Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_vch_tpiA	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	1978503	1979278	776	37 [0]	[0] 37	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 1978502	0 (0.000)	37 (1.210)	30/266	0.1	100%	noncoding (1978502/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1979279 =	0 (0.000)					noncoding (1979279/4641682 nt)	repeat_region	repeat region

CTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913_3_vch_tpiA/1979132‑1979417                                                                                                                                                    |                                                                                                                                           gaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta                                                                                                                                           <  1:445815‑M2/2‑1 (MQ=255)    atgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgatttttaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                        <  1:37959‑M2/5‑1 (MQ=255)    atgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgtgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                        <  1:499151‑M2/5‑1 (MQ=255)        gtctttacacttatctaagatttttcctaaatcgacgcaactgtagtcgtcggtgcgtacacatacaacggaggggggctgcgattttcaataatgcgtgatgtagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                    <  1:446600‑M2/9‑1 (MQ=255)           tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGTCATAc                                                                                                                                 >  2:537538‑M2/138‑149 (MQ=255)           tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                 >  1:467049‑M2/138‑149 (MQ=255)           tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcaaatcccacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                 >  2:82557‑M2/138‑149 (MQ=255)                  ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                          <  1:361877‑M2/19‑1 (MQ=255)                  ttatctaagatttttcctaaatcgacgcaactgtactcgtcaatacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                          >  1:379689‑M2/131‑149 (MQ=255)                            tttgtcctatatagtagcaactgtattcgtcactacacgcacatacaactgaggggtgctgttattttcaataatgcgtgatgcacatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                                                                <  2:388256‑M2/29‑1 (MQ=255)                                tcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                            >  1:563846‑M2/117‑149 (MQ=255)                                  ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattccttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAAt                                                                                                          >  1:438081‑M2/115‑149 (MQ=255)                                      atcgagtcaactgtactcgtaactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaatcactcaattacttaacataaatgTAGCAGCCAGACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                      <  1:265982‑M2/39‑1 (MQ=255)                                      atcgacgcaactgtactcctcactacacgcacatacaacggagggtggctgcgattttcaataatgcgtgatgcagatcacacaaaattttcaattacttaacataaatgTTCTTCACAAACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                      <  1:266064‑M2/39‑1 (MQ=255)                                                   tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgtgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTGTTCGGGATAGCTCAAACTATTAAATTGTTTTTc                                                                                         >  2:135050‑M2/98‑149 (MQ=255)                                                                acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                            >  2:358634‑M2/85‑149 (MQ=255)                                                                  gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                          >  1:341326‑M2/83‑149 (MQ=255)                                                                    acatacaacggaggggggctgcgattttcaataatgcgtgatgaagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                                                        <  2:260637‑M2/69‑1 (MQ=255)                                                                          aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacagtcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATTTGTTAAAAAGTTTTTCGCTATGCTAGAAAGCAAAAAAGa                                                                  >  2:496640‑M2/75‑149 (MQ=255)                                                                             ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                               >  2:315474‑M2/72‑149 (MQ=255)                                                                                       tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTATTTTCAGTTGATTTCAATCTTTTAAAAAATTTTTCCCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                     <  1:101314‑M2/88‑1 (MQ=255)                                                                                           attattaatgatgcgtgatgcacatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGTAAAAATGGAACAGGAATAATCGaaa                                                 <  2:60396‑M2/92‑1 (MQ=255)                                                                                            ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                >  2:565826‑M2/57‑149 (MQ=255)                                                                                            ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAAAGGAATAATCGAAAt                                                >  2:26863‑M2/57‑149 (MQ=255)                                                                                                 aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                           <  2:359200‑M2/98‑1 (MQ=255)                                                                                                           gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTTCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 <  1:229231‑M2/108‑1 (MQ=255)                                                                                                           gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGTTACGCTAGTAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 <  1:147004‑M2/108‑1 (MQ=255)                                                                                                                  atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATATGTTAAAAAATTTTTAGCTACTTCAACAAGCAAAAATGAAACAGTAATTATTGAAATTGGAGGTTGCCCACAGTCaaaa                          >  2:16821‑M2/35‑149 (MQ=255)                                                                                                                     acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                       <  1:561935‑M2/118‑1 (MQ=255)                                                                                                                     acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                       <  1:358634‑M2/118‑1 (MQ=255)                                                                                                                       acaaaacactcaattacttaacataaatgTATAAATCATACTTTTGTTTTGGGTGTATTTCAATCTGGTAAAAAATTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGCATAATCGAAATGGGATGTTGCGCACAGTCAAAataagt                     >  2:320043‑M2/30‑147 (MQ=255)                                                                                                                              actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa              >  1:343856‑M2/23‑149 (MQ=255)                                                                                                                               ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa             <  2:476190‑M2/128‑1 (MQ=255)                                                                                                                                  aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                          >  1:162522‑M2/19‑133 (MQ=255)                                                                                                                                  aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                          <  2:162522‑M2/115‑1 (MQ=255)                                                                                                                                       cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTGCGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat     >  2:347580‑M2/14‑149 (MQ=255)                                                                                                                                          aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg  >  2:510926‑M2/11‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                           CTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913_3_vch_tpiA/1979132‑1979417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑