAATCAAAAAACTACATATTAAATATAGAGTTAAT‑‑T‑‑‑‑atatatatatatatatat                                                                                                                <  1:2736971/125‑1 (MQ=255)

                 ttGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatat                                                                                                                >  2:2652212/1‑128 (MQ=255)

                   gTAATTTTCATTTTTAATATATATTATAAATAAAAATTTTATTTTTAAAATAAATATTTTTTTAAATGAATCAAAGCAAAAAAATCCATATTACATATAGAGTTAAT‑‑T‑‑‑‑atatatatatatatatatat                                                                                                              <  1:2321490/128‑1 (MQ=255)

                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatat                                                                                                              >  1:1924819/1‑128 (MQ=255)

                   gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatat                                                                                                              >  2:1884111/1‑128 (MQ=255)

                    tAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatata                                                                                                             >  2:211283/1‑128 (MQ=255)

                    atatttttATTTTTAATAAATAATATAAAAAAAAATTTTTTTTTTAATAAATATATTTTATTAATTTACTAAAAGAAAAAATCTATATAAAAAATATAGATTTATT‑‑T‑‑‑‑atatatatatatatatatata                                                                                                             <  1:3183183/124‑1 (MQ=255)

                     aatttttATTTTTAATAAATATTATATATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAATCAAATAAAAAACCTCAATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                            <  1:2530143/125‑1 (MQ=255)

                     aaGTTTCATTTTTAATAAATATTAGAAATAAATATTGTATTTTTAAAATAAATATTTTATTAAATGAAGCAAACCAAAAAACTACATATTACCTATAGAGTTAAA‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                            <  2:862162/128‑1 (MQ=255)

                     aaGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatat                                                                                                            >  1:2441541/1‑128 (MQ=255)

                        attttttttttATATATATTATAAATAAATATTTTTTTTTTAAAATATATATTTTTTTTAATCACTCAAAAATAAAAAAACCATATAATATATATAGTTAAT‑‑T‑‑‑‑atatatatatatatatatatatata                                                                                                         <  1:2241889/123‑1 (MQ=255)

                         ttaaTTTTTAATATATATTAGAAATATAAATTGTATTTTTAAAATAAATATTTTAGGATATGAAGCAAATAAAAAACCTCAATATTATATATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatat                                                                                                        <  1:1105666/125‑1 (MQ=255)

                          ttatttttttaaaataTTTTATATATAAATTTTTTTTTTTAAAAAAATATTTTTTTATATTATTAAAATATAAAAAATCTATATTAAATATATAGTTAAT‑‑t‑‑‑‑atatatatatatatatatatatatata                                                                                                       <  1:1001122/117‑1 (MQ=255)

                          tCATTTTTAATAAATATTAGATATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatgca                                                                                                       <  1:516783/128‑4 (MQ=255)

                           cATTTTTAATATATATTAGAATTATAAATTTTATTTTTAAATTAAATATTTTAGGAAATGAAGAAAATCAAAAACCTCCATATTACCTATATAGTTTAT‑‑T‑‑‑‑atatatatatatatatatatatatatgc                                                                                                      <  2:2398338/128‑3 (MQ=255)

                            aTTTTTAATAAATATTAGAAATAAAAAATTTATATATAAAATAAATATTTTATGTAATTAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATg                                                                                                     <  2:2428572/128‑1 (MQ=255)

                              atttAATAAATATTATAAAAAAAAAATGTATTTTTAAAATAAATATTTTATGAAAATAAGCAAATAAAAAACCTCCATATTACCTATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAg                                                                                                 <  2:1019173/127‑1 (MQ=255)

                               tttAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCaa                                                                                                  >  1:924512/1‑128 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatatatatgcaa                                                                                                >  2:901510/1‑122 (MQ=255)

                                 taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑atatatatatatatatatatatatataaccacgc                                                                                                >  1:2766201/1‑121 (MQ=255)

                                  aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCg                                                                                               >  2:1539176/1‑128 (MQ=255)

                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGAt                                                                                             <  2:2999194/128‑1 (MQ=255)

                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑at                                                                                                                                >  1:2111416/1‑91 (MQ=255)

                                      aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGc                                                                                         >  1:1860482/1‑128 (MQ=255)

                                       atatTAGATATAAATATTTTATTTTTAAAATAAATATTTTATTAAATTAATCAAATCAAAAACCACAATATTAACTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATc                                                                                            <  1:1815225/128‑1 (MQ=255)

                                       atatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATAT‑T‑CAAGCTATCAGCa                                                                                        >  2:2192513/1‑128 (MQ=255)

                                         atTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGTAAAAGAAGCAAATCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCa                                                                                        <  1:175512/128‑1 (MQ=255)

                                          ttAGAAATAAAAAATGTATATTTAAAATAAATATTTTAGGAAATGAATAAAATCAAAAAACTCAATATTAACTATAGAGATAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCAt                                                                                       <  2:2238144/128‑1 (MQ=255)

                                            ataaaTAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAATCAAATAAAAAACATCCTTATTAACTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  1:1266997/126‑1 (MQ=255)

                                             gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCATCATAAAATgg                                                                                >  1:2853305/1‑128 (MQ=255)

                                              ataTAAAAATTTTTTTTTTATAATAAATATATTTTTATATTAATCAAAGAAAAAAACTCAATATTAAATATATAGTTAATTAT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                     <  1:217919/126‑1 (MQ=255)

                                              aaaTATAAATTTTATTTTTAAAATAAATATTTTAGTAAATGAATAAAAGAAAAAACATCAATATTAACTATAGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATg                                                                                 <  1:1218016/128‑1 (MQ=255)

                                                  aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGa                                                                             >  1:629509/1‑128 (MQ=255)

                                                  aaaaaTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGaaa                                                                           >  2:1175465/1‑128 (MQ=255)

                                                   aaatTTGTATTTTTAAAATAAATATTTTAGGATATGAATAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                          <  1:2366066/128‑1 (MQ=255)

                                                      aTTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAACACCTCCATATTACCTATAGAGTTAAT‑‑C‑‑‑‑ATATATATATATATAAATATATATATATTCGAGCGATGAGCTAAAGATAGTGata                                                                           >  1:1400064/1‑126 (MQ=255)

                                                        tGTATTTTTAAAATAAATATTTTATGAAATGAAGAAAAGAAAAAAACTCCATATTACCTATATAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAAtt                                                                         <  2:2727479/128‑1 (MQ=255)

                                                             ttttAAAATAAATATTTTAGTAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCTATCGATCAAAATAAAATGTTGAAATTTatat                                                                    >  1:1639464/1‑128 (MQ=255)

                                                              tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATc                                                                   >  2:1834681/1‑128 (MQ=255)

                                                               ttAAAATAAA‑AATATAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:2803801/128‑1 (MQ=255)

                                                                tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                 >  2:314541/1‑128 (MQ=255)

                                                                  aaataaatATTTTAGGTAAACAAGCACAACAAAAACCACCATAATCACTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                               <  1:2000528/128‑1 (MQ=255)

                                                                   aataaataTTTTTTGAAATTAATAAAAGAAAAAATATCAATATTAACTATAGAGTTAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                              <  2:1787166/128‑1 (MQ=255)

                                                                       aataTTTTATGAAATGACGAAAATAAAAAACCTCTATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                      <  1:2706877/128‑1 (MQ=255)

                                                                       aataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGAGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                        >  1:1486923/1‑128 (MQ=255)

                                                                       aataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATAACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                    <  1:1566561/128‑1 (MQ=255)

                                                                        atatTTTTTGAAATTAATAAAATAAAAAACATACATATTAACTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                             <  2:1270797/128‑1 (MQ=255)

                                                                        atatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGAAAGATATCATCATAAAATTGAGAATTATAGATCTCTGTTgg                                                           >  1:1369355/1‑128 (MQ=255)

                                                                         tataTTAGGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                        <  2:573919/128‑1 (MQ=255)

                                                                          atattAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCtt                                                       <  2:621834/125‑1 (MQ=255)

                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAATTTTAGATATGATTTTGTCTTat                                                     >  2:1739955/1‑127 (MQ=255)

                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTaa                                                     >  2:1140819/1‑128 (MQ=255)

                                                                            tttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGAGAATTTTATATATGATTTGGTCTTaa                                                     >  1:414915/1‑128 (MQ=255)

                                                                                ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCGCTCAGCATAATATTGAGAAATTTAGATCTGAGTTGGTCTTatagtt                                                 >  2:783692/1‑123 (MQ=255)

                                                                                ggAAATGAAGCAAAGAAAAAACATCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                               <  2:2067094/128‑1 (MQ=255)

                                                                                  aaaTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTTAT‑‑GAT‑‑ATATATATATATATATATATATATATATGAAAGCTATCAGAATAAAATTGTTAAAATTAGATCTTAGTTGGTCTTAAAttt                                                 >  1:598921/1‑128 (MQ=255)

                                                                                    aTGAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtttt                                         <  1:3083503/128‑1 (MQ=255)

                                                                                     tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGTTCTTAAATTTGTAGttttt                                        >  2:3042157/1‑128 (MQ=255)

                                                                                         gaaaagcaaaAAACTACATATAAACTATAGATTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                        <  1:361027/126‑1 (MQ=255)

                                                                                          caaagcaaaAACCTCCATATTATCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTGGATCTGAGTTGTTCTTATATTTGTAGatttat                                       >  2:309450/1‑126 (MQ=255)

                                                                                          caaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGAGATCAGCATAAAATGGTTAAATTTAGATCTGAGTTTGTCTTAAATTTTTAGTTttta                                       >  1:17143/1‑128 (MQ=255)

                                                                                          caaagcaaaAACCTCCATATTAACTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                     <  1:970345/128‑1 (MQ=255)

                                                                                           aaagcaaaAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCGATCAGCATAAAATGGTGAAATTTATATATGAGATAGTCTTAAATTTGTAGATtttat                                      >  2:1361279/1‑128 (MQ=255)

                                                                                           aaagaaaaAAACTCAATATTAACTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                      <  2:513946/128‑1 (MQ=255)

                                                                                               caaaAACCTCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATTAAATCTATCATCATAATATGGTGAAATTTATATCTTAGTTTATCTTATAtttttttttttttt                                      >  1:750624/1‑126 (MQ=16)

                                                                                                  aaaCCTCAATATTACCTATAGTGTTACT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATAAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGttt                             <  1:2483096/128‑1 (MQ=255)

                                                                                                   aaCCTCCATATTATCTATAGAGTTAAA‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGtt                              <  2:2293150/128‑1 (MQ=255)

                                                                                                   aaCCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATCCAAGCTATGAAAAAAAAATGGAGAATTATAGATCTGAGTTTCTATTATATTTATATTTTTTATTtatatta                              >  2:1073809/1‑125 (MQ=255)

                                                                                                      cTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATGTATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  2:2809207/128‑1 (MQ=255)

                                                                                                      cTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGTTGAAATTTATATCTGAGTTTGTCTTAAATTTTTTGTTTTTATTTATAGTTTATATAg                       >  2:2344827/1‑128 (MQ=255)

                                                                                                       tCCATATTACCTATAGAGTTAAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGCTCAGCATAAAATGGTGAAATTTAGATCTGTGTTTGTCTTATATTTGTAGTTTTTATATATAGtt                              >  2:665372/1‑128 (MQ=255)

                                                                                                       tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtata                          >  1:1164300/1‑128 (MQ=255)

                                                                                                       tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATAAAAAATAGAAAAACATAAAATTGTTAAATTTAGATCTGAGTTTATATAAAATTTTTATTTTATATTTATAGtatata                          >  1:3141667/1‑128 (MQ=255)

                                                                                                       tCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATA‑AT‑CGAGCGATCAGCATAATATGGTGATATTTAGATCTGAGTTGATATTATATTTGTAGTTTTTATTTATATTTTATaaa                        >  2:1614578/1‑128 (MQ=255)

                                                                                                        agataatcacTATATAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                           <  2:1677052/119‑1 (MQ=255)

                                                                                                          aaattaattataGAGTTTTT‑‑G‑‑‑‑ATATATATATTTATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                       <  1:806183/120‑1 (MQ=255)

                                                                                                            attatatataGAGTTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaa                   <  1:2994705/122‑1 (MQ=255)

                                                                                                            atTACCTATAGAGTTAAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata                 >  2:2593177/1‑128 (MQ=255)

                                                                                                            atTAACTATAGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGAGCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                       <  1:1311356/128‑1 (MQ=255)

                                                                                                             ttACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCTATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTTTAGTTTTTATTTATAGTTTATATAGTta                    >  2:377360/1‑128 (MQ=255)

                                                                                                              tACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATATAGTtaa                   >  2:1302981/1‑128 (MQ=255)

                                                                                                                ccTATAGAGTTAAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGATAAATATAGATCCGAGTTGGTATTAAATTTTTAGTTTTTATTTATAGTTTATAAATTTattaat               >  1:703124/1‑128 (MQ=255)

                                                                                                                ccTATAGAGATAAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaata                 <  2:446672/128‑1 (MQ=255)

                                                                                                                    taGAGTTAAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTTAAATTTAGATCTGAGTTGGTCTTAAATTTTTTGTTTATATTTATAGTTTATAAATTTaataat               >  1:2913743/1‑128 (MQ=255)

                                                                                                                       agatAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGa          <  2:2536958/125‑1 (MQ=255)

                                                                                                                            aT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTATAttttt     >  2:2852256/1‑128 (MQ=255)

                                                                                                                             t‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCGATCAGCAAAAAATGGTGAAATATATATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATATTTTATATAGTTAATAATTTAGATTTTTa    >  1:2605809/1‑128 (MQ=255)

                                                                                                                               tgatatatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTATTTAATTTGTATTTTTTATTTATAGTTTATAAATTTAATAATATATAtt        >  1:551703/7‑128 (MQ=255)

                                                                                                                                    tatatatatatatatatatatatatatatTCAAGCGATCAGCATAAAATGGTGAAATTTAGATATGAGTTTTTCTTAAATTTTTATTTTTTATTTATATATTATAAATTTAATAATTTATATATTTaa   >  1:2041660/2‑128 (MQ=255)

                                                                                                                                    tatatatatatatatatatatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTaa   <  2:1986398/127‑1 (MQ=255)

GAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTTAAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAAT  >  CP016816/437754‑438008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.