Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT55.7% 118.2 / inf 912intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (128/276);  new base T (165/343);  total (293/619)
Fisher's exact test for biased strand distribution p-value = 8.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.87e-01

Only 100 of 1088 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202367‑202621
                                                                                                                                  |                                                                                                                                 
  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCACTTaaaaa‑‑aaaaa                                                                                                                                 >  1:2468641/1‑126 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaa‑‑aatt‑aaaaaa                                                                                                                           >  2:1045807/1‑128 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTT‑ATCTTCACAAAAAAAAAAAAAACAATCCCC‑‑‑taaa‑‑aaat‑aaaaaa                                                                                                                           >  2:8000936/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAAACAC‑‑ataaaa‑‑aaat‑aaaaaa                                                                                                                           >  1:3548506/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATATTCAAAAATAAAAAAAAAACAATCCC‑‑ATtaaa‑‑aatt‑aaaaaa                                                                                                                           >  1:9376427/1‑128 (MQ=255)
     aataGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTATTGATCTATATTTTTAATAGTTA‑ATATACACAAATAAAAAAAAAACAAACCCC‑‑Ttaaa‑‑aatt‑aaaaaa                                                                                                                           >  2:6393122/1‑128 (MQ=255)
      ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaa                                                                                                                          >  2:8895023/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCATCGTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAATAAAAAAAAAAAAAACAC‑‑‑ATAAA‑‑AAAT‑aaaaaaaaa                                                                                                                        >  1:1336941/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAAT‑aaaaaaaaa                                                                                                                        >  1:8038955/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTAACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaa                                                                                                                     >  2:5416410/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaa                                                                                                                   >  1:8394466/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaa                                                                                                                   >  1:10014824/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAAAAA‑‑ACCAATTAAA‑‑AAAT‑aaaaaaaaaaaaaa                                                                                                                   >  1:270832/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACGAATAAAAAAAAAAAAATCACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaa                                                                                                                  >  2:8945890/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaa                                                                                                                  >  2:1318533/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTATTATTTAATT‑ATATAAACAAAAAAAAAAAAAAAAA‑‑ACAAATAAAA‑‑AAAT‑aaaaaaaaaaaaaaa                                                                                                                  >  1:483585/1‑128 (MQ=255)
                gtgtaattaatATAAAATAAAATTAATAATTATTATAAATTATATAATATTTATATATTTTTTTATATTTAT‑ATATAAAAAAATAAAAAAAAAAAAAT‑AAAAATAAAA‑‑AAAT‑aaaaaaaaaaaaaaaa                                                                                                                 >  1:2844679/4‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAATAAAAAAAAAACAATACACTT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                               >  1:3411011/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                               >  1:5554817/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                                >  2:10354539/1‑128 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAAAAATCACC‑‑‑AAAA‑‑AAAT‑taaaaaaaaaaaaaaaaa                                                                                                               >  1:3092709/1‑128 (MQ=255)
                  ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATT‑ATATTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaa                                                                                                              >  2:5559726/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                            >  1:6894785/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAAAAAACCC‑‑‑AAAAA‑‑AAAT‑taaaaaaaaaaaaaaaaaaaa                                                                                                            >  1:6300623/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAA‑AAAAACCAATAAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                                              >  2:8137991/1‑128 (MQ=255)
                   aaattaaAATATAATAAAATTAAAAAATAATAAAATTTATAAACTTGTTTTATATTTTTTTATTTTTTT‑ATATAAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                             <  2:2368969/127‑1 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaataaaa                                                                                                           >  1:8134778/1‑127 (MQ=255)
                     attaaAAAAAAATAAACTTAATAATTTATATAATTTTTATCCTCTTTTTATATTTTTTTATTTTTTT‑ATTTTAACAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaacta                                                                                                           <  1:8949777/128‑4 (MQ=255)
                       taaaataaaataaaaTTAATAATTCTTATAATTTATTTACTAGTTTTCTATTTTTTTATTTTTTT‑ATATTCACAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaactaaa                                                                                                         <  2:8092723/128‑6 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCAC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:10250372/1‑124 (MQ=255)
                          aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:5886699/1‑128 (MQ=255)
                           attacATAAAATTAATAATTATTAAAATGTATAAACTATTTATATAATTTTTTATTTTTTT‑ATATTCA‑AAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                                    <  2:7564726/124‑1 (MQ=255)
                           ataaaatataattAAAAAATCTTATAAATTATATACTCGTTTTCTTTTTTTTTTTTTTTTT‑ATTTTAACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                                    <  2:2946214/117‑1 (MQ=255)
                           ataaaaaaaaaataaaaaTTATTTTAATTTAGATCCTTCTGATATATTTTTTTATTTTTTT‑TATTTAAAAAAAAAAAAAAAAAAAATCCCC‑‑ATAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                   <  1:8293960/116‑1 (MQ=255)
                            tACCATTAATTTAAAAATTATTATATATTATCACATCGTTATAAATTTTTTTAATTTTTT‑AAAATCACAAAATAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                   <  2:9232193/128‑1 (MQ=255)
                                ataaattatataatTCATATATTTTATATTCTTGTTTTTTTTTTTTTTTTTTTTTT‑ATTTTCAAAAAAAAAAAAAAAACAAACCC‑‑‑AAAAA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                              <  2:8191962/119‑1 (MQ=255)
                                aaaaaaTTAATAATTATTTAAAATTACAACATCGTTTTATATTTTTTTATTTTTTT‑AAATTAAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                                 <  2:3102962/126‑1 (MQ=255)
                                 taaaaataattaTTTTTAAAATTTATAAACACGTGATAAATTTTTTTATTTTTTT‑AACATCACAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                                <  2:5725451/122‑1 (MQ=255)
                                        aataatTCTTATAATTTATATCCTTCTGATATTTTTTTTTATTTTTTT‑ATATTAACAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                        <  2:7784448/128‑1 (MQ=255)
                                           aaatattATAATGTATATCATCATTATATATTTTTTTATTTTTTT‑AAAATAAAAAAAAAAAAAAAAAAAAACCCC‑ATAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                      <  2:9148245/123‑1 (MQ=255)
                                             atCTTTTAATGTAGATCCTCTTGATATATTTTTTTAATTTTTT‑ATAATAAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                   <  2:9511676/127‑1 (MQ=255)
                                              tCTTATAATTTATATACTCTTTATATATTTTTTTTTTTTTTT‑ATATTCAAAAATAAAAAAAAAAAAATACCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                                   <  2:3698650/128‑1 (MQ=255)
                                                       gtacttCCTCGTTATCTATTTTTTTTTTTTTTT‑ATAATAAAAAATAAAAAAAAAACAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                         <  2:7875697/123‑1 (MQ=255)
                                                           aaactagttatatATTTTTTTTTTTTTTT‑ATATTAAAAAAAAAAAAAAAAAAAATCCCCTTAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                       <  2:8836449/116‑1 (MQ=255)
                                                            tactatttataaatttttttattttttt‑TAAATAACAAATAAAAAAAAAAAAATACCCTTAAAAAT‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                       <  2:417066/116‑1 (MQ=255)
                                                            aacttttttataatttttttattttttt‑A‑ATTTAAAAAAAAAAAAAAAAAAAAAACCATTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                     <  2:905913/116‑1 (MQ=255)
                                                             tatctttaattttttttttattttttt‑aATTTAAAAAAAAAAAAAAAAAAAAAACAC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                   <  2:9867120/116‑1 (MQ=255)
                                                              aaatttttatATTTTTTTTTTTTTTT‑ATATTAACAAATAAAAAAAAAAAAAT‑CCCATTAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                   <  1:5454799/119‑1 (MQ=255)
                                                                atttatatatttttttattttttT‑ATATTAAAAAATAAAAAAAAAAAAATCTCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                              <  2:6241665/121‑1 (MQ=255)
                                                                   tttataattttttattttttt‑atAATAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                             <  2:8315487/121‑1 (MQ=255)
                                                                   tatttatttttttattttttT‑ATATAAAAAAAAAAAAAAAAAAAAATCACC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                            <  1:2092972/124‑1 (MQ=255)
                                                                     tCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAACCTAAAAACAAAATATATTTATTAAAATTCACTATATAACAACattttat                                                           >  1:9618419/1‑128 (MQ=255)
                                                                      ttatttttttattttttT‑ATATTAAAAAATAAAAAAAAAACAAACCCATT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                         <  2:3550370/127‑1 (MQ=255)
                                                                        ttttttttATTT‑TTT‑ATTATTAAAAAAAAAAAAAAAAAAAAACCC‑ATTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  1:9105845/127‑1 (MQ=255)
                                                                        tatttttttttttttt‑AATATAAAAAAAAAAAAAAAAAAAATACCCTTT‑‑AA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  2:4417819/126‑1 (MQ=255)
                                                                        aTTTTTTTTTTTTTTT‑ATTATTAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  2:6513361/128‑1 (MQ=255)
                                                                        aTTTTTTTAATTTTTA‑ATAATAAAAAAAAAAAAAAAAAAAAAAACCA‑‑TAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  2:10001429/128‑1 (MQ=255)
                                                                         tttttttattttttt‑aTATTAAAAAAAAAAAAAAAAAAAAAACC‑‑ATTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                       <  2:5954496/128‑1 (MQ=255)
                                                                         tttttttattttttt‑aTAATAAAAAATAAAAAAAAAAAAAATCCATTT‑‑‑A‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑a                                                     <  2:3230354/128‑1 (MQ=255)
                                                                           tttttATTTTTTTAATATTAAAAAATAAAAAAAAAA‑AATAAAC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑aa                                                    <  2:1568869/128‑1 (MQ=255)
                                                                            tttttttttttt‑ATATTAAAAAATTAAAAAAAAAAAATACCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑aa                                                    <  2:4736202/128‑1 (MQ=255)
                                                                            ttttattttttt‑atttTTAAAAATTAAAAAAAAAAAATCCC‑‑ATTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑aaaa                                                  <  2:8478727/128‑1 (MQ=255)
                                                                             tttATTTTTTT‑TTATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑aaa                                                   <  2:5176397/128‑1 (MQ=255)
                                                                             tttATTTGTTT‑ATTATAAAAAAAAAAAAAAAAAAAATCACC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑aaaa                                                  <  1:10211581/128‑1 (MQ=255)
                                                                               ttttttttT‑ATATTCAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATaa                                               <  1:9160376/126‑1 (MQ=255)
                                                                               tATTTTTTT‑ATATTCCAAAAAAAAAAAAAAACAAACCCCTTAAAAA‑‑TTAC‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑aaaa                                                  <  2:7203421/128‑1 (MQ=255)
                                                                               tATTTTTTT‑ATAATAAAAAAAAAAAAAAAAAAAATACCCATT‑‑‑A‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATaa                                               <  2:2792337/128‑1 (MQ=255)
                                                                               tATTTTTTT‑AAATTAAAAAAAAAAAAAAAAAAAATACAC‑‑TAAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATa                                                <  2:9754611/128‑1 (MQ=255)
                                                                                 ttttttT‑ATATTAAAAAAAAAAAAAAAAAAAATACC‑‑ATTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAg                                              <  1:8889675/128‑1 (MQ=255)
                                                                                  tttttt‑ATATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGa                                             <  2:5808569/125‑1 (MQ=255)
                                                                                   ttttt‑ATATTTAAAAAAAAAAAAAAAAAAAAAACCTTT‑‑‑A‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGata                                           <  2:935476/126‑1 (MQ=255)
                                                                                        aatatttaaaaaTAAAAAAAAAAAAATAACC‑‑TAAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTg                                        <  2:6997560/119‑1 (MQ=255)
                                                                                         atatttaaaaaTAAAAAAAAAAAAAAAACCTTAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATAtt                                         <  2:4895311/120‑1 (MQ=255)
                                                                                           atacaaaaaTAAAAAAAAAA‑AATACACCTT‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACat                                    <  2:7332869/122‑1 (MQ=255)
                                                                                            ttCAAAAATAAAAAAAAAAAAAAAACC‑TTAAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACa                                     <  2:9401191/128‑1 (MQ=255)
                                                                                            ataaaaaaaaaaaaaaaaaaaATACCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACataa                                  <  2:1977304/123‑1 (MQ=255)
                                                                                              aaaaaaaaaaaaaaaaaaaaaCCCCTTAAAAAT‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACa                                     <  2:1163104/125‑1 (MQ=255)
                                                                                              aaaaaaTAAAAAAAAAAAAATTACATTAAAAAT‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACa                                     <  2:2542726/125‑1 (MQ=255)
                                                                                              aaaaaaTAAAAAAAAAAAAATCCCCATAAAAAATAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGAc                                      <  2:7913502/125‑1 (MQ=255)
                                                                                                caAATAAAAAAAAAAAAAT‑CCCATTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACataat                                 <  2:8629952/128‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaaaaaaCCATTAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACataa                                  <  2:2221232/127‑1 (MQ=255)
                                                                                                 aaaaaaaaaaaaaaaaATACCC‑ATTAAA‑‑ATTT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACataata                                <  2:6838669/128‑1 (MQ=255)
                                                                                                      aaaaaaaaaaaaTAACC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATc                          <  2:3815122/128‑1 (MQ=255)
                                                                                                        aaaaaaaCAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACGAAAAAACAAACAAATTTTATAAAATTTCCCAATTAAACC‑CAATTTATTTTTAAAAAAAAGATTTTAAAATAATTTATTTCTaa                       >  1:7970727/1‑128 (MQ=255)
                                                                                                                  aaacaaataaaa‑‑aatt‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAatatatat                <  1:10117859/119‑1 (MQ=255)
                                                                                                                    caattaaaaattaaaa‑aaaaaaaaaaaaaaaaaaaaACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAatatatat                <  2:1756437/116‑1 (MQ=255)
                                                                                                                    acccactaaa‑‑aaataaaaaaAAAAAAAAAAAAAAAACTAACAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATTAGatatatatt               <  2:3389491/122‑2 (MQ=255)
                                                                                                                     accattaaa‑‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATataa              <  2:9617737/124‑1 (MQ=255)
                                                                                                                       ccataaa‑‑aatt‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:1169584/125‑1 (MQ=255)
                                                                                                                       atttAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:3974657/127‑1 (MQ=255)
                                                                                                                       actaaaa‑‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:8641529/124‑1 (MQ=255)
                                                                                                                       aaaataa‑‑aaat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:3965081/123‑1 (MQ=255)
                                                                                                                        cttaaa‑‑aatt‑aaaaaAAAAAAAAAAAAAAAACAAAAAACCAAAACTATTTCGAAAAATTCCCAATTAAACAACATTTTATTTTT‑AAAAAAAAATATTATAATAATTAATATCAAATATAAataatata          >  1:9809636/2‑126 (MQ=255)
                                                                                                                         cttaa‑‑aaat‑taaaaaAAAAAAAAAAAAAAACAAAAAACAAACACTATTTATTAAAAATCCCTATTATACCACATTTTATTTTT‑AAAATAAAATATTGAAAAAATATATATATATTATATataataata         >  1:1085965/4‑128 (MQ=255)
                                                                                                                          taaa‑‑aattaaaaaaAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACta         <  1:9502657/128‑1 (MQ=255)
                                                                                                                           aaa‑‑aatt‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACtata       <  1:8518389/128‑1 (MQ=255)
                                                                                                                            aa‑‑aaat‑ttaaaaAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACTatat      <  2:8731489/128‑1 (MQ=255)
                                                                                                                                aaat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg    <  1:8771461/128‑1 (MQ=255)
                                                                                                                                aaaa‑aaaaaaaaaaaaaaaaaaaaACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTg    <  1:7860209/128‑1 (MQ=255)
                                                                                                                                 aat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGc   <  2:10125386/128‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                 
TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTT‑AAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202367‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑