Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681687,9021.T65.6% 2420.6 / inf 1180intergenic (+29/‑831)JCVSYN2_00345/JCVSYN2_00350hypothetical protein/50S ribosomal protein L31
Reads supporting (aligned to +/- strand):  ref base . (214/190);  new base T (384/387);  total (599/581)
Fisher's exact test for biased strand distribution p-value = 3.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1434 total aligned reads displayed.

TTGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTA  >  CP016816/87775‑88029
                                                                                                                                  |                                                                                                                                     
ttGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCa                                                                                                                                        >  2:2172477/1‑128 (MQ=255)
ttGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCa                                                                                                                                        >  1:3736352/1‑128 (MQ=255)
  gtgtAACAAAAGTGGTTATTGAGTTGCAATTAAAGTTAAAATTTATAATAAAATTGATATTAATTGAAAGTCAAATGAATATTTAGATTTTGAATATCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt                                                                                                                                   <  1:3527907/128‑1 (MQ=255)
   tgtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATTGATTATAAAAC‑AAT‑CCA‑‑‑tt‑t                                                                                                                                 >  1:2526781/1‑128 (MQ=255)
   tgtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑t                                                                                                                                 >  1:3387548/1‑128 (MQ=255)
     tAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑ttt                                                                                                                               >  2:60301/1‑128 (MQ=255)
     tAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑ttt                                                                                                                               >  2:1052643/1‑128 (MQ=255)
       aCAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttta                                                                                                                             >  1:1983675/1‑127 (MQ=255)
       aCAAAAGTGGGTATTGAGTTGCAAGTAAAGTTCAAATTGTTTATAAAATTTATATTCATGGAAAGTCAAATTAATATTTAGATTTTTAATATCTGATTTAAATTGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑t                                                                                                                            <  2:1174396/128‑1 (MQ=255)
         aaaaGTTGTTATTGACTTGCAAGTAAATTTTAAATTGATAATAAAATTTATATTCATGGAAAGTCAAATTAATATTTATATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAA‑CCA‑‑‑tt‑tttt‑ttt                                                                                                                          <  1:1865114/128‑1 (MQ=255)
          aaaGTGGTTATTGAGTAGCAATTAAAGTGCAAATTGTTAATAAAATTGATATTAATGGTAATTCAAATGAATAATTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑tttt                                                                                                                         <  2:2999708/128‑1 (MQ=255)
            aGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑tttt‑tt                                                                                                                      >  1:1343090/1‑128 (MQ=255)
            aGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑tttt‑tt                                                                                                                      >  1:835742/1‑128 (MQ=255)
            aGTGGTTATTGAGTTGAAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAA‑AAT‑CCA‑‑‑tt‑ttat‑tttt‑tt                                                                                                                      >  1:737310/1‑128 (MQ=255)
             ttGGGTATTTATTTTCAATTAAAGTTCAAATTTATAATAAAATTTATTTTCATGGAAAGTCAAATGAATATTTATATTTTGAATATCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑tttt‑ttt                                                                                                                     <  1:2946196/127‑1 (MQ=255)
             gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTTATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGTATTATTAATA‑TAT‑‑CA‑‑‑tt‑attt‑tttt‑tttt                                                                                                                    >  2:788425/1‑128 (MQ=255)
                   aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑tttt‑ttttttaaa                                                                                                               >  1:1208771/1‑124 (MQ=255)
                   aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TTATTTT‑TTTT‑TTTTt‑aat                                                                                                               >  2:2622592/1‑128 (MQ=255)
                    ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑tt‑tttt‑tttt‑ttttttaata                                                                                                              >  2:2302935/1‑123 (MQ=255)
                    ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTt‑aataa                                                                                                             >  2:1810497/1‑128 (MQ=255)
                      gAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑ACA‑‑‑TT‑TTTT‑TTTTATTTTT‑AATaaa                                                                                                            >  2:287401/1‑128 (MQ=255)
                        tttttaattaaatttaaattTTATAATAAAATTTTTTTTAATGTAAATTAAAATTAATTTTTTTTTTTTGAATATTTTATTTAAATGTTTTTTTAAAA‑AAT‑CAA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAg                                                                                                         <  2:238923/120‑1 (MQ=255)
                           gCAATTTAATTTTAAATTTATAATAAAATTTTTTTTAATGGAAAGTCAAATTAATATTTATATTTTGAATATCTGATTTAAATTGATTATTAAAC‑AAT‑ACAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAc                                                                                                       <  1:3207664/128‑1 (MQ=255)
                            cAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTAGAATAGCTGATTTAAATGTAATATTAAAC‑AAT‑CCA‑‑‑TT‑TTTTATTTT‑TTTTT‑AATAAAAAAACt                                                                                                      >  2:2224911/1‑128 (MQ=255)
                             aaGTAATGTTAAAATTTTTATTAAATTTTATATAAATGTTAAGACAAATTATTATTTTGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAA‑CCA‑‑‑‑T‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTcac                                                                                                   <  1:2182102/128‑1 (MQ=255)
                              aGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TATT‑TTTTT‑aaaaaatactaaaat                                                                                                   >  2:2922635/1‑119 (MQ=255)
                               ttAAAGTTCAAATTTATAATAAAATTGATATTGATGGAAATTTAAATTAAAATTTTTATTTTGAAAAGCTGATTTAAATTGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTcaca                                                                                                  <  2:2100432/127‑1 (MQ=255)
                               gTAAATTTAAAATTGATAATAAAATTGATATTAATGGAAATTAAAATTAATATTTATATTTTTAAAAGCTGATTTAAATGGATTTTTAAAA‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTcac                                                                                                   <  2:1133415/128‑1 (MQ=255)
                               gTAAAGTTTAAATTGATAAAAAAATTTATATTCATGGAAAGTCAAATGTATATTTATATTTTTCATAGCTTATATAAATGGATTATTAAAC‑ACA‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTcac                                                                                                   <  2:3118443/128‑1 (MQ=255)
                                 taagtgaaaaTAGATAAAAAAATTGATTTTCATGGCAATGCAAATGAATATTTAGATTTTGATTAGCGGATTTAAATGGTTTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTcactt                                                                                                 <  2:3680340/121‑3 (MQ=255)
                                    gTTCAAATTGATAATAAAATTTTTATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACTTatg                                                                                              <  2:3470791/128‑3 (MQ=255)
                                           ttGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCaa                                                                                      <  1:425997/128‑1 (MQ=255)
                                            ttttaataaAATTTTTATTAATTGTAATTTAAATTAATATTTTTATTTTTTATTTCTTTTTTAAATTGTTTTTTAAAA‑AAT‑CAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCaa                                                                                      <  2:1282761/125‑1 (MQ=255)
                                            tGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAATAAAAACATAAGTGAGTCat                                                                                      >  2:280475/1‑127 (MQ=255)
                                             gattaaaaaaTTGATAATCTTGGTAAGTAAAATGAATATTTATTTTTTGAATAGCTGATTTAAATGGATTTTTAAAC‑AAT‑ACAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAAt                                                                                     <  2:3826326/122‑1 (MQ=255)
                                             gATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAATAATAAAATAAGATAGACAAtt                                                                                    >  1:2670810/1‑128 (MQ=255)
                                              ataataAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑‑T‑TTTT‑TTTT‑TTTTT‑AATAAAAAGCCTACGATAAGTTAGTCAAtgtc                                                                                  >  2:1986719/1‑125 (MQ=255)
                                                aataaAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAATACTAAAAAAATTAAGTAAATTg                                                                                   >  2:1572977/1‑128 (MQ=255)
                                                 attaaaTTGATTTTAATGTAAATTCAAATTAATATTTATATTTTTAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCg                                                                                 <  1:2809660/125‑1 (MQ=255)
                                                   aaaaTTTATATTAATTGAAAGACAAATTAATATTTATATTTTTATTATCTGATTTAAATTTATTATTAAAC‑AAT‑CAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGat                                                                               <  1:1063926/128‑1 (MQ=255)
                                                   aaaaTTGATATTCATTGAAATGCAAATTAAAATTTAGATTTTGAAAAGCTGATTTAAATGTTTTATTAAAC‑AAA‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGat                                                                               <  1:1922599/128‑1 (MQ=255)
                                                   aaaaTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAAACACAAAAGTTATACAATTgaaa                                                                                >  1:3684468/1‑125 (MQ=255)
                                                    aaaTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTTAAATAAAAACAAAAAAATAAGTAAGGAAATTGAGatt                                                                              >  2:2682749/1‑128 (MQ=255)
                                                     aaTTTATATTAATTTAAATTAAAATTAATATTTATATTTTTAATATCTGATTTAAATTGTTTATTAAAA‑AAT‑CAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGatta                                                                             <  2:136136/128‑1 (MQ=255)
                                                       ttttaatTTATGGTAATTTAAATTTATATTTATATTTTGTATATCTGATTTAAATGGATTTTTAAAA‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCTCATAAGTGAGTCAATTGCGattatt                                                                           <  2:3058981/123‑1 (MQ=255)
                                                           tatttattGTAATTCAAATTTATATTTATATTTTTTATATATTTTTTAAATTGTTTATTAAAA‑AAT‑AAATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaa                                                                        <  2:3883026/128‑1 (MQ=255)
                                                           tatTCCTGGAAACTGAAATGAATAATTATAATTTTAAAAGCTTATTTAAAAGGATTAATAAAC‑AAT‑ACA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatt                                                                      <  1:1486175/128‑1 (MQ=255)
                                                           tatTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCAAATAATTCAGTCAATTTCTATTATttaatt                                                                      >  1:601498/1‑128 (MQ=255)
                                                             ttcattgtatttCAAATGAATAATTAGATTTTGAATATCTGATTTAAATGGATTATTAAAA‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattat                                                                    <  2:1743618/117‑1 (MQ=255)
                                                             ttCATGGTAAGTTTATTGAATATTTAGATTTTTTATAGCTTCATTAAATGGATTAATAAAA‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatta                                                                     <  1:1271542/128‑1 (MQ=255)
                                                              tcatttaaatttaaaTTAATATTTTTATTTTTAATATATTATTTAAATTTATTATTAAAA‑AAT‑AAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattat                                                                    <  1:2323160/116‑1 (MQ=255)
                                                                aTGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAATCAAATAATTGAGTCAATTACAATTATttaattatta                                                                  >  1:1381666/1‑128 (MQ=255)
                                                                    aaaGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAAACTAACATAATTGATTCAATTGGGATTTTttaattattaatta                                                              >  1:290185/1‑128 (MQ=255)
                                                                     aaGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAATCAAATAATTGATTAAATTGCGATTTTTtaattattaattat                                                             >  2:3287580/1‑128 (MQ=255)
                                                                        ttaaaTTAATTTTTATATTTTTAATATTTTATTTAAATTGATTATTAAAA‑AAT‑CAATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTc                                                           <  1:2257404/126‑1 (MQ=255)
                                                                        taaaaTTAATTTTTATTTTTTTTATATATTATTTTAATTGATTATTAAAA‑AAT‑ACAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCt                                                          <  1:206319/126‑1 (MQ=255)
                                                                          aaaTGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAACTACTCACATAAGTGAGTACTTTGCGATTATTTATTTTTTAATTATTAttt                                                        >  1:905144/1‑128 (MQ=255)
                                                                          aaaTGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAATCACAAAATTTAGTAAATTTCTATTATTTAATTATTAAATATTAttt                                                        >  2:895837/1‑128 (MQ=255)
                                                                             tGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTTTTTATTAATTATACTTtga                                                      >  1:3272708/1‑128 (MQ=255)
                                                                              gAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGATGCAATATCGATTATTTAATTATTAATTATTCTTttatc                                                    >  1:3151273/1‑127 (MQ=255)
                                                                               aaTATTTAGATTTTTAATAGCTTCTTTAAATGTATTATTAAAA‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTTAAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTtgatga                                                   <  2:3401691/128‑1 (MQ=255)
                                                                                atatTTATTTTTTGAATATCTTATTTAAATGGTTTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAAc                                                 <  1:3040899/128‑1 (MQ=255)
                                                                                 tatTTATATTTTTAATATCTTTTTTAAATTTATTATTAAAA‑AAA‑ACAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAAc                                                 <  1:3574142/128‑1 (MQ=255)
                                                                                 tatTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑TATAAAAATACACAAATACGTGAGTCAATATCTATTATTTAATTTTTAATAATTCTTTTATGAAc                                                 >  1:1139883/1‑128 (MQ=255)
                                                                                   tttattttttGAAAATCTGATTTATATTGTTTATTAAAA‑AAT‑CCT‑‑‑AT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                              <  1:3623442/122‑1 (MQ=255)
                                                                                   tttATATTTTGAATATCTGATTTTAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTa                                               <  2:3347021/128‑1 (MQ=255)
                                                                                    tttctttttttaTAGCTTTTTTAAATGTTTTATTAAAC‑ATT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                              <  1:344784/117‑1 (MQ=255)
                                                                                    ttATATTTTTAATAGCTTATTTAATTGGTTTTTTAAAA‑AAT‑CAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                              <  2:2052274/128‑1 (MQ=255)
                                                                                    ttATATTTTTAATAGATTTTTTTAATTGTTTATTAAACAAAA‑CAA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                              <  2:3606270/128‑1 (MQ=255)
                                                                                      aGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAAAATAACATAATTTATAAAATTGCTATTTTTTAATTATTAATTTTTATTTTATTAAATAtt                                             >  1:1730499/1‑128 (MQ=255)
                                                                                       gaatttGAATAGCTTATTTAAATGGATTATTAAAA‑AAT‑ACATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAttt                                            <  1:3787582/125‑1 (MQ=255)
                                                                                         ttttGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAATAAAAACAAAAGTTATTATATTACTTATATTTAATTATTAATTATTATTTTATTAAAAATTTAca                                         >  1:2594173/1‑127 (MQ=255)
                                                                                           ttttatatgtGATTTTAATTTTTTATTTAAA‑AATACAA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctt                                       <  1:2993339/119‑1 (MQ=255)
                                                                                             ttatattttaTTTTAATTTATTATTTAAA‑AAT‑ACA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttct                                    <  1:661183/119‑1 (MQ=255)
                                                                                             taaTATCTGATATAAATGCTTATTTAAAA‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttc                                     <  2:6968/127‑1 (MQ=255)
                                                                                              tatatCTTATTTAAATTTTTTTATAAAA‑AAT‑ACA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttctt                                   <  2:1676241/127‑1 (MQ=255)
                                                                                               aTAGCTTTTTTAAATTGATTATTAAAC‑AAT‑TCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttctt                                   <  2:440168/128‑1 (MQ=255)
                                                                                                 aGCTGATTTAAATGGATTATTAAAC‑AAT‑CCATTTTT‑TTTT‑TTTT‑TTTTT‑AATAAAAAAACTCAAATAAGTTATTAAATTTCGATTATTTAATTATTAATTATTGTTTTATTAACTATTTaaatttatt                                   >  2:37531/1‑120 (MQ=255)
                                                                                                  tattaTTTTAATTTATTTTTTAAA‑AAT‑CAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAATCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAg                                <  1:1773567/124‑1 (MQ=255)
                                                                                                   cTGATTTAAATGGATTATTAAAC‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACAACAATAATTTATTAAATTGCGTTATTTTAATTTTATATTTTTATTTGATTAACAATTTACCTTACTTTat                                >  1:2475845/1‑127 (MQ=255)
                                                                                                    agatttactagtattattAAAC‑AAT‑ACA‑‑‑TT‑TTTTATTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGt                              <  1:1003817/116‑1 (MQ=255)
                                                                                                      aTTTAAATGGTTTATTAAAA‑AAT‑AAA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAAc                           <  2:1513311/128‑1 (MQ=255)
                                                                                                      aTTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTAACATAAGTGAGTCAATTGCGATTATTTATTTATAAATTATTCTTTTATGAAATATTTAACTTTATTTAGGTAAc                           >  1:48263/1‑128 (MQ=255)
                                                                                                       ttttaaaggcatattaAAC‑AATACAA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAAc                           <  1:966060/117‑1 (MQ=255)
                                                                                                       tttAAATGGATTATTAAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAATACTCAAATATGTTAGTCAATTGAGTTTATTTTATTTTTATTTATTATTTGATGTACTTTTTACATTTATTTAGGTAAc                           >  1:1636353/1‑128 (MQ=255)
                                                                                                       tttAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAATCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTTTTCTTTTATGAAATATTTACATTTCTTTTGGTaaat                          >  2:954975/1‑126 (MQ=255)
                                                                                                       aaaaaaTGGATTGTTTAAT‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCAAATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTATTTTATGAACTATTTAAATTTATTTAGTTaa                            >  2:51972/4‑128 (MQ=255)
                                                                                                        ttAAATTGATTATTAAAC‑AAA‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAATta                         <  2:2460140/128‑1 (MQ=255)
                                                                                                         tAAATGGATTATTAAAC‑AAT‑CCATT‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACAAACATAAGTTAGTAAATTTCGATTATTTAATTATTAATTATTATTTGATTAAATATTTACGTTTCTTTAGTTaaaa                          >  1:3849934/1‑126 (MQ=255)
                                                                                                            attgATAATTAAAC‑AAT‑TCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaatta                     <  1:2752587/125‑1 (MQ=255)
                                                                                                              gttttattaAAC‑AAT‑AAAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaattaa                    <  1:2107468/125‑1 (MQ=255)
                                                                                                                attaatAAAC‑AAT‑CAA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAattaatta                 <  2:3533804/128‑1 (MQ=255)
                                                                                                                  tattaAAA‑AAT‑CTAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTTGGTAACTAATTAATTAc                <  2:3200609/128‑1 (MQ=255)
                                                                                                                    ttaAAC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAAACCCATAAGTGATAAAATTGGGTTTATTTAATTATTAATTATTATGTGATGAAATATTAACATTTATTAAGTTAAATAattaattaaat              >  2:1420816/1‑125 (MQ=255)
                                                                                                                      aaaC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTTTTTAATTATTAATTATTATTTTATTAACTATTTACCTTTATTTAGGTAACTATTTATTTAACTat            >  1:1572342/1‑127 (MQ=255)
                                                                                                                        aC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGAATAACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTATTTTATTAACTATTTACATTTATTTATGTAACTAATTAATTACataata          >  1:2405701/1‑128 (MQ=255)
                                                                                                                        aC‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAAAAACACATAAGTTATTCAATTGATATTATTTAATTATTAATTATTATTTGATTAAATATTAACCTTTATTTATTTAAATAattaattaatatata          >  2:1898316/1‑121 (MQ=255)
                                                                                                                         c‑AAT‑CCAT‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTAACATAAGTGAGTAAATTGAGATTATTTAATTATTAATTATTATTTTATTAACTATTTAACTTTCTTTAGTTAACTAATTAATTACCTAatat         >  1:285618/1‑128 (MQ=255)
                                                                                                                           aaT‑CCA‑‑‑‑T‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTATTTGATGAACTATTTACCTTTATTTAGTTAAATAATTAATTACCTAAtattat      >  2:2556333/1‑128 (MQ=255)
                                                                                                                            aT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGGGAGGCAAGTGCGATTATTTAATTATTAATTATTATTTTATAACCTATTTACCTTTAATTATGTAACTAATTAATTACCAATaattat      >  1:3324102/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                                     
TTGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTAAAC‑AAT‑CCA‑‑‑TT‑TTTT‑TTTT‑TTTTT‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTA  >  CP016816/87775‑88029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑