Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4810CA44.7% 195.3 / 85.8 311intergenic (+259/‑416)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (91/70);  new base A (31/99);  total (128/183)
Fisher's exact test for biased strand distribution p-value = 1.62e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 346 total aligned reads displayed.

AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCT  >  CP016816/202354‑202598
                                                                                                                                |                                                                                                                        
agtGAATTTATTGTAAATAATAGATTTAATGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATAATCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                          <  1:1834260/128‑1 (MQ=255)
agtGAATTTATTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                          <  2:508494/128‑1 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                          <  1:61282/128‑1 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                          <  2:1428879/128‑1 (MQ=255)
agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                          <  1:2289597/128‑1 (MQ=255)
   gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATcaaa                                                                                                                       >  2:462045/1‑125 (MQ=255)
      gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATATTATTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATccccaaa                                                                                                                    >  2:2619289/1‑125 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGTTTAATTAAAATAACATAAACATAATAATTCTTATAATGTATATACTAGTTATCTATTATTTTAATTTTTTATATTAACAAAA‑AAAAAAAAAACAATcaacttaa                                                                                                                   >  2:3413936/1‑121 (MQ=255)
       ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACCttaa                                                                                                                   >  2:3531241/1‑126 (MQ=255)
        tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCCtaaaa                                                                                                                  >  2:3885943/1‑124 (MQ=255)
        tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAccaataaaa                                                                                                                  >  2:1350260/1‑121 (MQ=255)
         attgtAAATAAAATAGTTAATTTTAATTAAAATAACATAAAATTAATAATTCTTATAATTTATAAACTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                 <  1:102321/126‑5 (MQ=255)
         aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaa                                                                                                                 >  2:3265749/1‑124 (MQ=255)
               aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCttaaaaattaaa                                                                                                           >  1:3841453/1‑118 (MQ=255)
               aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTACACAAAT‑AAAAAAAAAACAAAccccaaaaaaaataaa                                                                                                           >  2:2470416/1‑116 (MQ=255)
                ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACCC‑CTaaaaaaat‑aaa                                                                                                        >  1:3081183/1‑128 (MQ=255)
                  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑Ttaaaaatt‑aaaaaa                                                                                                     >  2:3741979/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAAT‑taaaaaaaa                                                                                                  >  1:3263757/1‑128 (MQ=255)
                    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTC‑TAATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATT‑aaaaaaaaa                                                                                                  >  2:1062340/1‑128 (MQ=255)
                        tttAATGTTAATATAAAAACCAATAATATATAAAATCTTATAATGTATCTCCGCGGTTACTATTTTTTTTTTTTTTTATCTTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaa                                                                                              <  2:3841527/127‑1 (MQ=255)
                         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATACCC‑‑TTAAAAATT‑aaaaaaaaa‑aaa                                                                                              >  2:2299585/1‑128 (MQ=255)
                          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCC‑‑AAAAAAAAAT‑aaaaaaaaa‑aaaaa                                                                                            >  2:1547589/1‑128 (MQ=255)
                           tattttaaataaAATAACATAAAATTAAAAATTATTTAAATTTATATACACGTTTTATATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAACAATACCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaa                                                                                           <  1:3544420/124‑1 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑‑AAAAAAAAACAATCAAC‑‑ATAAAAATT‑aaaaaaaaa‑aaaaaaa                                                                                          >  2:2014184/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaa                                                                                           >  2:3193363/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaa                                                                                           >  2:3080428/1‑128 (MQ=255)
                           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaa                                                                                           >  2:3619315/1‑128 (MQ=255)
                            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTAATTTTTTATTTTATTATCTACACAAAT‑AAAAAAAAAAAAATAACAATAaaaaaaaa‑aaaaaaaaa‑aaaaa                                                                                            >  2:100192/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaa                                                                                         >  2:3173428/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAC‑‑‑AATAAAAAAT‑taaaaaaaa‑aaaaaaaaa                                                                                        >  2:314675/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAAAAAT‑‑CAAATTAAAAATT‑aaaaaaaaa‑aaaaaaaa                                                                                         >  1:1352412/1‑128 (MQ=255)
                             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTATATCTTAACAAAT‑AAAAAAAAAAAAAAAAC‑‑ATTAAAAATT‑aaaaaaaaa‑aaaaaaaa                                                                                         >  1:358156/1‑128 (MQ=255)
                              ttttattaaAAAAAAATAAAATTAAAAATTTTTTTAATTTTTATCCTTTTTTTATTTTTTTTTATTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaa                                                                                        <  2:1158472/124‑1 (MQ=255)
                              tttaattaaAATAAAATAAAATTAATAATTATTAAAATTTTTATACTCTTTTTATATTTTTTTATTTTTTTATATTCACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaa                                                                                        <  1:3158934/127‑1 (MQ=255)
                              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAAAAAC‑‑‑ATAAAAAAT‑aaaaaaaaa‑aaaaaaaaaa                                                                                       >  2:220125/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaaaa                                                                                      >  1:3246749/1‑128 (MQ=255)
                                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTATATCTTCAAAAAT‑AAAAAAAAAACAATCCAATTAaaaaaaaa‑aaaaaaaaa‑aaaaaaaaa                                                                                        >  2:2441219/1‑128 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAATAC‑‑‑AATAAAAAAT‑aaaaaaaaa‑aaaaaaaaaaacaa                                                                                   >  1:1107482/1‑125 (MQ=255)
                                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                    >  1:3059642/1‑127 (MQ=255)
                                  attaaAATACCATAAACTTAAGAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAATAT‑aaaaaaaaa‑aaaaaaaaaaaaa                                                                                    >  2:891520/1‑127 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                               >  2:3444236/1‑128 (MQ=255)
                                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATT‑Aaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                               >  2:2970013/1‑128 (MQ=255)
                                       aaTAACATTAAATAATTAATTATTTTAATTTAGTACCATGTTTTCTATTTTTTTATTTTTTTATCTTCACAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTaaaa                                                                               <  1:2482517/128‑1 (MQ=255)
                                               aaaaataaaaaTTATTATAATTTATATACACTTTATTTATTTTTTTATTTTTTTATATTCACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTa                                                                    <  1:1276140/123‑1 (MQ=255)
                                                   ttAATAATTAATATAATATATATCAATGTCAAATATTTTTTTAATTTTTTAATATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTAtt                                                                  <  1:1941158/128‑1 (MQ=255)
                                                     aataaaTCTTATTATTTTCTTACTCGTGATAAATTTTTTTATTTGTTTATCTT‑ACAAAA‑AAAAAAAAAAAAAAACCCCTT‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCt                                                               <  1:3374986/128‑1 (MQ=255)
                                                      ataataTTTATAATTTATATCCTCGTTATTTATTTTTTTATTTTTTTATTTTCAAAAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCtt                                                              <  2:2071536/128‑1 (MQ=255)
                                                      ataatTCTTATAATGTAGAAACTAGTTATATATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTa                                                             <  1:1378216/128‑1 (MQ=255)
                                                         attattATAATTTTAATTCTATTGATTTATTTTTTTATTTTTTTTAATTTAAAAAT‑AAAAAAAAAAAAAATCCACATAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCtt                                                              <  1:1340634/128‑1 (MQ=255)
                                                         aatCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAAAAAAAAATT‑AAAAAAAAATAAAAAAAAAAAAAAAAAAACAAA‑CTAAAtttataa                                                             >  2:919304/3‑124 (MQ=255)
                                                           ttataaaaTTTATATACTAGTTATCTATTTTTTTAATTTTTTAACTTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTaaa                                                           <  1:1071951/122‑1 (MQ=255)
                                                                    ttAGATACTCGTTTTTTTTTTTTTTTTTTTTTTTTATT‑AAAAAA‑AAAAAAAAAAAAAACACC‑TTAAAATATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCtatt                                                 <  2:773712/127‑1 (MQ=255)
                                                                      aGATCCTAGTTTTATATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCtattat                                               <  1:3619315/128‑1 (MQ=255)
                                                                        ttaatatttttttatttttttattttttTATATAAAAAAAA‑AAAAAAAAAAAAATAAAC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATAc                                             <  1:9716/116‑1 (MQ=255)
                                                                        ataatatttttttatttttttattttttTATATTAAAAAAT‑AAAAAAAAAACAATTCAC‑‑TTAAAAAAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATAcc                                            <  1:518682/116‑1 (MQ=255)
                                                                         actattttaaatatttttttattttttTAAATAAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATAcc                                            <  1:731522/117‑1 (MQ=255)
                                                                         acatCGTTATATATTTTTTTATTTTTTTAAATT‑AAAAAA‑AAAAAAAAAAAAAAACACATTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATAc                                             <  1:2091155/125‑1 (MQ=255)
                                                                          acgtgTGATTTATTTTTTTTATTGTATATATTAACAAAA‑AAAAAAAAAAAAATGCCC‑‑ATAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACca                                           <  1:2021421/124‑1 (MQ=255)
                                                                          aaatatttattATTTTTTTAATTTTTTAAAAAAAAAAAA‑AAAAAAAAAAAAATACC‑‑ATAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACca                                           <  1:1590884/118‑1 (MQ=255)
                                                                           caattttttaaTTTTTTTAATTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACcac                                          <  1:3116654/118‑1 (MQ=255)
                                                                           atctttatttatttttttattttttTAAATTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACcac                                          <  2:3004684/119‑1 (MQ=255)
                                                                           aaagtttattatttttttattttttTATATTTAAAAAT‑AAAAAAAAAAAAATCGAC‑TTTAATATTT‑AAAAAAAAA‑AAAAAAATAAAAATAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACca                                           <  1:2175697/119‑1 (MQ=255)
                                                                              gttttttATTTTTTTTTTTGTTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattt                                      <  2:3768404/122‑1 (MQ=255)
                                                                              gttttatatttttttattttttAAAATTAAAAAAT‑AAAAAAAAAAAAAACCCATTAAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACcaca                                         <  1:2373765/122‑1 (MQ=255)
                                                                               ttttttATTTTTTTATTTGTTTTTTTTAAAAAAT‑AAAAAAAAAAAAAT‑TACATTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACatt                                       <  2:3031607/123‑1 (MQ=255)
                                                                               ttaTCTATTTTTTTAATTGTTTAATATCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattt                                      <  1:1703326/126‑1 (MQ=255)
                                                                                 tatatattttttatttttttatAATTAAAAAA‑AAAAAAAAAAAAAAACCCCTTAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattt                                      <  1:3127413/122‑1 (MQ=255)
                                                                                 ataaatttttttatttttttAAATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACatttta                                    <  1:293705/124‑1 (MQ=255)
                                                                                  tattttttttttttTGTTTTTATTCACAAAT‑AAAAAAAAAAAAATACCC‑TTAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACatttta                                    <  1:2970623/124‑1 (MQ=255)
                                                                                  tatATTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAAACAC‑TTAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACatttta                                    <  1:2956551/126‑1 (MQ=255)
                                                                                   atatttttttattttttTAAAATAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                  <  1:276474/127‑1 (MQ=255)
                                                                                    tttttttttatttttttaTATTAAAAAAT‑AAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                <  2:3395194/126‑1 (MQ=255)
                                                                                     tttttttttttttttTAATTATAAAAAA‑AAAAAAAAAAAAAAACCCATT‑‑AAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                <  1:538096/127‑1 (MQ=255)
                                                                                     aTTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAATACC‑‑AATAAAAAAT‑‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                               <  2:683271/128‑1 (MQ=255)
                                                                                     aTTTTTTTAATTTTTTATAATAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                <  1:800624/128‑1 (MQ=255)
                                                                                      ttttttttttttttTATATTTAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                               <  2:2930303/128‑1 (MQ=255)
                                                                                      tttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACAAAAAACAAACCACAAATAATTAAAATACCCTTTTATACCCAATTATAttttt                               >  2:278313/1‑128 (MQ=255)
                                                                                      tttttttAATTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                               <  1:2866647/128‑1 (MQ=255)
                                                                                      attttttATTTGTTTATATTCAAAAAT‑AAAAAAAAAA‑AATCACC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                              <  1:1196883/127‑1 (MQ=255)
                                                                                      attttttATTTGTTTATATACAAAAAA‑AAAAAAAAAAAAAACCCC‑‑‑TAAAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                              <  2:3641617/127‑1 (MQ=255)
                                                                                       ttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAA‑TAAAAACAAA‑AAATATTAATAAAAATTACAAATTATAAAAAATTTTATTTTTaa                             >  1:3464468/1‑128 (MQ=255)
                                                                                       ttttttATTTGTTTATAATAAAAAAA‑AAAAAAAAAAAAATACCCTTAAAAAATAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                <  1:872502/128‑1 (MQ=255)
                                                                                       atattatatttattATATTAAAAAAA‑AAAAAAAAAATAAACCCC‑‑TAAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTAATTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                              <  1:2634638/116‑1 (MQ=255)
                                                                                        tttttATTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                             <  1:3762105/128‑1 (MQ=255)
                                                                                         ttttATTTTTTTATAATAAAAAAA‑AAAAAAAAAAAAAATACC‑CTTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                             <  1:152230/128‑1 (MQ=255)
                                                                                         ttatATTTTTTTTTATTAAAAAAT‑AAAAAAAAAAAAATTCACATAAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                              <  2:358156/125‑1 (MQ=255)
                                                                                          tttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAA‑‑‑TAAAAAAAAA‑ATATATTAATTAAAATTACATATAATACCAAATTTTATTTTTAaaaaaat                       >  1:3175061/1‑127 (MQ=255)
                                                                                           ttATTTTTTTATCTTAACAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                          <  1:3534162/128‑1 (MQ=255)
                                                                                               ttttttATTTTAAAAAAA‑AAAAAAAAAAAAATACCCTAAAAAATTAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                        <  1:2154154/125‑1 (MQ=255)
                                                                                               ttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACAAAAAAAAAA‑CATAATTTATAAAAGAACCCTTATAGAACACATTTTTTTTTTaaaaataat                      >  2:1729875/1‑123 (MQ=255)
                                                                                                 tttttatatataaaaa‑aaaaaaaaaaaaaaaaCCAATAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTAATTTTTAAAATAAGa                      <  1:3410849/116‑1 (MQ=255)
                                                                                                  tttttaaatacaAAA‑AAAAAAAAAAAAAAAACCCCTTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                     <  1:417883/119‑1 (MQ=255)
                                                                                                  tttaatatataaaaT‑AAAAAAAAAA‑AAAAACCATTAAAAATTA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                    <  2:3330518/117‑1 (MQ=255)
                                                                                                  ttaatataaaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAAATA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                    <  1:3219155/117‑1 (MQ=255)
                                                                                                     ataataaaaaaa‑aaaaaaaaaaaaaaACCCA‑‑TAAAAATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                 <  1:3689607/120‑1 (MQ=255)
                                                                                                       attaacaAAT‑AAAAAAAAAAAAAAAACC‑‑TTAAAAATT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa              <  1:3331400/124‑1 (MQ=255)
                                                                                                        ttCAAAAAT‑AAAAAAAAAAAAAAAACCCTT‑‑AAAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat             <  2:1787711/128‑1 (MQ=255)
                                                                                                           aaaaaT‑AAAAAAAAAAAAATAACCTTT‑‑‑AAAAT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata         <  1:1999902/126‑1 (MQ=255)
                                                                                                                   aaaaaaaaaaaaACCCC‑‑TTAAAAATT‑TAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc   <  2:3356879/128‑1 (MQ=255)
                                                                                                                     aaaaaaaCAATAACCTTAAAAATTAA‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatatt   <  1:698782/128‑2 (MQ=255)
                                                                                                                                |                                                                                                                        
AGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAAT‑AAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAA‑CTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCT  >  CP016816/202354‑202598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑