New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	59280 =	35 (1.080)	9 (0.320)	5/248	3.3	24.1%	noncoding (59280/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	59320 =	26 (0.920)					noncoding (59320/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

AATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA  >  NC_000913_3_vch_tpiA/59183‑59466                                                                                                                                          |                                                                                                                                                   aaTTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGTCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGga                                                                                                                                         <  1:102076/149‑1 (MQ=255)                 gTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCAGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGa                                                                                                                         >  2:350239/1‑149 (MQ=255)                                 ttGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCAtgatga                                                                                                         >  1:489120/1‑149 (MQ=255)                                   gCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGc                                                                                                       <  1:193798/149‑1 (MQ=255)                                      actaAAAAAGTACTGCTGAACAAATTACTGACAACGAAAATATTGAATGAGCCAGAATAAGATAAGGATGAAGGGGCTGGAACGCCGCTTCAACCTTAGCAGCAGCGAGGGATGATTTCACAATTAGAAAGATCTGCATGATGAGATat                                                                                                    >  2:67114/1‑148 (MQ=255)                                       ctaAAAAAGGACTGCCGAACAAATTACTTAGAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGTGCTTGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCAGGATGAGCTaga                                                                                                   <  1:248325/149‑1 (MQ=255)                                         aaaaaaGTACTGCTGAACAAATTACTGACAACGCAATTATAGAATGAGCAAAAATAAGCTAAGATTGAAGAGGCTGGAACGCCCATTCAACCTTAGCAGTAGCGAGAGATGATTTCACAATTGGAAAGACACGAACGATGAGCTAgaga                                                                                                 >  2:222786/1‑149 (MQ=255)                                          aaaaaGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGTATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGagaa                                                                                                <  1:292099/149‑1 (MQ=255)                                          aaaaaGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGATAAGGTAGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGagaa                                                                                                >  1:394442/1‑149 (MQ=255)                                           aaaaGTACTGCTGAACAAATTACTGACAACGTAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACTTTAGCAGTAGCGTGGGATTATTTCACAATTAGAAAGACCTGCATGATGAGCTAGagaag                                                                                               <  1:551443/149‑1 (MQ=255)                                                                      accGCAAGAATGGAATGAGCCAGAATAAGATAAATATGAAGGGGCTAGAACGCCCCTGCAAACATAGAAGTAGCGTGGGATGATTACACAATTAGAAAAACGTGCATGATCAGCTAGAGAAGAGGCTAGTGATGCAAAACGTCGTGCAg                                                                    >  2:522266/3‑149 (MQ=255)                                                                          taaggattGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAAGTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGaca                                                                <  2:489120/144‑1 (MQ=255)                                                                                    aTGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAATCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTagag                                                                                                  <  1:185670/105‑1 (MQ=255)                                                                                    aTGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAATCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTagag                                                                                                  >  2:185670/1‑105 (MQ=255)                                                                                         ccAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatg                                                                                                             <  2:113814/89‑1 (MQ=255)                                                                                         ccAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCatg                                                                                                             >  1:113814/1‑89 (MQ=255)                                                                                           agaagaAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGTTATGTGGTTATTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATggg                                               <  1:77578/149‑1 (MQ=255)                                                                                              aTAAGTTAAGGTTGAAGGGGTTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCAt                                            <  2:525614/149‑1 (MQ=255)                                                                                                  gCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtcg                                                                         <  2:197612/116‑1 (MQ=255)                                                                                                  gCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtcg                                                                         >  1:197612/1‑116 (MQ=255)                                                                                                       ggTTGAAGGGGCTGGAACGCCCCGTCAACCTTAGCAGTAGCGTGGTATGATTTCACAATTAGTAAGACCTGCATGATGAGCTAGAGATGAGCCTCGTGGCGCAAGGCGTCTTGCAGGACGCGGATCACCGAGATGGGCATCGCCAACCa                                   <  1:485581/149‑1 (MQ=255)                                                                                                         ttGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGa                                 >  2:196730/1‑149 (MQ=255)                                                                                                         ttGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGAAACAAAGGATGATATCACAATAAGAAAAACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGa                                 >  1:288222/1‑149 (MQ=255)                                                                                                                     tccagCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGc                     <  2:177840/145‑1 (MQ=255)                                                                                                                     tccagCCCCTGTAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGc                     <  2:175951/145‑1 (MQ=255)                                                                                                                      aaCGCCGCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGcc                    <  1:196730/149‑1 (MQ=255)                                                                                                                        cGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAg                      >  2:282229/1‑145 (MQ=255)                                                                                                                        cGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAg                      <  1:282229/145‑1 (MQ=255)                                                                                                                              ttCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGc                                                                                  >  2:2908/1‑79 (MQ=255)                                                                                                                              ttCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGc                                                                                  <  1:2908/79‑1 (MQ=255)                                                                                                                                 gaCCTCAGCATGAGCGGCGGATGGTTTCAGAAATAGAAAGACCTGCAGGACGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACa         <  2:547632/148‑1 (MQ=255)                                                                                                                                    cTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACTGAGATGGGCATCGCCAACGAGAATGCTAATTATCCCATGAATAACAATc      >  2:40671/1‑149 (MQ=255)                                                                                                                                    cTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATc      >  1:256710/1‑149 (MQ=255)                                                                                                                                      tAGCAGTAGCGTGGGATGATTTCACAAGTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGACATCGCCAACCAGACTGCTAAGTAGCCCATGAATAACAATCAg    >  2:277602/1‑149 (MQ=255)                                                                                                                                        ggagtagtGTGGGATGACCACACAATAAGGAAGACCTTCACGATGATCTAGAGAAGGGTCTAGTTACGCAAGTCGTCGGTCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACGATCAGaa  <  2:392690/147‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                   AATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGCTAATTAGCCCATGAATAACAATCAGAA  >  NC_000913_3_vch_tpiA/59183‑59466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.