BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	311,150	0	A	.	66.4%	2603.9 / inf	2208	intergenic (‑73/‑241)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand): ref base A (500/237); new base . (726/733); total (1227/981)
Fisher's exact test for biased strand distribution p-value = 6.24e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.17e-03

Only 100 of 3018 total aligned reads displayed.

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

   cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTCCACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATGCATAACATATATAACCTACAGTCAT‑‑tatat                                                                                                                                >  1:2988253/1‑128 (MQ=255)

   cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatat                                                                                                                                >  1:1256438/1‑128 (MQ=255)

      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatata                                                                                                                             >  1:8779717/1‑128 (MQ=255)

      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatata                                                                                                                             >  1:2230689/1‑128 (MQ=255)

      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatata                                                                                                                             >  2:2345482/1‑128 (MQ=255)

         taataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatat                                                                                                                          >  1:7136566/1‑128 (MQ=255)

         taataaCTAATCAAAATTAACATAAAATTGTAATTAACATTTTCATTTTACACTCACATTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑tatatatatat                                                                                                                          <  2:6634647/128‑1 (MQ=255)

            taaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                       <  2:2998755/128‑1 (MQ=255)

              aCTAATAAAAATTAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATAATTTTTACATACTATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatata                                                                                                                     <  2:3177424/128‑1 (MQ=255)

               cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatat                                                                                                                    >  2:6047177/1‑128 (MQ=255)

               cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑taaatatatatatatat                                                                                                                    >  1:10362570/1‑128 (MQ=255)

                tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                   >  2:741559/1‑128 (MQ=255)

                tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                   >  2:9759902/1‑128 (MQ=255)

                tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTAAACACCCCATATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatataaaaa                                                                                                                   >  1:3577404/1‑124 (MQ=255)

                 aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatat                                                                                                                  >  1:1000916/1‑128 (MQ=255)

                 aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatat                                                                                                                  >  2:2710304/1‑128 (MQ=255)

                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatata                                                                                                                 >  2:3887060/1‑128 (MQ=255)

                   taataattttcTTATAATTTTAATTAAATTTTTAATTTTAAACACCCAATATTAAAAAATAAAATACTTTTTACATAATATTAAAAAGATATATATCATTCATTCAT‑‑tatatatatatatatatatat                                                                                                                <  1:6432732/118‑1 (MQ=255)

                   tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                                >  2:1441870/1‑128 (MQ=255)

                      aaaTGAACTTAAAATTGTTATTAACTTTTTAATTTTATATACATATTATTAAAAAATAAAATACTTGTTTCATATGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatataatgc                                                                                                             <  1:5861931/128‑5 (MQ=255)

                       aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatat                                                                                                                    >  2:9048711/1‑120 (MQ=255)

                         tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatg                                                                                                          >  1:8651158/1‑125 (MQ=255)

                            aattAAAATTGTAATTAACTTTTTCATTTTAAAAACAAAATATTAAAAAATAAAATAATTGTTACATAATATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                       <  2:632120/126‑7 (MQ=255)

                             cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataaattgctat                                                                                                      >  1:9659579/1‑122 (MQ=255)

                              ttAAAAATTTAATTATATTTTTCTATATAAACACAAAATATTAAAAAATATAATACTTGTTAAATACTATTAAAAAAATATATAAAATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCaa                                                                                                   <  1:7019157/128‑1 (MQ=19)

                               tAAAATTTTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAatat                                                                                                <  1:9122224/128‑1 (MQ=255)

                                aaaaTTTTTATAAAATTTATAATTTTAAACACCCCTTATTATAAAATAATATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑T‑T‑TATATATATATATATATATAT‑‑AATGCAATATg                                                                                               <  2:9209681/128‑1 (MQ=255)

                                aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATAAAata                                                                                                 >  2:1959485/1‑128 (MQ=255)

                                  aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACTTACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTa                                                                                             >  2:7995927/1‑128 (MQ=255)

                                      gTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTaaa                                                                                           >  2:4350940/1‑128 (MQ=255)

                                       tAATTAACTTTTTCATTTTACAAACCCCTTATAAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGa                                                                                        <  1:1967893/128‑1 (MQ=255)

                                       tAATTAAATTTTTCATTTTAAACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAAAATATATAAAATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAAt                                                                                          <  1:9968448/128‑1 (MQ=39)

                                              cTTTTTCATTTTAAACACCACTTATTAAAAAATAAAATACTTTTTACATAAGATTCAAAACATATATAAAATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAata                                                                                   <  1:9491295/128‑1 (MQ=39)

                                                ttttAATTTTACACACCACTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGtat                                                                             <  1:6651480/128‑1 (MQ=255)

                                                   tctttttAAATAACCCTTATTAAAAAATATAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTataat                                                                          <  1:3410276/125‑1 (MQ=255)

                                                   tCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATA‑A‑AT‑‑AAAGAAAAATGTAAATTAAAATATGAtata                                                                            >  1:1764406/1‑128 (MQ=255)

                                                    cATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTataata                                                                         >  2:8484756/1‑128 (MQ=255)

                                                     aTTTTACACAAAACTTATTAAAAAATAAAATACTTGTTACATAATATTCAAAACATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTataat                                                                          <  1:4330139/128‑1 (MQ=255)

                                                     aTTTTAAACAAACATTATTAAAAAATAAAATAATTGTTACATAATATTAAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTataat                                                                          <  2:1642871/128‑1 (MQ=255)

                                                      ttttACACAAACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTataata                                                                         <  1:3811129/128‑1 (MQ=255)

                                                       tttACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAg                                                                        <  2:1263080/128‑1 (MQ=255)

                                                       tttAAACACCCCTTATTAAAAAATAAAATACTTGTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAg                                                                        <  1:6286108/128‑1 (MQ=255)

                                                             cacaaattattaAAAAATAAAATACTTGTTACATAAGATTCAAAAAATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCg                                                                  <  1:53449/122‑1 (MQ=255)

                                                              acaacTTAATAAAAAATAAAATACTTGATTCATACGATTAAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                               <  2:3374092/124‑1 (MQ=255)

                                                              acCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                               <  1:2811896/128‑1 (MQ=255)

                                                               ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGTTATAATATAAACAGTTta                                                              >  2:5463926/1‑128 (MQ=255)

                                                                  cTTATTAAAAAATAAAATAATTTTTACATAATATTCAAAAAATATATAAAATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                               <  1:4752291/128‑1 (MQ=39)

                                                                    tattaAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATTTATATATATATATATATATAT‑‑A‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                           >  2:5638173/1‑128 (MQ=255)

                                                                    tattaAAAAATAAAATAATATTTACATACTATTCAAAACATATATAAAATATATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                           <  2:1828323/128‑1 (MQ=255)

                                                                     attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                          <  2:8293940/128‑1 (MQ=255)

                                                                     attaAAAAATAAAATACTTGTTACATACGATTAAAAACATATATAACATACAATAAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtata                                                            <  2:6873940/128‑1 (MQ=255)

                                                                     ataataaaatataatATTTGTTACATAATATTTTAAAAATATATAAAATACATACAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                          <  2:9579519/123‑1 (MQ=255)

                                                                          aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                     <  2:939024/128‑1 (MQ=255)

                                                                           aaataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATAT‑‑AATAAAATATTTAAATTAAAATATGTTATAATATCAAAAGTTTATaaaat                                                        >  1:5501647/1‑126 (MQ=255)

                                                                             ataaaattCTTTATATATACGATTCAAAACATATATAACATACAATCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAAt                                                <  2:7077458/128‑1 (MQ=255)

                                                                              taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATTCAATATGTAAATTAAAATATTTTATAATAGCAACCGTTTATAAAGaaaaaaaa                                                 >  1:8133022/1‑128 (MQ=255)

                                                                                aaataTTTTTTAAATACTATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                               <  1:4115982/128‑1 (MQ=255)

                                                                                aaataTTTTTTAAATACGATTCAAAAGAAATATTACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                               <  2:6202385/128‑1 (MQ=255)

                                                                                aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATAT‑‑‑T‑‑AAT‑ATATATATATATAAAAATTTGTTATAATAACTACCTTATATAAATAAAAAAAATAGt                                             >  1:6011107/1‑128 (MQ=255)

                                                                                 aataCTTGTTAGATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAAt                                                <  1:831324/128‑1 (MQ=255)

                                                                                 aataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AAATAAATATATAAAAAAAAATATAATAAAATAGAAACCTTTTATAATATAAAAAAAt                                                >  2:2146776/1‑128 (MQ=255)

                                                                                 aataCTTGTTACATAAGATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAg                                              <  1:7592514/128‑1 (MQ=255)

                                                                                    aCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGATATAATAGCAACAGTTTATAAAGTAAAAAAATAATAAat                                         >  2:2831531/1‑128 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAAATTAAATATTTAAATAAAAATATTTTATAATAAACACAGTTTATAAAGTAAAAAAATat                                              >  1:1020340/1‑127 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATTGTATAATAGCAACAGTTTATAAATTAAAAAAATAGTa                                            >  1:9329704/1‑128 (MQ=255)

                                                                                      ttGTTTCATAAGATTCAAAACATATATAAAATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCTATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaa                                           <  1:9817606/128‑1 (MQ=255)

                                                                                      ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATTCAATATGTAAATGAAAATATGATATAATAGAAAAAGTTTATAAATTAAAAAAATAGTAAat                                         >  1:8507146/1‑128 (MQ=255)

                                                                                      ttGTTAAATAATATTCAAAAAATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                         <  1:31799/128‑1 (MQ=255)

                                                                                       tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATA‑AT‑T‑‑A‑‑‑‑AATATTTAAATAAAAATATATTATAATAGAAAAAGTTTATATAATATAATAATATAAAAaataat                                    >  1:8964284/1‑126 (MQ=255)

                                                                                        tttaaataataTTCTAAAAATATATAACATAAATTC‑T‑‑T‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAatat                                       <  1:1602372/118‑1 (MQ=255)

                                                                                        gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AAAAAAATATATAAAAAAAAATATATTATAATATATAAAGTTTATAAATTAAAAAAATATAAAat                                         >  2:3561906/1‑128 (MQ=255)

                                                                                          tACATATTATTCAAAACATATATAACATAAATTAATTATATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                         <  2:10303306/128‑1 (MQ=255)

                                                                                          tACATACTATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAatat                                       <  2:5864041/128‑1 (MQ=255)

                                                                                                cGATTCAAAACATATTTAACATACATTCAT‑‑TATATATATATATATATATATA‑A‑‑‑AATTAAATATATAAATAATAATTTGATATAATATAAAATTTTTATATAAAAAAAATATAAAAAATataatattaa                               >  1:4981367/1‑124 (MQ=255)

                                                                                                cGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGAAATATGTAAATTAAAATATGGTATAATATCAACAGTTTATAAAGTATAAAAATAGTAAATATACTACTTAtt                             >  1:1082313/1‑128 (MQ=255)

                                                                                                ataTTAAAAACATATATAATATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                               <  1:5132117/126‑1 (MQ=255)

                                                                                                 gATTAAAAACATATATATAATATATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAt                              <  2:8645394/128‑1 (MQ=255)

                                                                                                    tCAAAAAATATATAATATAAATT‑AT‑‑T‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTa                           <  1:6135812/128‑1 (MQ=255)

                                                                                                      aaaaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATTAAATATATAAATGAAAATATTTTATAATATCAACAGTTTATAAATTAAAAAAATATTAAATATAATACTTAttaa                           >  2:6453941/1‑126 (MQ=37)

                                                                                                       aaaaATATATAACATAAATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACta                        <  1:2404080/128‑1 (MQ=255)

                                                                                                       aaaaATATATAAAATAAATTAAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACta                        <  1:7782327/128‑1 (MQ=255)

                                                                                                       aaaCATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAACTAAAAAAATATTAAATAAACTACTTATTTACtaataa                    >  1:6819718/1‑128 (MQ=255)

                                                                                                         aCATATTTAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                    <  1:7346922/128‑1 (MQ=255)

                                                                                                         aCATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑‑‑AGT‑CAATATGTAAATGAAAATATGTTATAATAGCACCCTTATATAAAGTAAAAAAATAGTAAATATACTACTTATTTaataat                      >  2:7600729/1‑128 (MQ=255)

                                                                                                         aCATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑‑‑AAT‑AAATATATAATAAAAAATATTATATAATAACCACATTATATAAATTAAAAAAAGAATAAATATAATAATTAtaaaataaa                      >  2:10152044/1‑120 (MQ=255)

                                                                                                          cATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaata                     <  2:4801332/128‑1 (MQ=255)

                                                                                                           atatatAACATACATTCAT‑‑TATATATATATATATATATATA‑‑‑‑‑AA‑GCAATATGTAAATGAAAATATGGTATAATAGCAACCGTATATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                  >  2:527401/1‑128 (MQ=255)

                                                                                                           atatatAACATACATTCAA‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                      <  1:5700775/128‑1 (MQ=255)

                                                                                                            tatataATATATATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                   <  2:7799410/128‑1 (MQ=255)

                                                                                                            tatataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAAt                 >  2:2478902/1‑128 (MQ=255)

                                                                                                             atataACATACATTCATTATATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAAAACTTTATAAAGTAAAAAAATAGTATATATACTAATTATTTaataat                      >  2:3706957/1‑128 (MQ=255)

                                                                                                             atataACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAATAAAAAAATAGTAAATAAACTACTTATTTACtaataa                    >  1:2625023/1‑128 (MQ=255)

                                                                                                             atataACATACATTCAT‑‑TATATATATATATATATATATATA‑‑‑AA‑GCAATATGTAAATGAAAATATGATATAATATCAACCGTATATAAATTAAAAAAATATTAAATATACTACTTATTTACTAATaaaa                  >  2:7254745/1‑128 (MQ=255)

                                                                                                                taACATACATTCAT‑‑TATATATATATATATATATATATA‑‑‑AA‑GCAATATATAAATGAAAATATGGTATAATAGCAACAGTTTATAAATTAAAAAAATAGTATATAAAATACTTATTAACTTATAAAAtat               >  1:4534070/1‑126 (MQ=255)

                                                                                                                taACATACATTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  2:8867804/128‑1 (MQ=255)

                                                                                                                  acatacatTCAT‑‑‑‑TATATATATATATATATATATAT‑‑AATTCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAAATGTAAATATACTACTTATTAACTAATAAAatatat             >  1:7947239/1‑128 (MQ=255)

                                                                                                                    atacatTCAT‑‑TATATATATATATATATATATATA‑‑‑AA‑GAAATATGTAAATGAAAATATTGTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttt           >  2:4519844/1‑128 (MQ=255)

                                                                                                                     tacatTCATTATATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCTACCGTTTATAAAGTAAAAAAATATTAAATATACTACTTATTTACTAATAAAATCTa              >  2:10501985/1‑128 (MQ=255)

                                                                                                                          aaataatatatatatatatatatatatatat‑‑aATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCtttttta         <  2:4130914/122‑2 (MQ=255)

                                                                                                                                 atatatatatatatatatatatat‑‑aTTGCAATATGTAAATGAAAATATGGTATTATAGCAACAGTTTATAATGTAAAAAAATATTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaa  >  2:5086352/1‑128 (MQ=255)

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑‑AATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`