| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 1097294 | 14 (0.430) | 5 (0.160) | 5/266 | 3.6 | 32.0% | noncoding (1097294/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 1097455 | 8 (0.260) | noncoding (1097455/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC > NC_000913_3_vch_tpiA/1097315‑1097602 | ctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTcc < 1:149342/142‑1 (MQ=32)ctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTcc > 2:149342/1‑142 (MQ=32) cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg > 1:307920/1‑149 (MQ=32) cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTAATTTCGTTCGGGCTATTCTTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCGCTCACCCTTCGGGCAGCCCGCTTACTGCGTTTACGGGCTGTCCAACTTGCGTTCGc > 2:571902/1‑149 (MQ=11) ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAAGAGGGGATTGACTGGCTTCGCTCGCTCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGACTGTCGcc > 1:511653/1‑149 (MQ=11) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCgg > 2:478001/1‑149 (MQ=31) aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCg < 2:196492/149‑1 (MQ=31) tGCGTTCACGGTCTGTCCAACTGGCTGACGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATAAGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTCCTTTAAATATGGCGTTGAGGGGCGGGTTCGaa > 2:227155/1‑149 (MQ=11) gTTCACGGTCTGTCTAACCGGCCTGCGTCAGGTGTCGAACCCCGGTCGGGTCTTCTTATCTTTCCGGTTTGTGCATTATACGAAAAAAAAGCCCGTATTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:227155/149‑1 (MQ=11) tGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:489993/149‑1 (MQ=255) tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCACAACACCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGATTCGAACCCCCGATACGTTGc > 1:428575/1‑149 (MQ=255) | CTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC > NC_000913_3_vch_tpiA/1097315‑1097602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |