BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 34945	554 (0.350)	779 (0.450) +AAA	138/216	15.1	56.3%	intergenic (+49/+117)	JCVSYN2_00105/JCVSYN2_00110	ABC transporter permease/cell division protein FtsH
*	?	CP016816	34946 =	608 (0.340)	779 (0.450) +AAA	138/216	15.1	56.3%	intergenic (+50/+116)	JCVSYN2_00105/JCVSYN2_00110	ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1467 total aligned reads displayed.

TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34819‑35073

 ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTATTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a                                                                                                                                     >  1:1583528/1‑128 (MQ=255)

  tACTTATTATTGAGTTTCAACAAAAAGAGTAACAAATGTTTAACAAAGTTAAATGGTATGGGATGTTGTTTAATAATAAAATATAAAACCAAAAACTTTGTGTTTGGTTTTTTTATTT‑AAT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑a                                                                                                                                  <  1:1458362/128‑1 (MQ=255)

      ttttttTGATTTTCAACAAAAATTGATATAAATTCTTAACCAATTAAAATTTAAATTTTATTTTATTAAAAATAAAATATAAAACAAAATACATTTTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaa                                                                                                                              <  1:1693690/126‑1 (MQ=255)

      tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaa                                                                                                                              >  1:2118938/1‑128 (MQ=255)

       cttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATTCTAAGTTAAGTTTATGAATAATAAAATATTAAACCAAATACATATTTTTAGATTTATTTATAT‑AAT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaaa                                                                                                                             >  2:2736154/1‑128 (MQ=255)

        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACCTTGTGTTAGGTTTTGTTATTT‑ACT‑A‑A‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaa                                                                                                                            >  1:2511162/1‑128 (MQ=255)

        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaa                                                                                                                            >  2:1311456/1‑128 (MQ=255)

        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaa                                                                                                                            >  1:3478862/1‑128 (MQ=255)

        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaa                                                                                                                            >  1:3345269/1‑128 (MQ=255)

        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTATTTTTTTTTTTTTTATTT‑AAT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaaaa                                                                                                                            >  2:1384056/1‑128 (MQ=255)

         ttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGATAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTGTAATATGTTTTTATATTT‑AAT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaaaaa                                                                                                                           >  2:3837283/1‑128 (MQ=255)

           aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaa                                                                                                                         >  1:1959987/1‑128 (MQ=255)

              aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaaa‑aa                                                                                                                     >  1:1048875/1‑128 (MQ=255)

              aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTCTGTATTATATTATTATAT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaaa‑aa                                                                                                                     >  2:80834/1‑128 (MQ=255)

                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTCGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaat                                                                                                                >  2:932518/1‑126 (MQ=255)

                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACAAATTGTTTGTATTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaaa                                                                                                                >  2:2592317/1‑126 (MQ=255)

                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAAAGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaaa                                                                                                                >  2:2153668/1‑126 (MQ=255)

                    aaaaaaaattataataaATTCTTAACCAATTAAAATTATAAGTGAATTTTTTTAAAAATAAAATATTAAAACAAATAAATTGTTTTTTTTTTTTTTTTTT‑AAT‑ATT‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑Aataata                                                                                                                <  1:1814608/117‑1 (MQ=255)

                     acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaaaat                                                                                                              >  1:3781697/1‑124 (MQ=255)

                     acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTATTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaaaaa                                                                                                              >  1:383855/1‑124 (MQ=255)

                     acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACAATTTGTTTTGTTATTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaaaaa                                                                                                              >  2:1507873/1‑124 (MQ=255)

                             agTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTTTGTTTTGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑T‑‑‑a‑a‑‑aaaaaaaaaaa‑aaaaaaaaataatataa                                                                                                      >  1:2774042/1‑116 (MQ=255)

                              gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GA‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑AAAttttaat                                                                                                     >  2:3317864/1‑124 (MQ=255)

                              gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑Aaaaataataaaaattaa                                                                                                     >  2:265348/1‑117 (MQ=255)

                                aaGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGATTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAAAA‑TAAttttaata                                                                                                    >  1:3724358/1‑123 (MQ=255)

                                  taaaTGCTTAACAAATTACAATGATAATTTAAGTTGATTAATAATAAAATATTAAACAAAAAACATTGTGTTTGGTTTTTTTATTT‑AAT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACtat                                                                                                <  1:3406730/127‑1 (MQ=255)

                                    aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAAtttatataattt                                                                                                >  1:1643103/1‑119 (MQ=255)

                                       ggtGAAACAAGTAAAATGCTAAGTTAATTTTATTAAAAATAAAATTTTAAACCAAATAAATTTTTTTTGGTTTTTTTATTT‑AAA‑ATT‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATaaaa                                                                                            <  1:3101542/126‑1 (MQ=255)

                                          gAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTTGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑AGA‑‑AAAAAAAAAAA‑AAAAAAA‑AAATTTACAAACAAAAAAAAAt                                                                                         >  2:1156235/1‑128 (MQ=255)

                                             ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAAAA‑TAATTTACATAATATAAAAAATTg                                                                                       >  1:89899/1‑128 (MQ=255)

                                             ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAATA‑AAATTTTAATAATATAAAAAAttt                                                                                       >  1:1263905/1‑127 (MQ=255)

                                             ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AAAAAAATTAATTTTAATTATATAAAAAAtttt                                                                                      >  1:411030/1‑126 (MQ=255)

                                               aaGTACAATGGTAAGTGAATTTGTTGAATAATTAATTATTAAAACAAAAACATTTTGTTTGGTTTTTTTATTT‑AAA‑ATT‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGttt                                                                                    <  1:3669180/128‑1 (MQ=255)

                                               aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAAAA‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTTAATACTATAAAAAATAGt                                                                                      >  1:322509/1‑128 (MQ=255)

                                                     aaagCTAAGAGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTCATTGGTTTTTAAATTT‑AATAA‑T‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAACAAAAAAA‑AAATAAGAAAACTATAAAAAAttttaaatcaa                                                                               >  2:3887524/4‑119 (MQ=255)

                                                         ttaagttaagtTGATGATTAATAAAATTTTTAAACAATTAATTTTTGTTTGGTTTTTTTATTT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATaa                                                                          <  1:965112/127‑1 (MQ=255)

                                                         cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAAAA‑AAATTAAAAAAATAAAAAAAATTATTTTT‑Aaaaaaa                                                                          >  1:2659635/1‑128 (MQ=255)

                                                            aGTGAATTTTATTAAAAATAAAATATTAAACAAAAAAAATTGTGTTTGGTTTTTTTATTT‑AAA‑A‑T‑TTAAAAAA‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATa                                                                           <  1:64025/128‑1 (MQ=255)

                                                                 attttattaataatAAAATTTTAAACAAAATAAATTTTTTTTGGTTTTTTTTTTT‑AAT‑T‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAg                                                                  <  2:1617197/120‑1 (MQ=255)

                                                                  tttttttaaaaataaAAAATTAAACAAAATAATTTTTTTTTTTTTTTTTTTTTTAAAT‑T‑T‑TA‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAgg                                                                 <  1:782357/118‑1 (MQ=255)

                                                                  ttttctttaaaataaAAAATTAAAACAAAATATTTTTGTTTGTTTTTTTTATTTAATT‑T‑T‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGa                                                                <  2:2423539/118‑1 (MQ=255)

                                                                  gtagatgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AAAAAAA‑AAATTTTAATAAAAAAAAAAATTTTTTTT‑Aaaaaaataattaaat                                                                 >  2:1760350/4‑119 (MQ=255)

                                                                  gTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTTAATAAAATAAAAAATTATTATT‑AAAAAAAATaaaaaaa                                                                 >  1:1324154/1‑122 (MQ=255)

                                                                     tattaataatAAAATATTAAACCAAATATATTTTGTTTGGTTTTTTTTTTT‑ATT‑T‑T‑TTTA‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAg                                                               <  2:3742146/124‑1 (MQ=255)

                                                                      atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAAAA‑TAATTTTAAAAATAAAAAAAATTTTTTTT‑AAAAAAAGTAttaattataa                                                             >  1:833982/1‑120 (MQ=255)

                                                                       ttataaaaaaaaTATTAAAAAAAAAAATTTTTTTTTGGTTTTTTTTTTT‑ATT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTaa                                                            <  2:3196382/120‑1 (MQ=255)

                                                                       ttaattatAATATATTAAAAATAATACAATTTTTTTTGTTTTTTTAATT‑AAT‑T‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGtta                                                            <  1:2861444/126‑3 (MQ=255)

                                                                       tcaataatATATGTTTATACAAAATAATTTTGGTTGGGTTTTTTTTTTT‑ATT‑T‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTaa                                                            <  2:2232537/126‑1 (MQ=255)

                                                                       gtaataatAAAATTTAAAACAAAAATAATTTTGTTTGTTTTTTTTTTTT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTaa                                                            <  1:2060363/126‑1 (MQ=255)

                                                                            aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑AATAAAAAAAAAAA‑AATAATA‑TAATTTGCATAATAAAAAAAATTGTTTTT‑CAAATAAGTATAAGGGAGTAAATTTa                                                       >  2:3495210/1‑128 (MQ=255)

                                                                             ataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATATTT‑TAATTTGCATACTATAAAAAATTGTTTTT‑AAAATAAGTATTAAGTAGTAAATTTaa                                                      >  1:362347/1‑128 (MQ=255)

                                                                              taaAATATTAAACCAAATACATTTTTTTTGGTTTTTTTATTT‑AAT‑T‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTaaa                                                     <  1:3003192/128‑1 (MQ=255)

                                                                                 atttttAAACAAAATAATTTGTTTTTGGTTTTTTTATTT‑AAT‑A‑T‑TTAA‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTaaaaa                                                   <  2:3145139/124‑1 (MQ=255)

                                                                                 aaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAAAA‑AAATTTAAATAATAAAAAAAATTTTTTTT‑CAAATAATAATTAAGGATAAAATTTaaaaaa                                                  >  2:3021206/1‑128 (MQ=255)

                                                                                 aaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTAAGTAGTAAATTTAAAAAAcc                                                >  1:2395974/1‑128 (MQ=255)

                                                                                  aGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAAAA‑TAAATTGCAAAAAATAAAAAATTTTTTTT‑AAAATAATTATAAATGATAAAATTTAAAAAAc                                                 >  2:3439953/1‑128 (MQ=255)

                                                                                   tttttaaCAAAATATATTTTTGTGGGTTTTTTTATTT‑ACT‑A‑TAT‑‑‑‑‑‑T‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAATATTGTTTTT‑CAAATAAGTATTCAGGAGTAATTTTAAAAAACCa                                               <  2:1963582/123‑1 (MQ=255)

                                                                                    aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑‑‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAATTTTAAAAAACAAaga                                            >  1:3306592/1‑128 (MQ=255)

                                                                                     ttAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑AAAATAAGTATTCAGGATTAAATTTAAAAAACCAaga                                            >  1:1138366/1‑128 (MQ=255)

                                                                                     ttAAAAAAAATAAATTTGTTTTGTTTTTTTTATTT‑AAT‑T‑T‑TTAA‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCa                                               <  1:3536786/128‑1 (MQ=255)

                                                                                      ttaaataattaaaTTTTGTTTGTTTTTTTTTTTT‑TTT‑T‑T‑T‑‑‑‑‑‑TAA‑A‑A‑‑AAAAAAAAAAA‑AATAAAA‑TAATATGCATACTATAAAAAATTGTTTTT‑CTAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                             <  2:2035769/116‑1 (MQ=255)

                                                                                      tAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATTATA‑TAATTTAGTTA‑AAAAAAAAATTATTTTTAAAAATAATTTTAAAGGTTTAAATTTAAAAAAACata                                             >  2:565830/1‑126 (MQ=255)

                                                                                      tAAACCAAATAAATTGTTTTTGTTTTTTTTATTT‑AAT‑T‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                             <  1:2592317/128‑1 (MQ=255)

                                                                                        aaCCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATTATA‑TTTTTTGATTTATATAAAAATTTTTTTTT‑AAAAAAATTAATAATGATTAAATTTAAAAAACaaatat                                           >  1:1538626/1‑125 (MQ=255)

                                                                                        aaCCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GA‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGAATAAAATAAAAAATTTTTTTT‑TAAAAAATTATTAAGTATTAAATTTAAAAAACaaaaata                                          >  2:3084621/1‑124 (MQ=255)

                                                                                          aaaaataaatTTTGTTTGTTTTTTTTTTTT‑AAT‑T‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAttt                                         <  1:1754855/126‑1 (MQ=255)

                                                                                           cAAACACAATGTATTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑AAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATc                                  >  2:1677071/1‑128 (MQ=255)

                                                                                            aaaTACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAATA‑AAATTTTAAAAAAAAAAAAAATTTTTTTT‑AAAATAATTATTAATTAATAAAATTaaaaaaaaaatatttaa                                       >  2:2360165/1‑117 (MQ=255)

                                                                                            aaaTAATTTTTGTTTGGTTTTTTTATTT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                       <  2:3251704/128‑1 (MQ=255)

                                                                                             aaaaCAATGTTTTTGGTTTTTTTATTT‑AAT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                      <  1:598319/125‑1 (MQ=255)

                                                                                             aaTAAATTGGGTTTGGTTTTTTTTTTT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                      <  2:3374449/128‑1 (MQ=255)

                                                                                                aCAATGTATTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAATA‑AAATTTAAAAAATATAAAAAATTTTTTTT‑AAAATAATAATAAAATATTAAATTTAAAAAAAAAATATTTAAAAAt                                   >  1:1374733/1‑128 (MQ=255)

                                                                                                 aattttttttGTTTTTTTTAATT‑AAT‑A‑T‑T‑‑‑‑‑‑T‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                                <  1:480221/121‑1 (MQ=255)

                                                                                                     gtatttGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGAATAATATAAAAATTTTTTTTT‑AAAATATTTATTAAGATATTAATTTAAAAAAAAAAATTTTATAAATCtttg                              >  1:1001909/4‑126 (MQ=255)

                                                                                                      tgtTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAAAA‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTTAATAATAAAAAAAATTTTTTTT‑AAATAAATTATTAATGATAAAATTTAAAAAAAAAAAATTTAAAAATCTTgt                              >  1:2345682/1‑127 (MQ=255)

                                                                                                      tgtTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAATAGTTTTAAATCTTGGt                             >  1:3048984/1‑128 (MQ=255)

                                                                                                      tatttGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑AAATTTTAATAAATAAAAAAATTTTTTTT‑CAAAAAATTAATATGAAGTAAATTTAAAAAAAAAATATTTATAAAtataagt                             >  1:2297198/3‑122 (MQ=255)

                                                                                                       ttttGTTTTTTTTATTT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATTATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtt                            <  2:2508695/127‑1 (MQ=255)

                                                                                                       ttttGGTTTTTTTATTT‑ACT‑T‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGTAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtt                            <  2:2087638/127‑1 (MQ=255)

                                                                                                         ttGTTTTTTTTATTT‑ACT‑ATT‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGttttt                         <  1:720796/128‑1 (MQ=255)

                                                                                                          tGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGGATACTATAAAAAATTATTTTT‑AAAAAAAGAATTCAGGATTAATTTAAAAAAACCAAGATTTTTAACTATTGAttttt                         >  1:2455103/1‑128 (MQ=255)

                                                                                                          tGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAAAA‑TATTTTGAATAATATAAAAAATTTTTTTT‑AAAATAATTATTAAGTAGTAAATTTAAAAAACCAAGAATTATAAATATAGGatttt                         >  2:1213069/1‑128 (MQ=255)

                                                                                                          tGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AAAAAAA‑TAATTTTAAAAAAAAAAAAAATTTTTTTT‑AAAATAATTATTAATTATTAAATTTAAAAAAAAAATATTTAAAAATATtttttttt                         >  2:2849125/1‑128 (MQ=255)

                                                                                                          tGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAATTATTCAGTAGTAAATTTAAAAAACAAAGATTTATAAATCTTTGttttttt                       >  2:452831/1‑127 (MQ=255)

                                                                                                           gttttttttATTT‑AAA‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                        <  2:1078423/126‑1 (MQ=255)

                                                                                                           ggTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTTCATAATATAAAAAATTTTTTTA‑AAAAAAATTATTAAGTATTAAATTTAAAAAAAAAAGAGTAATAAATATTGGtttttt                        >  1:542610/1‑128 (MQ=255)

                                                                                                             ttttttttttT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                      <  2:863011/128‑1 (MQ=255)

                                                                                                              ttttttATTT‑ACT‑A‑T‑T‑‑‑‑‑‑GAAAA‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑AAAATAAGTATTAAGGAGTAAATTTAAAAAACCAAGCTTTATAAATCTTGATTTTTTGt                      >  1:3171704/1‑128 (MQ=255)

                                                                                                               tttttATTT‑AAT‑ATT‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta                   <  1:1217918/128‑1 (MQ=255)

                                                                                                               tttttATTT‑AAT‑A‑T‑TTA‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                    <  1:3576943/128‑1 (MQ=255)

                                                                                                                ttttATTT‑ATT‑ATT‑T‑‑‑‑‑‑A‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                  <  1:2954143/128‑1 (MQ=255)

                                                                                                                   tattt‑aCT‑A‑T‑T‑‑‑‑‑‑GAA‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGAATAATTTAAAAAATTTTTTTT‑AAAATAATTATTAAGGAGTAAATTTAAAAAAAAAAAATTTATAAATATTGTTTTTTTTTatatat                >  1:2221652/1‑128 (MQ=255)

                                                                                                                                tttaatattttaa‑a‑‑aaaaaaaaaaa‑aaTAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtatta              <  2:2919043/116‑1 (MQ=255)

                                                                                                                                     tttttaaa‑a‑‑aaaaaaaaaaa‑aaTAATA‑TAATTTGCATACTATAAAAATTTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATattattatt         <  2:3672779/121‑1 (MQ=255)

                                                                                                                                      tttttaa‑a‑‑aaaaaaaaaaa‑aaTAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCATGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt        <  2:3583330/122‑1 (MQ=255)

                                                                                                                                      tttttaa‑a‑‑aaaaaaaaaaa‑aaTAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt        <  1:1903662/122‑1 (MQ=255)

                                                                                                                                      atttaaa‑a‑‑aaaaaaaaaat‑aaTAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt        <  2:1874051/122‑1 (MQ=255)

                                                                                                                                       ttttaa‑a‑‑aaaaaaaaaaa‑aaTAATA‑TAATTTTCATTATATAAAAAATTGTTTTT‑TAAATTATTATTTATGTTTAAATTTTAAAAAACAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTg       <  1:2702630/123‑1 (MQ=255)

                                                                                                                                          aaa‑a‑‑aaaaaaaaaaa‑aaTATTA‑TAATTTTCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGATATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCt    <  2:744410/126‑1 (MQ=255)

                                                                                                                                            a‑a‑‑aaaaaaaaaaa‑aaTAATA‑TAATTTGCATACTATTAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCttt  <  1:2017242/128‑1 (MQ=255)

TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTT‑ACT‑A‑T‑T‑‑‑‑‑‑G‑‑‑A‑A‑‑AAAAAAAAAAA‑AATAATA‑TAATTTGCATACTATAAAAAATTGTTTTT‑CAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34819‑35073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.