| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 2603295 | 26 (0.800) | 5 (0.160) | 5/268 | 3.6 | 17.3% | noncoding (2603295/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 2603299 | 23 (0.750) | noncoding (2603299/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTGCTTCGTAAAAATGTACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTACCCGGCACGTTTCATACACAGGTCACCCCCTCATTACTGTTGCT > NC_000913_3_vch_tpiA/2603151‑2603424 | tgtgCTTCGTAAAAATGTACGGTATTACTTTCTGTGGTGCGCCTGGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTtgg < 1:178827/149‑1 (MQ=255) ttCGTAAAAATGTACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTtggctggc < 1:516920/149‑1 (MQ=255) tAAAAATGTACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCg < 2:237168/149‑1 (MQ=255) aaacaTGTACGTTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGTTCGTCGCTATGTTACTGCTTGTGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGa < 1:116036/149‑1 (MQ=255) tGTACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATa < 2:378884/149‑1 (MQ=255) gTACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGCCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCGCTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATaa < 2:259635/149‑1 (MQ=255) tACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACTCTCAAAAGGCACACGAAGTCCCAAATACGATGATCGTCCCCATAGTACAACTCGCTGCACTCTGCGTATTAATTCCGCTTACTCCCAGTCAGCTAACACCAAAGATAAt > 2:419506/1‑149 (MQ=255) agtACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCATCGAAGATAATGCatat < 2:62529/147‑1 (MQ=255) tgCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAAAACCAAATACGATGATCGTCGCCATACTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATACATATTGCCAATGCGATTa > 1:92682/1‑149 (MQ=255) caGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCata < 2:523670/103‑1 (MQ=255) caGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCata > 1:523670/1‑103 (MQ=255) cGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCTTTTTTTTACTTATACTCTTACCGCCACTGTCGCCAGCGGAATAGCACTTGTAccc < 1:12891/149‑1 (MQ=255) gtcgCCAGGCGACTTCTCGCTGCACTCTTCGTATGAATGCCGCTTAGTGCCAGTGGGCTGGCACCGAAGATAATGCATATGGCCCATGCGTTTACCAATACCCCTCCCGCCACGTTCTCCAGCGGAATAGCACTTGTACCCGTCACGtt < 2:114996/149‑1 (MQ=255) tcgCCATGCTACTGCTCGCGGCACTCTGCGTATTTATTGCGCTTAGTGCCAGTTGGCTGGCATCGAATATAATGCATATTGCCCTTTCGTTTACCAATATTCTTCCCGCTTTTGTCGTCAGCGGAATAGCACTTGTACCCGGCACGttt < 1:110554/149‑1 (MQ=255) ccATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCAc < 1:310487/129‑1 (MQ=255) ccATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCAc > 2:310487/1‑129 (MQ=255) cTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAATGCCAGTTGGCTAGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGACGCCAGCGGAATAGCACTTGTACCCGGCACGTTTCATAcaca > 1:319087/1‑149 (MQ=255) cTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGTACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCTCCACTGTCGCCAGCGGAATAGCACTGGTACCCGGCACGTTTCATACACAGGTCAc < 1:476560/149‑1 (MQ=255) gcgGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTACCCGGCACGTTTCATACACAGGTCAcccc > 1:580768/1‑149 (MQ=255) aCTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGAAACAAAGATAATGCATATTGCCAATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTACCGGGCACGTTTCATACACAGGTCACCCCCTCAt > 1:357802/1‑149 (MQ=255) tGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGACACCGAAAATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTACCCGGCACGTTTCATACACAGGTCACCCCCTCATTACt > 1:47222/1‑149 (MQ=255) gccgaTTAATTCCGCTTAGGCCCAGGTGCCTGGTACCCAAGACAATGCTTTTCGCCCTTGCTTTCTCCAATACCCCCCCCCCCGCTGCCGCCAGCGGTAGACCACTTTTACCCGGCACGTTTCATACACAGGTCCCCCCCTAACTACTg < 2:312129/145‑1 (MQ=255) ttAATTGCGCTTAGGGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTACCCGGCACGTTTCATACACAGGTCACCCCCTCATTACTGTTGCt < 2:508250/149‑1 (MQ=255) gcTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTa > 2:36484/1‑97 (MQ=255) gcTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTa < 1:36484/97‑1 (MQ=255) | TGTGCTTCGTAAAAATGTACGGTATTACTTTCTGTGGTGCGCCGCGCAGTACACACGCTGAAGAGGCACAGGAAGTGCCAAATACGATGATCGTCGCCATGCTACTGCTCGCGGCACTCTGCGTATTAATTGCGCTTAGTGCCAGTTGGCTGGCACCGAAGATAATGCATATTGCCCATGCGTTTACCAATACCCCTCCCGCCACTGTCGCCAGCGGAATAGCACTTGTACCCGGCACGTTTCATACACAGGTCACCCCCTCATTACTGTTGCT > NC_000913_3_vch_tpiA/2603151‑2603424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |