Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T60.1% 1020.0 / inf 542intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (111/104);  new base T (253/71);  total (365/177)
Fisher's exact test for biased strand distribution p-value = 2.09e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 653 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAT  >  CP016816/203768‑204020
                                                                                                                                        |                                                                                                                                       
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑T‑C‑‑T‑‑Tg                                                                                                                                          >  1:778163/1‑128 (MQ=255)
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑T‑C‑‑T‑‑Tg                                                                                                                                          >  1:960101/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATTAAAATTTTTAATTTAAAGCCATTTTTAAAAAAGCCTTTTTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAACTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑t                                                                                                                                   <  1:609645/128‑1 (MQ=255)
     ttttttttAT‑AAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tt                                                                                                                               >  1:3171585/1‑128 (MQ=255)
          tttATAAAAAAAAATAAAATTTATTCATTTAAAGCCAGTTGTAAAAAAGCGTATGTTGTAGGCTTTTTATTTTACTTATCATCTTTTCAAAGAATTCTAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TC‑‑‑at‑at‑tttttt                                                                                                                           >  1:745004/1‑128 (MQ=255)
            tttaAAAAAAAATAAAAATTTTTAATTTAAATCAATTTTTATAAAATTCTTTGTTATATGCTTTTTTTTAATATTATCAAAATTACAACGCTTTCAAAGTG‑TTTTTTTTT‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑tt                                                                                                                        <  2:1112340/126‑1 (MQ=255)
            tataAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑tt                                                                                                                        >  1:2661407/1‑128 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTAGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCACAAATACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑ta‑tt‑tttttt‑tttt                                                                                                                      >  2:3538127/1‑128 (MQ=255)
              ataaaaaaaaTTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑tttt                                                                                                                      >  2:1539013/3‑128 (MQ=255)
                ataaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑tttttt                                                                                                                    >  1:2938054/3‑128 (MQ=255)
                aaaaaaaaTAAAAATTTATCATTTAAAGCCATTTGTAAAAAAGCCTATGTACTAGGATTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑T‑G‑C‑‑T‑‑TT‑‑‑tt‑tt‑tatttt‑ttttta                                                                                                                    >  2:2142621/1‑127 (MQ=255)
                 aaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑ttttttt                                                                                                                   >  1:2546819/1‑127 (MQ=255)
                 aaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCATATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑A‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑ttttttt                                                                                                                   >  1:3631985/1‑127 (MQ=255)
                   aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACGTATCAACATTACAACGCTATCAAAGTG‑TATGTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑ttttttttt                                                                                                                 >  1:1074373/1‑125 (MQ=255)
                       ataaaaatTTTTAATTTAAAGCCATTTGTAAAAAATCCTATGTGCTAGGCTTTTTATTTTACTTATCAACATTACACCGCTTTCAAAGTG‑TTTTTTTTT‑G‑G‑G‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑aaaa                                                                                                             <  2:3772427/128‑1 (MQ=255)
                        taaaaatTTTTCATTTAAAGCAATTTTTAAAAAAGCCTTTGTTATAGGGTTTTTTTTTTACTTATCAACATTACAACGCTTTCAAAGTT‑TATTTTTTA‑G‑G‑G‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑aaaaa                                                                                                            <  2:1321046/128‑1 (MQ=255)
                         aaaaatTTTTAATTTAACCCCATTTTAAAAAAATCCTTAGTTCAAGGTTTTTTTATAAACTATTCAAAAATACAACCCTTTAAAAGTG‑TTTTTTTTT‑G‑G‑G‑‑T‑‑TG‑‑‑tt‑tt‑tttttt‑ttttttttgtaaaaa                                                                                                           <  2:2524248/128‑10 (MQ=255)
                          aaaatTTTTTAATAAAACCCATTTGTAAAAAAGCCTTTTTTCTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAATTG‑TATTTTTTT‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATa                                                                                                          <  1:1265537/128‑1 (MQ=255)
                          aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATTTTCTAGGCTTTTTATTATAATTATAAAAATTACAAATATTTCAAAGTT‑TATTTTTTA‑G‑G‑A‑‑T‑‑TT‑‑‑TT‑AT‑TTTTTT‑TTTTTTTT‑aaaaaata                                                                                                         >  1:3029984/1‑125 (MQ=255)
                           aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATaaa                                                                                                        >  1:1019902/1‑128 (MQ=255)
                           aaatTTTTAATTTAAATACTATTTTAAAAAACCCTATTTTATATGGTTTTTATTTTAATTATCAACATTACAACGCTTTTAAATTT‑TTTTTTTTA‑G‑T‑CT‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATaa                                                                                                         <  1:2985531/128‑1 (MQ=255)
                           aaatTTTTAATTTAAAACCATTTTTAAAAAATCCTATTTTTTAGGGTTTTTTTTTTACTTTAAAAAATTAAAACGCTTTAAAATTG‑TATTTTTTA‑T‑G‑G‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATa                                                                                                          <  1:3668954/128‑1 (MQ=255)
                             atTTTTCATTTAAATCAAATTTTAAAAAAGGCTATGTTGTTGGGTTTTTATTTATCTTATCAACATTTCAACGCTTTCAAAGTT‑TAATTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAg                                                                                                      <  1:3314039/128‑1 (MQ=255)
                             atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAATTG‑TATTTTTTA‑G‑T‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑Aaaaaaaaatt                                                                                                      >  2:703891/1‑126 (MQ=255)
                             atTTTTCATATAAAGCCATTTGTAAAAAAGCCTATGTTCTATCATTTTTATTATACTTATCAACATTACAACGATTTCAAAGTG‑TAAATAATA‑T‑T‑C‑‑T‑‑AG‑‑‑TTATT‑TTATTT‑TTTATTAA‑AAAAATaaaa                                                                                                       >  1:3548769/1‑128 (MQ=255)
                              tttttCATTTAAAGCCATTTGTAAAAAAGCATATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTA‑TTTTTTTT‑AAAATAAAAAGt                                                                                                     >  1:3857539/1‑128 (MQ=255)
                               ttttTATTTAAATTCATTTTTAAAAAAGTCTTTTTTTTATGTTTTTTATTTTAATTTTAAAAATTAAAAAGCTTTTAAATTG‑TTTTTTTTT‑T‑G‑G‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑a                                                                                                   <  2:1647862/128‑1 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATaaaatt                                                                                                     >  1:3566351/1‑126 (MQ=255)
                               ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTTATTTTTTTT‑AAAAATAAAAGt                                                                                                     >  1:1423738/1‑128 (MQ=255)
                               ttttAATTTATATCAATTTGTAAAAAATGCTATTTTTTATGATTTTTTTTTTATATATAAAAATTAAAAATCTTTAAAAGTG‑TATTTTTTA‑T‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑a                                                                                                   <  2:772606/128‑1 (MQ=255)
                                ttttATTTAAATAAATTTTTAAAAAAAAATATTTTATTTGTTTTTTATTATTATTATTAAAATTAAAAATATTTTAAATTT‑TATTTTTTA‑T‑T‑CT‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑a                                                                                                   <  1:2877137/128‑1 (MQ=255)
                                tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTACAAAGTG‑TATTTTTTA‑G‑G‑A‑‑T‑‑TG‑‑‑TT‑TTATTTTTT‑TTTTTTTT‑AAAAAAAAAAAT‑a                                                                                                   >  1:2503232/1‑128 (MQ=255)
                                 ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATaaaataaa                                                                                                   >  1:1203067/1‑124 (MQ=255)
                                   taTTTAAATGCATTTGTTAAAATGGCTATGTTTTAGGCTTTTTTTTATAATTATAAACATTTCATCGATTTTAAAGTG‑TATTTTTTT‑G‑GTT‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGa                                                                                                <  2:2223040/127‑1 (MQ=255)
                                   aaTTTAAATCAATTTTTAAAAAATCTTATTTTTTATGATTTTTATTATAATTATAAACATTAAAACGCTTTAAAATTT‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGa                                                                                                <  1:1835623/127‑1 (MQ=255)
                                     gaattatcaaTTTGTTAAAAAGCCTATGTTTTATGCTTTTTATTTTTATTATTAATATTACTACTTTTTTAAATTG‑TATTTTTTT‑T‑G‑T‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGAttt                                                                                             <  2:2969453/119‑1 (MQ=255)
                                      ttAATGCCATTTGTAAAAAAGGCATTTTTCTTTGTTTTTTATTTTACTTATAAACATTACAACGCTTTCAAAGTG‑TTTTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGAttt                                                                                             <  2:2485381/128‑1 (MQ=255)
                                       tAAATCAATTTTTAAAAAATAATTTTTTCTTTGCTTTTTATTATACTTATAAACATTAAAACTTTTTAAAATTT‑TATTTTTTA‑G‑G‑G‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTg                                                                                            <  1:2172250/128‑1 (MQ=255)
                                             cATTTTTTAAAAAGCCAAATTTTTTTGCTTTTTTTTATTCATATAAACTTTTAAACCCTTTCAATTTG‑TATTTTTTT‑G‑G‑CCTT‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCa                                                                                       <  2:3214366/128‑1 (MQ=255)
                                               tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAAT‑AATATTTGGATCaca                                                                                     >  2:3485398/1‑126 (MQ=255)
                                                 tGTATAAATGCCTTTTTTGTTTGCTTTTTTTTATAATTTTTAAAAATAAAACTCTTTTAATTTG‑TATTTTTTT‑T‑T‑G‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑TAAAATTAAAGG‑TATTTTTGGTTTAACCaaa                                                                                 <  2:2409295/128‑1 (MQ=255)
                                                  gaaaaaaaGCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCaaa                                                                                 <  1:3396195/126‑1 (MQ=255)
                                                   tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑ATGTTTTGTTACAGCCaaaa                                                                                >  1:1619386/1‑128 (MQ=255)
                                                   tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGAG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTA‑AAAAAAAAAAGT‑AAGATTTATATCAACCAAAAc                                                                               >  1:3727749/1‑128 (MQ=255)
                                                    aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑TAAATAAAATGT‑ATGATTTGGTTCATAGAAAACt                                                                              >  1:1550408/1‑128 (MQ=255)
                                                     taaaaTCCTATTTTATATGCTTTTTTTTATAATTATAAAAAATACAACTCTTTAAAATTG‑TATTTTTTA‑T‑G‑C‑‑T‑‑TG‑‑‑‑T‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACtat                                                                            <  1:667577/127‑1 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGTTTAAACCaaaaat                                                                              >  2:1403860/1‑126 (MQ=255)
                                                      aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑ATTATTTGGATCAAACAAAAAtaa                                                                            >  2:627789/1‑127 (MQ=255)
                                                        aatcttttGTTTTATGTTTTTTATTATAATTATAAACATTAAAACGCTTTCAAATTG‑TATTTTTTA‑G‑G‑CT‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACtata                                                                           <  2:308707/121‑1 (MQ=255)
                                                        aaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAATAAAATTT‑AAAATTTGTTTTCACCAAAAatattt                                                                          >  1:858597/1‑126 (MQ=255)
                                                         aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑AT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAAT‑AATATTTGTATAAACAAAaaataaata                                                                         >  2:874029/1‑127 (MQ=255)
                                                          gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑TTCTT‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAATTT‑AAAATTTTTATAAACAaaaaattaat                                                                          >  1:3240466/1‑122 (MQ=255)
                                                            cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAATT‑AATATTTGGATCAACCaaatatttttaaa                                                                       >  1:321335/1‑118 (MQ=255)
                                                            atagttttttttcTTTTTTTTATATATATCATAATTAAAACGCTTTTATTGTT‑TTTTTTTTA‑G‑G‑T‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAGACTATAT‑Caaa                                                                     <  2:1911727/116‑1 (MQ=255)
                                                             aaagttaaatgCTTTTTATTAAACAAATCATCATTACAAAGCTTTAAAATTG‑TATTTTTTA‑T‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑Caaa                                                                     <  2:492122/118‑1 (MQ=255)
                                                               tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTT‑T‑TAATATAAAATT‑TATTTTTTGTTGAAACAAAACTTAAT‑Gaaaaata                                                                 >  1:2784475/1‑126 (MQ=255)
                                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATTAAATT‑AAAATTTTAATAAACCAAAAAAATAT‑Aaaaaaa                                                                  >  2:3413200/1‑128 (MQ=255)
                                                                gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATTAAAGT‑ATGATTTGGATCACCCAAAAAGAAAA‑Caaaaaa                                                                  >  2:3569026/1‑128 (MQ=255)
                                                                 ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑AAGATTTGGAAGAACCAAAATTTTTT‑aaaaaaaa                                                                 >  1:1689183/1‑128 (MQ=255)
                                                                  tattggttttttATTATAATTATAAAAATTACAAAGCTTTTAAATTG‑TTTTTTTTA‑G‑GTT‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑t                                                               <  2:3699981/121‑1 (MQ=255)
                                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑AATATTTGGTTCAACCAAAACTATAA‑AAAAAAAA‑tt                                                              >  2:457930/1‑128 (MQ=255)
                                                                  tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTATTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGA‑AAAAATAAAAGT‑AAGATTTAGATCAACAAAAAATAAAT‑Ataaaaaa                                                                 >  2:1047257/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAGT‑AATTTTTTGATAAACCAAAACAATaa‑aaaaaaaaat                                                               >  2:2015452/1‑126 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAATT‑AAGAATTTAAAAAAACAAAAATAAAT‑AAAAAAAA‑tt                                                              >  1:3463195/1‑128 (MQ=255)
                                                                   cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGA‑ATTAATAAAATT‑AATATTTTTATAAACAAAAACTATAT‑AAAAAAAA‑taa                                                             >  1:1735557/1‑126 (MQ=255)
                                                                   atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAGT‑AAGATTTTGATCAACCAAAAATATTT‑AATAAAAA‑tt                                                              >  1:3789067/2‑128 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑AATATTTTGGTAAAACAAAAAGTAAT‑AAAAAAAA‑ttt                                                             >  1:3497312/1‑127 (MQ=255)
                                                                    tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAATT‑AAGATTTGTATAAACAAAAAATA‑AT‑aaaaaaaaaataa                                                            >  1:1304878/1‑123 (MQ=255)
                                                                     ttggttttttttttACTTATCAACATTAAAAAGTTTTTTATGTG‑TATTTTTTA‑G‑T‑G‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTaa                                                            <  2:1258047/124‑1 (MQ=255)
                                                                      gggtttttATTTTACATATAAAAAATACAAACCCTTAAAATTG‑TTTTTTTTATG‑G‑CT‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTaa                                                            <  2:3362335/125‑1 (MQ=255)
                                                                      ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAATT‑AAAATTTGGATCAACCAAAACTTTAT‑AAAAAAAA‑Taaa                                                            >  2:3312689/1‑128 (MQ=255)
                                                                           ttttttATATTTTTTAATATTAAAACTATTTAAATTTG‑TATTTTTTA‑G‑G‑T‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTaaaaaaaa                                                      <  1:895941/128‑1 (MQ=255)
                                                                           tttATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTTAAAAAAAAAAAAT‑AAAATTTGAAAAAACAAAAAAAAAAA‑AAAAAAAT‑TTaaaaaaaa                                                      >  2:2743728/1‑128 (MQ=255)
                                                                                    tttATAAACATTAAAATTCTTTAAAATTT‑TTTTTTTTT‑G‑G‑T‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAAta‑gtttagtt                                           <  2:3173915/127‑1 (MQ=255)
                                                                                    cTTATATACATTAAAAAGCTTTAAAATTG‑TTTTTTTTT‑T‑G‑C‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAAta‑gtttagtt                                           <  2:3384137/128‑1 (MQ=255)
                                                                                     ttATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑AATATTTTTATAAACCAAAAATATAT‑AAAAAAAA‑TTaaaaaaaaatttttattt                                            >  1:1967460/1‑118 (MQ=255)
                                                                                     ttATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAAT‑AAAATTTGGATAAACCAAAAATATAT‑AAAAAAAA‑TTAAAAAAAAta‑tttaattt                                           >  1:2303228/1‑123 (MQ=255)
                                                                                     ttATAAAAATTAAATCTCTTTAAATGTT‑TATTTTTTA‑T‑G‑CT‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAAta‑gtttagtt                                           <  2:960101/128‑1 (MQ=255)
                                                                                      taatcaCATTACAACGCTTTTAAAGGGTTTTTTTTTT‑G‑G‑T‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAAta‑gtttagt                                            <  2:3259018/123‑1 (MQ=255)
                                                                                      tATTAAAATTACAACTTTTTCAATTTG‑TATTTTTTA‑GTT‑T‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAATA‑GTTTAGTTg                                          <  1:3122432/128‑1 (MQ=255)
                                                                                       aTCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑AAAAAAAA‑TTAAAAAAAAta‑ttttattta                                          >  1:524522/1‑127 (MQ=255)
                                                                                        tCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAAAAAAATT‑AAAATTTGTATAAAACAAAAAAATAA‑AAAAAAAA‑TAAAAAAAAAta‑tttttttttat                                        >  2:3639475/1‑121 (MQ=255)
                                                                                        tCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑TAAAATAAAAAT‑AAAAATTTTTAAAAACAAAAAAATAT‑TAAAAAAATTTAAAAAAAAta‑tttaatttatt                                        >  1:2275753/1‑120 (MQ=255)
                                                                                         cAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAAT‑AAAATTTTGGAAAACCAAAAAAAATA‑AAAAAAAA‑TTAAAAAAAAaa‑attttatttat                                        >  1:1893764/1‑121 (MQ=255)
                                                                                            cATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAAAAAAAGT‑AATATTTGGATAAACCAAAAATATAT‑CAAAAAAA‑TTAAAAAAAAAA‑TATTagtttagttta                                    >  1:420574/1‑127 (MQ=255)
                                                                                             aTTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAAAAAAATT‑AATTATTGGAACAAACAAAACTATTT‑AAAAAAAT‑TTAAAAAAAAAT‑GTTTATTTTATTTTc                                    >  1:2037875/1‑128 (MQ=255)
                                                                                               tACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑TAAAATAAAAGT‑AATATTTTGATAAACCAAAACTTTTT‑AAAAAAAA‑TTTAAAAAAATA‑TTTTAGTTTAGTTTCaaa                                 >  1:2907799/1‑128 (MQ=255)
                                                                                                acaactctagaaaaGTG‑TATTTTTTA‑T‑G‑A‑‑G‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAATA‑GTTTAGTTGAGTTTCaaa                                 <  2:3147155/117‑1 (MQ=255)
                                                                                                 cAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAAT‑AAATATTTGATAAAAACAAAAAAAAA‑AAAAAAAA‑TAAAAAAAAAta‑ttttattttatttaaaaaa                                >  2:185082/1‑117 (MQ=255)
                                                                                                     gCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAGT‑AAGATTTGGATAAACCAAAAATATTT‑CAAAAAAA‑TTAAAAAAAATA‑TTTTATTTTATTTTCAAAtaagca                           >  1:2127039/1‑123 (MQ=255)
                                                                                                      cTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTTTTT‑TT‑TTTTTT‑TTTTTTTT‑AAAAAAAAAAGT‑AAAATTTTGTTAAACCAAAAAAAAAA‑AAAAAAAA‑TTAAAAAAAAAA‑TTTTATTTGTGTTTaaaaattgc                            >  2:303798/1‑123 (MQ=255)
                                                                                                       tttCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAAAAAAAATAAAAAATTGGAACAACAAAAAAAAT‑T‑AAAAAAAA‑TTAAAAAAAAAATTTTTAGTTGATTTTaaaaagtgctaa                         >  2:2904352/1‑120 (MQ=255)
                                                                                                        ttCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAAGT‑AATATTTTGATCAACCAAAAATAAAA‑AAAAAAAA‑TTTAAAAAAATA‑TTTTATTTGTTTTTAAAAACTGCatat                        >  1:3353176/1‑128 (MQ=255)
                                                                                                             tttg‑tATTTTTTATG‑T‑T‑‑T‑‑TT‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGt                   <  1:457662/126‑1 (MQ=255)
                                                                                                             aGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TGTT‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAAATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAATA‑TTTTATTTGAGTTTCAAATCTGAAAATATAg                    >  1:1392219/1‑128 (MQ=255)
                                                                                                                g‑tATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑AAAATTTGGATAAAAAAAAAATTTTT‑AAAAAAAA‑TTAAAAAAAATA‑TTTTATTTTATTTTCAAATATGCATATATATTaaa                >  1:2737572/1‑126 (MQ=255)
                                                                                                                g‑tATTTTTTA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAAT‑AATATTTTGATAAACCAAAACTATAT‑AAAAAAAA‑TTAAAAAAAAAA‑TTTTATTTTAGTTTAAAATATGCAtttatataaaa                >  1:1347123/1‑123 (MQ=255)
                                                                                                                g‑tATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTT‑T‑AAAAAAAAAATT‑AAAATTTTGATAAACCAAAAATATATAAAAAAAAA‑TTAAAAAAAAT‑‑TTTTATTTTATTTTTAAATAAGAATATATAGAACaaa              >  1:194535/1‑128 (MQ=255)
                                                                                                                        ttA‑G‑G‑C‑‑T‑‑TGT‑‑TT‑TT‑TTTTTT‑TTTTTTTT‑AAAAATAAAATT‑AATTTTTGGATCAACCAAAAATATAT‑AAAAAAAA‑TTAAAAAAAAAT‑TTTTATTTGATTTTAAAAAATGAATATATATTAaaaactaat         >  1:3104523/1‑123 (MQ=255)
                                                                                                                            g‑g‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTT‑T‑AAAAAAAAAATT‑AAGATTTTGATCAACCAAAACTAAAT‑AAAAAAAA‑TTAAAAAAAATT‑TTTTTTTTTATTTTAAAATGTGAATATATAGAAAAAATTAATTTaat    >  1:2409774/1‑126 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TATTTTTTA‑G‑G‑C‑‑T‑‑TG‑‑‑TT‑TT‑TTTTTT‑TTTTTTGT‑AAAAATAAAAGT‑AAGATTTGGATCAACCAAAACTATAT‑CAAAAAAA‑TTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAT  >  CP016816/203768‑204020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑