New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2118491 =	NA (NA)	7 (0.230)	6/268	3.2	17.1%	noncoding (26/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	3708329 =	34 (1.110)					noncoding (58/86 nt)	REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP267 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGC  >  NC_000913_3_vch_tpiA/3708182‑3708472                                                                                                                                                    |                                                                                                                                                aaaTATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTATTGGATAGTGAGATATGGGGCGCAAATTTGGCAGAGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGc                                                                                                                                                >  1:257636/1‑149 (MQ=255)              gACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCTGCATTCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGt                                                                                                                                   <  1:29676/149‑1 (MQ=255)                cAATTGTTTCTGTCACAAATCCGGTAATGGATAGTGAGATAAGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCt                                                                                                                                 <  2:349482/149‑1 (MQ=255)                 aaTGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCtt                                                                                                                                >  2:175919/1‑149 (MQ=255)                        tCTTTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                                         <  1:85787/149‑1 (MQ=255)                            tCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTTTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTc                                                                                                                                  >  1:233504/1‑136 (MQ=255)                            tCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTc                                                                                                                                  <  2:233504/136‑1 (MQ=255)                                aaaTCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGTGCCGCTGATGCGTCTTATCAGGCATaattcg                                                                                                                 >  2:100617/1‑144 (MQ=255)                                aaaTCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACACTGACGCGTCTTCTCCGGCCTACgtcg                                                                                                                 >  2:231160/1‑149 (MQ=255)                                 aaTCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACgtcga                                                                                                                >  1:474902/1‑149 (MQ=255)                                 aaTCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACgtcga                                                                                                                <  1:333293/149‑1 (MQ=255)                                  aTCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACgtcgag                                                                                                               <  1:456967/149‑1 (MQ=255)                                      gTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGCCACGACCCTTCAGGCCTACgtcgagtcga                                                                                                           >  1:283316/1‑149 (MQ=255)                                            ggATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTcc                                                                                                     <  2:474902/149‑1 (MQ=255)                                                     gaTATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCg                                                                                            <  1:507082/149‑1 (MQ=255)                                                               gcAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCAACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGACCCTCCCTGCCCCCGGAGGTtctct                                                                                  >  2:100988/1‑148 (MQ=255)                                                                 aaaGTTGGCAGTGAAATGTGTGTCGGGTAGGTCGAATAAGGCGGGGGTGGAACATCCAACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc                                                                                <  1:100617/149‑1 (MQ=38)                                                                   aTTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCTTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt                                                                              <  1:175919/149‑1 (MQ=255)                                                                      tGGCAGGGATATTTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCGGCTTTCTGTAATGGCTTGAACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGTGTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCAt                                                                           <  1:100988/149‑1 (MQ=37)                                                                                 tttgtgtCGTGTAGGTCGAATACGGCTGTGGGGCCTCATGTGACAATGGCCGTCACATTTGCCTGATGCGACGCTGACTCGTCTTATCAGGCCTACGTCGGGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt                                                                <  2:579487/147‑1 (MQ=25)                                                                                     tgtCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                                         <  1:358987/88‑1 (MQ=255)                                                                                     tgtCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                                         >  2:358987/1‑88 (MQ=255)                                                                                       acGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGCTGCGACGCTGACGCGTCTTCTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaa                                                          >  2:432503/2‑149 (MQ=255)                                                                                         gtgtAGTTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                        <  1:466551/149‑1 (MQ=255)                                                                                              ggTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACACTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTg                                                   <  1:432503/149‑1 (MQ=255)                                                                                               gTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACACTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTgg                                                  >  1:26974/1‑148 (MQ=255)                                                                                                   aaTAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGt                                              >  1:381692/1‑149 (MQ=255)                                                                                                           ggTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAAc                                                                                                         <  1:316066/82‑1 (MQ=255)                                                                                                           ggTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAAc                                                                                                         >  2:316066/1‑82 (MQ=255)                                                                                                            gTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATACAACAATGACGCGTCTTATCAGACCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGc                                     >  1:148593/1‑149 (MQ=21)                                                                                                                 gccgcATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTCAGCAGGCTTTTc                                >  2:318673/1‑149 (MQ=255)                                                                                                                                 gCCGGCAACTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGTAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGAt                <  1:192060/149‑1 (MQ=255)                                                                                                                                     gCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATagag            >  2:138301/1‑149 (MQ=255)                                                                                                                                       accttggCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGa          <  2:286930/143‑1 (MQ=255)                                                                                                                                       aatttggCCGGACGCGACGCGGACGCGTCTTATCAGGCCTAAGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAATAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGa          <  1:231160/143‑1 (MQ=17)                                                                                                                                         aTTTGCCTGATGCGACGCTGACGCGACTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCACCGGAAAATCTCATCCGCATTAGCTGCAGATGCAAAAAAGCCTGATAGTTGAGCCGGCATTTCGAATTTAGTCGGTCATAGAGGAtt        >  2:57563/1‑149 (MQ=18)                                                                                                                                               cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGc  >  1:347892/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                AAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGC  >  NC_000913_3_vch_tpiA/3708182‑3708472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.